Clone Sequence Records
BS13040.5prime Sequence
690 bp (567 high quality bases) assembled on 2006-10-13
> BS13040.5prime
GAAGTTATCAGTCGACATGACAACCTCAAGTCTTGCAATCGGCGCATCCG
TAGCGCTTATTCTGTTGATGTTGACTGGTTCAGGGCATTGCCAAGTGGGA
TACGTGCGGCACCTGTCGGAGCTGCGGATAAGGGAACTTGAAAAATTGTC
GGTTCGTATACAGGGCTCCATCAACACCGAAAAGTATGCCTGCGAGAGCT
ATTTCGACTACGTCTGTAGCCGCAATCGACCCCTCTTTTCGATCATGGGA
CACATGCCGCAAATGGGCGATCTTATGCAGTTGCTGACCGAGCTGCAGAA
CGATCCAGAGCCATTCGAGGCTAAGCAGAAGACGCTGGACTTCTTCATCT
CCTGCAACGTGCACCACGCGCTGGAAGACTGCTATCGTGAGACCTATGAG
TATTTCAAGCCACTTTTCGGGTATATAGTTACAAAAAACATGCTCAATGG
AGAATCCCACGAGCTGGATGACTTTCTGGGCATTTTGGACCGCTTCGTCG
TCAGGTTTCAGAAGGACAGAGAGTCGAATCCCATTCTCAGCAAGCTGGCC
ACGTATAAGCAGAAATTTAAAACGCCGCGAGTCTACTTCCATGCTAGAGA
CCTGAGCCGGGAGTACAAGGACCTGCGGATCTACCGGGAGAGCTACGAAC
ACAACGTTCGCAATCTTGGAGCAGCACAAAAAACTGAATT
BS13040.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:19:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1092-PA | 1203 | CG1092-RA | 19..691 | 17..690 | 3305 | 99.7 | Plus |
CG1092-PB | 948 | CG1092-RB | 1..436 | 254..690 | 2120 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1092-RD | 1310 | CG1092-RD | 23..695 | 17..690 | 3330 | 99.7 | Plus |
CG1092-RC | 1492 | CG1092-RC | 205..877 | 17..690 | 3330 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4267260..4267701 | 248..690 | 2150 | 99.5 | Plus |
3R | 32079331 | 3R | 4266974..4267206 | 17..249 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:09:56 has no hits.
BS13040.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:30 Download gff for
BS13040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-PA | 13..691 | 8..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:19:01 Download gff for
BS13040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-RC | 199..877 | 8..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:47:13 Download gff for
BS13040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-RC | 199..877 | 8..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:47:13 Download gff for
BS13040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4266968..4267205 | 8..248 | 98 | -> | Plus |
3R | 4267261..4267701 | 249..690 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:19:01 Download gff for
BS13040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 92690..92927 | 8..248 | 98 | -> | Plus |
arm_3R | 92983..93423 | 249..690 | 99 | | Plus |
BS13040.complete Sequence
1217 bp assembled on 2008-08-14
GenBank Submission: KX803259
> BS13040.complete
GAAGTTATCAGTCGACATGACAACCTCAAGTCTTGCAATCGGCGCATCCG
TAGCGCTTATTCTGTTGATGTTGACTGGTTCAGGGCATTGCCAAGTGGGA
TACGTGCGGCACCTGTCGGAGCTGCGGATAAGGGAACTTGAAAAATTGTC
GGTTCGTATACAGGGCTCCATCAACACCGAAAAGTATGCCTGCGAGAGCT
ATTTCGACTACGTCTGTAGCCGCAATCGACCCCTCTTTTCGATCATGGGA
CACATGCCGCAAATGGGCGATCTTATGCAGTTGCTGACCGAGCTGCAGAA
CGATCCAGAGCCATTCGAGGCTAAGCAGAAGACGCTGGACTTCTTCATCT
CCTGCAACGTGCACCACGCGCTGGAAGACTGCTATCGTGAGACCTATGAG
TATTTCAAGCCACTTTTCGGGTATATAGTTACAAAAAACATGCTCAATGG
AGAATCCCACGAGCTGGATGACTTTCTGGGCATTTTGGACCGCTTCGTCG
TCAGGTTTCAGAAGGACAGAGAGTCGAATCCCATTCTCAGCAAGCTGGCC
