Clone Sequence Records
BS13039.3prime Sequence
720 bp (672 high quality bases) assembled on 2006-10-13
> BS13039.3prime
ATGGTCTAGAAAGCTTTTAGTATGGCCTGCGAGACAGCCGCAACTTCTTT
TCCATTTCAAACTGCCTAAGATCGGTTCTCTCCAAAAAGTCTTGACGGTC
CAAATACCCGTCCTTGCCTTTGTTATGCGAGCACAGAAGTTCGTCTATGC
CTTCGTCTTGTTTAAATATTTTCCAATCCAATTGTGACCTTTCAAGCACT
GTCAATTTTTTCTTCTTTTCAAATTTATTTATCATGGTACCGATACTCTT
TTCAGCGGATGATCGTTTAATTTTTCCGAGTGTGGAAACTGAAAGCGTGG
TTCTTTTGGAATCGTATTGCTGTGCAGTTTTTATTATTGCCGTATCGTTT
TTATCATATTTATTACAAGTCTCATGCGTATTGGTATTGGTAGCACTTGC
TGCGTTTCCCTCCGTATAATCTGTTTTTTGGTTGATTACGCTTTTAGTAT
CAATGTCGCCAAGAAAATCGGCCCATAAAGCATCCGACCGCGATTTTTCA
GACTCCTCTTCGGAATGAAGGTCGTCGCACTCCTTAGACCTGTATTCCCT
ATTATCGCCGTCACAATGCCTTGTTTTCCGCAATGCCTTCGCAGTATGCT
TTGATTTTAGGCCTGGATAATTTTCAGACTTGTCCGACACATCACTTTCA
CTCTTATCACTGCCCTTGCCTGAAGTTAACAAATCGACATAATAATCATC
GTCGGTTTCGCAGTCCGATA
BS13039.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:34:03 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yeti-RB | 1576 | CG40218-RB | 57..760 | 720..17 | 3520 | 100 | Minus |
| Yeti-RA | 899 | CG40218-RA | 57..760 | 720..17 | 3520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:26:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 1344449..1345063 | 106..720 | 3075 | 100 | Plus |
| 2R | 25286936 | 2R | 1344291..1344382 | 17..108 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:26:22 has no hits.
BS13039.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:29:27 Download gff for
BS13039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 58..766 | 11..719 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:01 Download gff for
BS13039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 58..766 | 11..719 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:01 Download gff for
BS13039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 1344285..1344381 | 11..107 | 97 | <- | Plus |
| 2R | 1344451..1345062 | 108..719 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:29:27 Download gff for
BS13039.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 470918..471014 | 11..107 | 97 | <- | Plus |
| 2RHet | 471084..471695 | 108..719 | 100 | | Plus |
BS13039.5prime Sequence
744 bp (677 high quality bases) assembled on 2006-10-13
> BS13039.5prime
GAAGTTATCAGTCGACATGAACTCACAAAAAGAATACGTATCGGACTGCG
AAACCGACGATGATTATTATGTCGATTTGTTAACTTCAGGCAAGGGCAGT
GATAAGAGTGAAAGTGATGTGTCGGACAAGTCTGAAAATTATCCAGGCCT
AAAATCAAAGCATACTGCGAAGGCATTGCGGAAAACAAGGCATTGTGACG
GCGATAATAGGGAATACAGGTCTAAGGAGTGCGACGACCTTCATTCCGAA
GAGGAGTCTGAAAAATCGCGGTCGGATGCTTTATGGGCCGATTTTCTTGG
CGACATTGATACTAAAAGCGTAATCAACCAAAAAACAGATTATACGGAGG
GAAACGCAGCAAGTGCTACCAATACCAATACGCATGAGACTTGTAATAAA
TATGATAAAAACGATACGGCAATAATAAAAACTGCACAGCAATACGATTC
CAAAAGAACCACGCTTTCAGTTTCCACACTCGGAAAAATTAAACGATCAT
CCGCTGAAAAGAGTATCGGTACCATGATAAATAAATTTGAAAAGAAGAAA
AAATTGACAGTGCTTGAAAGGTCACAATTGGATTGGAAAATATTTAAACA
AGACGAAGGCATAGACGAACTTCTGTGCTCGCATAACAAAGGCAAGGACG
GGTATTTGGACCGTCAAGACTTTTTGGAGAGAACCGATCTTAGGCAGTTT
GAAATGGAAAAGAAGTTGCGGCTGTCTCGCAGGCCATACTAAAA
BS13039.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:34:04 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yeti-RB | 1576 | CG40218-RB | 35..760 | 17..742 | 3630 | 100 | Plus |
| Yeti-RA | 899 | CG40218-RA | 35..760 | 17..742 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 1344449..1345085 | 653..17 | 3185 | 100 | Minus |
| 2R | 25286936 | 2R | 1344291..1344382 | 742..651 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:03:46 has no hits.
