Clone BS13042 Report

Search the DGRC for BS13042

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG45057-RA
Protein status:BS13042.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13042.3prime Sequence

609 bp (602 high quality bases) assembled on 2006-10-13

> BS13042.3prime
ATGGTCTAGAAAGCTTCTAGTGGGCATTGTCGTAGGTGTCCTTGTGCTGG
TAGCCACTCACATATCCGGATCCATCGACCACGTTCCGTCTGCCCGCGAT
ACCCTTGCCCTTTCCGGAGGCATCGAAACGCTCCTTGTGGGAACCGGTGT
ACTTGCTCGTATCCGTCAATCGATCCACGGCAGCTGCGGCTTTTCCAGCC
GAAACGGACACAACTCCTGGAGCTCCACAACTGGCCAACTTTTGCTTGAT
CTCCGACAGCTCCACCTTTTTCGTCTTGGCCAGATCGTCCAGGAATTTGT
TGTAGTCGCTGAGCGAGATCTTCATGGCCTTGAACTTCTTGAAGTGGATG
CCTGTATCCGTGGTGGTGATCTTCTTGTCGATAACTTTGGCCTGTTTCAT
CCACTTGTCACTCTGCGACAGCGTTATCAGCTTGCCATCGGACTTGGAGT
CCCCGAACTTGGAGAAGGCCTTGAACTGATCCGAAAAGCTAACCTTGGGC
TCATCCTCCAGCGCCAATTGGGCCAACTCGGTAGCGGGCACCTCAGGAGT
TGGCGCTGGGGAGGGGCTTCCATTTGCTGCAGCTACCTCGGACATGTCGA
CTGAATACT

BS13042.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4893-PA 579 CG4893-RA 1..579 595..17 2895 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG45057-RB 1169 CG45057-RB 151..731 596..16 2905 100 Minus
CG45057-RD 869 CG45057-RD 137..717 596..16 2905 100 Minus
CG45057-RC 840 CG45057-RC 108..688 596..16 2905 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16355633..16356030 199..596 1990 100 Plus
3L 28110227 3L 16355184..16355372 16..204 930 99.5 Plus
Blast to na_te.dros performed 2015-02-11 17:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 6959..7009 529..478 113 71.2 Minus

BS13042.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:30 Download gff for BS13042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4893-PA 1..579 17..595 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:05 Download gff for BS13042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4893-RC 103..688 16..600 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:43 Download gff for BS13042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG45057-RC 103..688 16..600 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:43 Download gff for BS13042.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16355184..16355367 16..199 100 <- Plus
3L 16355634..16356045 200..609 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:05 Download gff for BS13042.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16348284..16348467 16..199 100 <- Plus
arm_3L 16348734..16349145 200..609 98   Plus

BS13042.5prime Sequence

609 bp (609 high quality bases) assembled on 2006-10-13

> BS13042.5prime
GAAGTTATCAGTCGACATGTCCGAGGTAGCTGCAGCAAATGGAAGCCCCT
CCCCAGCGCCAACTCCTGAGGTGCCCGCTACCGAGTTGGCCCAATTGGCG
CTGGAGGATGAGCCCAAGGTTAGCTTTTCGGATCAGTTCAAGGCCTTCTC
CAAGTTCGGGGACTCCAAGTCCGATGGCAAGCTGATAACGCTGTCGCAGA
GTGACAAGTGGATGAAACAGGCCAAAGTTATCGACAAGAAGATCACCACC
ACGGATACAGGCATCCACTTCAAGAAGTTCAAGGCCATGAAGATCTCGCT
CAGCGACTACAACAAATTCCTGGACGATCTGGCCAAGACGAAAAAGGTGG
AGCTGTCGGAGATCAAGCAAAAGTTGGCCAGTTGTGGAGCTCCAGGAGTT
GTGTCCGTTTCGGCTGGAAAAGCCGCAGCTGCCGTGGATCGATTGACGGA
TACGAGCAAGTACACCGGTTCCCACAAGGAGCGTTTCGATGCCTCCGGAA
AGGGCAAGGGTATCGCGGGCAGACGGAACGTGGTCGATGGATCCGGATAT
GTGAGTGGCTACCAGCACAAGGACACCTACGACAATGCCCACTAGAAGCT
TTCTAGACC

BS13042.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4893-PA 579 CG4893-RA 1..579 17..595 2895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG45057-RB 1169 CG45057-RB 151..731 16..596 2905 100 Plus
CG45057-RD 869 CG45057-RD 137..717 16..596 2905 100 Plus
CG45057-RC 840 CG45057-RC 108..688 16..596 2905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16355633..16356030 413..16 1990 100 Minus
3L 28110227 3L 16355184..16355372 596..408 930 99.5 Minus
Blast to na_te.dros performed 2015-01-30 18:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 6959..7009 83..134 113 71.2 Plus

