Clone BS13040 Report

Search the DGRC for BS13040

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG1092-RC
Protein status:BS13040.pep: full length peptide match
Sequenced Size:1217

Clone Sequence Records

BS13040.5prime Sequence

690 bp (567 high quality bases) assembled on 2006-10-13

> BS13040.5prime
GAAGTTATCAGTCGACATGACAACCTCAAGTCTTGCAATCGGCGCATCCG
TAGCGCTTATTCTGTTGATGTTGACTGGTTCAGGGCATTGCCAAGTGGGA
TACGTGCGGCACCTGTCGGAGCTGCGGATAAGGGAACTTGAAAAATTGTC
GGTTCGTATACAGGGCTCCATCAACACCGAAAAGTATGCCTGCGAGAGCT
ATTTCGACTACGTCTGTAGCCGCAATCGACCCCTCTTTTCGATCATGGGA
CACATGCCGCAAATGGGCGATCTTATGCAGTTGCTGACCGAGCTGCAGAA
CGATCCAGAGCCATTCGAGGCTAAGCAGAAGACGCTGGACTTCTTCATCT
CCTGCAACGTGCACCACGCGCTGGAAGACTGCTATCGTGAGACCTATGAG
TATTTCAAGCCACTTTTCGGGTATATAGTTACAAAAAACATGCTCAATGG
AGAATCCCACGAGCTGGATGACTTTCTGGGCATTTTGGACCGCTTCGTCG
TCAGGTTTCAGAAGGACAGAGAGTCGAATCCCATTCTCAGCAAGCTGGCC
ACGTATAAGCAGAAATTTAAAACGCCGCGAGTCTACTTCCATGCTAGAGA
CCTGAGCCGGGAGTACAAGGACCTGCGGATCTACCGGGAGAGCTACGAAC
ACAACGTTCGCAATCTTGGAGCAGCACAAAAAACTGAATT

BS13040.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-PA 1203 CG1092-RA 19..691 17..690 3305 99.7 Plus
CG1092-PB 948 CG1092-RB 1..436 254..690 2120 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-RD 1310 CG1092-RD 23..695 17..690 3330 99.7 Plus
CG1092-RC 1492 CG1092-RC 205..877 17..690 3330 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4267260..4267701 248..690 2150 99.5 Plus
3R 32079331 3R 4266974..4267206 17..249 1165 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:09:56 has no hits.

BS13040.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:30 Download gff for BS13040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1092-PA 13..691 8..690 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:19:01 Download gff for BS13040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 199..877 8..690 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:47:13 Download gff for BS13040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 199..877 8..690 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:47:13 Download gff for BS13040.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4266968..4267205 8..248 98 -> Plus
3R 4267261..4267701 249..690 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:19:01 Download gff for BS13040.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 92690..92927 8..248 98 -> Plus
arm_3R 92983..93423 249..690 99   Plus