ACGTATAAGCAGAAATTTAAAACGCCGCGAGTCTACTTCCATGCTAGAGA
CCTGAGCCGGGAGTACAAGGACCTGCGGATCTACCGGGAGAGCTACGAAC
ACAACGTTCGCAATCTGGAGCAGCACAGAAAACTGAATTCAACATACGAA
TTGGGGGTTCAGCGCACCATGCTGGATTGGAGCATGTACCTCTTTCAGAG
CCGCAACAAGCCCATGTCCTACTTCTACTCCACGTTTACGGTCCATTTGT
ACATGATGCTTTTTAATAGTCTGGAGCGTCAGCGTGATTTCACGCGGTTT
CGCGAAGATGTGGAGTGTTTAAGGCTGCCGCAGTTCGTTAATGTTCTGGA
TGAGGCCAGAATGCTGGCTGTGATCTACTTAAAGAGCTTCCGAGCGGCCT
GGATAGACTACAGCGCCTGGATCAACTCGCCTCCACAGAACAGTGGGATA
TACGATCAGGAAAATGGCGTCCTTCAAAAGTACCATCTTGACAACAAGCG
TATATTTTTTACTCTTTACGCTCAGAACTTCTGTGAGTTTGGGAAGGATC
TGGCCGAGCATGTCTTCTATCTGGGCCTTAAACAGAACAAGGACTTTTAC
GACATATACTCTTGTGGATTCCAAACGGAAAACCCTATGACTTGTGTTTA
AAAGCTTTCTAGACCAT
BS13040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1092-RD | 1185 | CG1092-PD | 1..1185 | 17..1201 | 5925 | 100 | Plus |
CG1092-RC | 1185 | CG1092-PC | 1..1185 | 17..1201 | 5925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1092-RD | 1310 | CG1092-RD | 23..1210 | 17..1204 | 5940 | 100 | Plus |
CG1092-RC | 1492 | CG1092-RC | 205..1392 | 17..1204 | 5940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4267260..4268216 | 248..1204 | 4785 | 100 | Plus |
3R | 32079331 | 3R | 4266974..4267206 | 17..249 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:34:38 has no hits.
BS13040.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:29 Download gff for
BS13040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-RA | 15..1219 | 8..1217 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:59 Download gff for
BS13040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-RC | 205..1387 | 17..1199 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:09 Download gff for
BS13040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-RA | 21..1203 | 17..1199 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:02 Download gff for
BS13040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1092-RC | 205..1387 | 17..1199 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:02 Download gff for
BS13040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4266974..4267205 | 17..248 | 100 | -> | Plus |
3R | 4267261..4268211 | 249..1199 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:59 Download gff for
BS13040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 92696..92927 | 17..248 | 100 | -> | Plus |
arm_3R | 92983..93933 | 249..1199 | 100 | | Plus |
BS13040.pep Sequence
Translation from 16 to 1200
> BS13040.pep
MTTSSLAIGASVALILLMLTGSGHCQVGYVRHLSELRIRELEKLSVRIQG
SINTEKYACESYFDYVCSRNRPLFSIMGHMPQMGDLMQLLTELQNDPEPF
EAKQKTLDFFISCNVHHALEDCYRETYEYFKPLFGYIVTKNMLNGESHEL
DDFLGILDRFVVRFQKDRESNPILSKLATYKQKFKTPRVYFHARDLSREY
KDLRIYRESYEHNVRNLEQHRKLNSTYELGVQRTMLDWSMYLFQSRNKPM
SYFYSTFTVHLYMMLFNSLERQRDFTRFREDVECLRLPQFVNVLDEARML
AVIYLKSFRAAWIDYSAWINSPPQNSGIYDQENGVLQKYHLDNKRIFFTL
YAQNFCEFGKDLAEHVFYLGLKQNKDFYDIYSCGFQTENPMTCV*
BS13040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1092-PD | 394 | CG1092-PD | 1..394 | 1..394 | 2097 | 100 | Plus |
CG1092-PC | 394 | CG1092-PC | 1..394 | 1..394 | 2097 | 100 | Plus |