BS13042.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:31 Download gff for BS13042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4893-PA 1..579 17..595 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:11 Download gff for BS13042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4893-RC 103..688 12..596 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:29 Download gff for BS13042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG45057-RC 103..688 12..596 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:29 Download gff for BS13042.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16355184..16355367 413..596 100 <- Minus
3L 16355634..16356042 5..412 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:11 Download gff for BS13042.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16348284..16348467 413..596 100 <- Minus
arm_3L 16348734..16349142 5..412 99   Minus

BS13042.complete Sequence

611 bp assembled on 2006-11-01

GenBank Submission: FJ637363

> BS13042.complete
GAAGTTATCAGTCGACATGTCCGAGGTAGCTGCAGCAAATGGAAGCCCCT
CCCCAGCGCCAACTCCTGAGGTGCCCGCTACCGAGTTGGCCCAATTGGCG
CTGGAGGATGAGCCCAAGGTTAGCTTTTCGGATCAGTTCAAGGCCTTCTC
CAAGTTCGGGGACTCCAAGTCCGATGGCAAGCTGATAACGCTGTCGCAGA
GTGACAAGTGGATGAAACAGGCCAAAGTTATCGACAAGAAGATCACCACC
ACGGATACAGGCATCCACTTCAAGAAGTTCAAGGCCATGAAGATCTCGCT
CAGCGACTACAACAAATTCCTGGACGATCTGGCCAAGACGAAAAAGGTGG
AGCTGTCGGAGATCAAGCAAAAGTTGGCCAGTTGTGGAGCTCCAGGAGTT
GTGTCCGTTTCGGCTGGAAAAGCCGCAGCTGCCGTGGATCGATTGACGGA
TACGAGCAAGTACACCGGTTCCCACAAGGAGCGTTTCGATGCCTCCGGAA
AGGGCAAGGGTATCGCGGGCAGACGGAACGTGGTCGATGGATCCGGATAT
GTGAGTGGCTACCAGCACAAGGACACCTACGACAATGCCCACTAGAAGCT
TTCTAGACCAT

BS13042.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG45057-RB 579 CG45057-PB 1..579 17..595 2895 100 Plus
CG45057-RD 579 CG45057-PD 1..579 17..595 2895 100 Plus
CG45057-RC 579 CG45057-PC 1..579 17..595 2895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG45057-RB 1169 CG45057-RB 151..731 16..596 2905 100 Plus
CG45057-RD 869 CG45057-RD 137..717 16..596 2905 100 Plus
CG45057-RC 840 CG45057-RC 108..688 16..596 2905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16355633..16356030 413..16 1990 100 Minus
3L 28110227 3L 16355184..16355372 596..408 930 99.5 Minus
Blast to na_te.dros performed 2014-11-27 20:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 6959..7009 83..134 113 71.2 Plus

BS13042.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:37 Download gff for BS13042.complete
Subject Subject Range Query Range Percent Splice Strand
CG4893-RA 1..579 17..595 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:35 Download gff for BS13042.complete
Subject Subject Range Query Range Percent Splice Strand
CG4893-RA 126..714 7..596 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:19 Download gff for BS13042.complete
Subject Subject Range Query Range Percent Splice Strand
CG4893-RC 109..687 17..595 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:37 Download gff for BS13042.complete
Subject Subject Range Query Range Percent Splice Strand
CG4893-RA 126..714 7..596 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:32 Download gff for BS13042.complete
Subject Subject Range Query Range Percent Splice Strand
CG45057-RC 109..687 17..595 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:32 Download gff for BS13042.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16355185..16355367 413..595 100 <- Minus
3L 16355634..16356029 17..412 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:19 Download gff for BS13042.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16348285..16348467 413..595 100 <- Minus
arm_3L 16348734..16349129 17..412 100   Minus

BS13042.pep Sequence

Translation from 16 to 594

> BS13042.pep
MSEVAAANGSPSPAPTPEVPATELAQLALEDEPKVSFSDQFKAFSKFGDS
KSDGKLITLSQSDKWMKQAKVIDKKITTTDTGIHFKKFKAMKISLSDYNK
FLDDLAKTKKVELSEIKQKLASCGAPGVVSVSAGKAAAAVDRLTDTSKYT
GSHKERFDASGKGKGIAGRRNVVDGSGYVSGYQHKDTYDNAH*

BS13042.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG45057-PB 192 CG45057-PB 1..192 1..192 977 100 Plus
CG45057-PD 192 CG45057-PD 1..192 1..192 977 100 Plus
CG45057-PC 192 CG45057-PC 1..192 1..192 977 100 Plus
CG45057-PA 192 CG45057-PA 1..192 1..192 977 100 Plus
CG6709-PB 117 CG6709-PB 5..112 30..131 138 31.5 Plus