BS13039.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:25 Download gff for
BS13039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 27..758 | 9..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:08 Download gff for
BS13039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 27..758 | 9..740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:08 Download gff for
BS13039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 1344293..1344381 | 652..740 | 100 | <- | Minus |
| 2R | 1344451..1345093 | 9..651 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:25 Download gff for
BS13039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 470926..471014 | 652..740 | 100 | <- | Minus |
| 2RHet | 471084..471726 | 9..651 | 99 | | Minus |
BS13039.complete Sequence
758 bp assembled on 2006-11-01
GenBank Submission: FJ637362
> BS13039.complete
GAAGTTATCAGTCGACATGAACTCACAAAAAGAATACGTATCGGACTGCG
AAACCGACGATGATTATTATGTCGATTTGTTAACTTCAGGCAAGGGCAGT
GATAAGAGTGAAAGTGATGTGTCGGACAAGTCTGAAAATTATCCAGGCCT
AAAATCAAAGCATACTGCGAAGGCATTGCGGAAAACAAGGCATTGTGACG
GCGATAATAGGGAATACAGGTCTAAGGAGTGCGACGACCTTCATTCCGAA
GAGGAGTCTGAAAAATCGCGGTCGGATGCTTTATGGGCCGATTTTCTTGG
CGACATTGATACTAAAAGCGTAATCAACCAAAAAACAGATTATACGGAGG
GAAACGCAGCAAGTGCTACCAATACCAATACGCATGAGACTTGTAATAAA
TATGATAAAAACGATACGGCAATAATAAAAACTGCACAGCAATACGATTC
CAAAAGAACCACGCTTTCAGTTTCCACACTCGGAAAAATTAAACGATCAT
CCGCTGAAAAGAGTATCGGTACCATGATAAATAAATTTGAAAAGAAGAAA
AAATTGACAGTGCTTGAAAGGTCACAATTGGATTGGAAAATATTTAAACA
AGACGAAGGCATAGACGAACTTCTGTGCTCGCATAACAAAGGCAAGGACG
GGTATTTGGACCGTCAAGACTTTTTGGAGAGAACCGATCTTAGGCAGTTT
GAAATGGAAAAGAAGTTGCGGCTGTCTCGCAGGCCATACTAAAAGCTTTC
TAGACCAT
BS13039.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:54:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yeti-RB | 726 | CG40218-PB | 1..726 | 17..742 | 3630 | 100 | Plus |
| Yeti-RA | 726 | CG40218-PA | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:54:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yeti-RB | 1576 | CG40218-RB | 35..760 | 17..742 | 3630 | 100 | Plus |
| Yeti-RA | 899 | CG40218-RA | 35..760 | 17..742 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 1344449..1345085 | 653..17 | 3185 | 100 | Minus |
| 2R | 25286936 | 2R | 1344291..1344382 | 742..651 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:54:21 has no hits.
BS13039.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:35 Download gff for
BS13039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 1..726 | 17..742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:34 Download gff for
BS13039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 22..761 | 9..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:05 Download gff for
BS13039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 35..758 | 17..740 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:36 Download gff for
BS13039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 22..761 | 9..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:38 Download gff for
BS13039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 35..758 | 17..740 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:38 Download gff for
BS13039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 1344293..1344381 | 652..740 | 100 | <- | Minus |
| 2R | 1344451..1345085 | 17..651 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:05 Download gff for
BS13039.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 470926..471014 | 652..740 | 100 | <- | Minus |
| 2RHet | 471084..471718 | 17..651 | 100 | | Minus |
BS13039.pep Sequence
Translation from 16 to 741
> BS13039.pep
MNSQKEYVSDCETDDDYYVDLLTSGKGSDKSESDVSDKSENYPGLKSKHT
AKALRKTRHCDGDNREYRSKECDDLHSEEESEKSRSDALWADFLGDIDTK
SVINQKTDYTEGNAASATNTNTHETCNKYDKNDTAIIKTAQQYDSKRTTL
SVSTLGKIKRSSAEKSIGTMINKFEKKKKLTVLERSQLDWKIFKQDEGID
ELLCSHNKGKDGYLDRQDFLERTDLRQFEMEKKLRLSRRPY*
BS13039.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yeti-PB | 241 | CG40218-PB | 1..241 | 1..241 | 1261 | 100 | Plus |
| Yeti-PA | 241 | CG40218-PA | 1..241 | 1..241 | 1261 | 100 | Plus |