BS13040.complete Sequence

1217 bp assembled on 2008-08-14

GenBank Submission: KX803259

> BS13040.complete
GAAGTTATCAGTCGACATGACAACCTCAAGTCTTGCAATCGGCGCATCCG
TAGCGCTTATTCTGTTGATGTTGACTGGTTCAGGGCATTGCCAAGTGGGA
TACGTGCGGCACCTGTCGGAGCTGCGGATAAGGGAACTTGAAAAATTGTC
GGTTCGTATACAGGGCTCCATCAACACCGAAAAGTATGCCTGCGAGAGCT
ATTTCGACTACGTCTGTAGCCGCAATCGACCCCTCTTTTCGATCATGGGA
CACATGCCGCAAATGGGCGATCTTATGCAGTTGCTGACCGAGCTGCAGAA
CGATCCAGAGCCATTCGAGGCTAAGCAGAAGACGCTGGACTTCTTCATCT
CCTGCAACGTGCACCACGCGCTGGAAGACTGCTATCGTGAGACCTATGAG
TATTTCAAGCCACTTTTCGGGTATATAGTTACAAAAAACATGCTCAATGG
AGAATCCCACGAGCTGGATGACTTTCTGGGCATTTTGGACCGCTTCGTCG
TCAGGTTTCAGAAGGACAGAGAGTCGAATCCCATTCTCAGCAAGCTGGCC
ACGTATAAGCAGAAATTTAAAACGCCGCGAGTCTACTTCCATGCTAGAGA
CCTGAGCCGGGAGTACAAGGACCTGCGGATCTACCGGGAGAGCTACGAAC
ACAACGTTCGCAATCTGGAGCAGCACAGAAAACTGAATTCAACATACGAA
TTGGGGGTTCAGCGCACCATGCTGGATTGGAGCATGTACCTCTTTCAGAG
CCGCAACAAGCCCATGTCCTACTTCTACTCCACGTTTACGGTCCATTTGT
ACATGATGCTTTTTAATAGTCTGGAGCGTCAGCGTGATTTCACGCGGTTT
CGCGAAGATGTGGAGTGTTTAAGGCTGCCGCAGTTCGTTAATGTTCTGGA
TGAGGCCAGAATGCTGGCTGTGATCTACTTAAAGAGCTTCCGAGCGGCCT
GGATAGACTACAGCGCCTGGATCAACTCGCCTCCACAGAACAGTGGGATA
TACGATCAGGAAAATGGCGTCCTTCAAAAGTACCATCTTGACAACAAGCG
TATATTTTTTACTCTTTACGCTCAGAACTTCTGTGAGTTTGGGAAGGATC
TGGCCGAGCATGTCTTCTATCTGGGCCTTAAACAGAACAAGGACTTTTAC
GACATATACTCTTGTGGATTCCAAACGGAAAACCCTATGACTTGTGTTTA
AAAGCTTTCTAGACCAT

BS13040.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-RD 1185 CG1092-PD 1..1185 17..1201 5925 100 Plus
CG1092-RC 1185 CG1092-PC 1..1185 17..1201 5925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-RD 1310 CG1092-RD 23..1210 17..1204 5940 100 Plus
CG1092-RC 1492 CG1092-RC 205..1392 17..1204 5940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4267260..4268216 248..1204 4785 100 Plus
3R 32079331 3R 4266974..4267206 17..249 1165 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:34:38 has no hits.

BS13040.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:29 Download gff for BS13040.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 15..1219 8..1217 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:59 Download gff for BS13040.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 205..1387 17..1199 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:09 Download gff for BS13040.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 21..1203 17..1199 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:02 Download gff for BS13040.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 205..1387 17..1199 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:02 Download gff for BS13040.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4266974..4267205 17..248 100 -> Plus
3R 4267261..4268211 249..1199 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:59 Download gff for BS13040.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 92696..92927 17..248 100 -> Plus
arm_3R 92983..93933 249..1199 100   Plus

BS13040.pep Sequence

Translation from 16 to 1200

> BS13040.pep
MTTSSLAIGASVALILLMLTGSGHCQVGYVRHLSELRIRELEKLSVRIQG
SINTEKYACESYFDYVCSRNRPLFSIMGHMPQMGDLMQLLTELQNDPEPF
EAKQKTLDFFISCNVHHALEDCYRETYEYFKPLFGYIVTKNMLNGESHEL
DDFLGILDRFVVRFQKDRESNPILSKLATYKQKFKTPRVYFHARDLSREY
KDLRIYRESYEHNVRNLEQHRKLNSTYELGVQRTMLDWSMYLFQSRNKPM
SYFYSTFTVHLYMMLFNSLERQRDFTRFREDVECLRLPQFVNVLDEARML
AVIYLKSFRAAWIDYSAWINSPPQNSGIYDQENGVLQKYHLDNKRIFFTL
YAQNFCEFGKDLAEHVFYLGLKQNKDFYDIYSCGFQTENPMTCV*

BS13040.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-PD 394 CG1092-PD 1..394 1..394 2097 100 Plus
CG1092-PC 394 CG1092-PC 1..394 1..394 2097 100 Plus