Clone BS13046 Report

Search the DGRC for BS13046

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptEb1-RA
Protein status:BS13046.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13046.3prime Sequence

661 bp (660 high quality bases) assembled on 2006-10-13

> BS13046.3prime
ATGGTCTAGAAAGCTTTTAATACTCCTCGTCCTCTGGTGGTGCATCGTCA
GGCGGCGCAAAACCATCCTCAGTCGCATATAAGATGTCCAAAATCTTTTG
TATGATCGGATGCGCCTCGGCGTCATCGGCTTCTTGGCAAAGAATTTCAA
TATCCCGCAACTTAGAGAAGTAAAAGTCTCGCTCCTTTTCCAATCCCTCC
AGGTTTATGCGCATATCCATCACCTGATTTGACATCTCTTCTATTTGTTG
ATTGTTGACCGAATTGCTCACGTCGTTCTTCTTGACCGTGCCCGTGCTGT
TGGCACAGGCGTTTATTCTGCTCGCTGGGGCTGCGTTGTTCGTGCGCGGC
AGCACCTTGGATACTGTGGGCTTCACTGCAGACGTCATTGCTGGGCGTGT
CGTTGCCGATGGGCCACGTCGATAGCTGCTGGACACGCCGCTTGCCGCCG
TGCCGGGCAGTGACTTTACCGCTCCCGATCCGAAGCCCATTGGGGCTCCC
TCGCGCACCGCGCTGGCATCGTAATCCCTGCCATCGTAATTGGCATCGAA
GAACTTTTTAAACCATTGCAAAAACTCGAAATTGTCTTGGAAGCGACCCT
TGACTAATTTGTCAATGGGTATAATCTTATCCCCAGACATCTTCTTGAAG
CCCGCCTGCAA

BS13046.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3265-PB 876 Eb1-RB 232..876 661..17 3200 99.8 Minus
CG3265-PD 876 Eb1-RD 232..876 661..17 3200 99.8 Minus
CG3265-PA 876 Eb1-RA 232..876 661..17 3200 99.8 Minus
CG3265-PC 1182 Eb1-RC 573..1182 626..17 3050 100 Minus
CG3265-PE 873 Eb1-RE 527..873 363..17 1735 100 Minus
CG3265-PE 873 Eb1-RE 232..526 661..367 1450 99.6 Minus
CG3265-PC 1182 Eb1-RC 232..269 661..624 165 97.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
Eb1-RG 2043 CG3265-RG 334..978 661..17 3210 99.8 Minus
Eb1-RA 1873 CG3265-RA 427..1071 661..17 3210 99.8 Minus
Eb1-RD 1779 CG3265-RD 333..977 661..17 3210 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 25202282..25202847 661..94 2400 95.2 Minus
2R 25286936 2R 6754178..6754438 627..367 1305 100 Minus
2R 25286936 2R 6754702..6754847 366..221 730 100 Minus
2R 25286936 2R 6754894..6754981 228..141 440 100 Minus
2R 25286936 2R 6755045..6755118 140..67 370 100 Minus
2R 25286936 2R 6755183..6755235 69..17 265 100 Minus
2R 25286936 2R 6753251..6753318 601..534 205 86.8 Minus
Blast to na_te.dros performed on 2015-02-12 04:04:04 has no hits.

BS13046.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:33 Download gff for BS13046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3265-PD 234..876 17..659 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:30 Download gff for BS13046.3prime
Subject Subject Range Query Range Percent Splice Strand
Eb1-RD 335..980 10..659 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:44 Download gff for BS13046.3prime
Subject Subject Range Query Range Percent Splice Strand
Eb1-RD 335..980 10..659 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:44 Download gff for BS13046.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 25202284..25202847 94..659 95 == Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:30 Download gff for BS13046.3prime
Subject Subject Range Query Range Percent Splice Strand
3LHet 687762..688325 94..659 95 == Minus

BS13046.5prime Sequence

626 bp (624 high quality bases) assembled on 2006-10-13

> BS13046.5prime
GAAGTTATCAGTCGACATGGCTGTAAACGTCTACTCCACAAATGTGACGT
CAGAGAATCTCTCGCGCCACGATATGCTAGCTTGGGTTAACGATTGCCTC
CAGTCGCAATTCTCAAAAATCGAGGAGCTCTGCACAGGTGCAGCTTACTG
TCAGTTCATGGACATGCTGTTTCCCAATTCAGTGCCAGTAAAGCGTGTCA
AATTTCGTACCAATCTGGAGCACGAGTACATACAGAACTTCAAGATATTG
CAGGCGGGCTTCAAGAAGATGTCTGTGGATAAGATTATACCCATTGACAA
ATTAGTCAAGGGTCGCTTCCAAGACAATTTCGAGTTTTTGCAATGGTTTA
AAAAGTTCTTCGATGCCAATTACGATGGCAGGGATTACGATGCCAGCGCG
GTGCGCGAGGGAGCCCCAATGGGCTTCGGATCGGGAGCGGTAAAGTCACT
GCCCGGCACGGCGGCAAGCGGCGTGTCCAGCAGCTATCGACGTGGCCCAT
CGGCAACGACACGCCCAGCAATGACGTCTGCAGTGAAGCCCACAGTATCC
AAGGTGCTGCCGCGCACGAACAACGCAGCCCCAGCGAGCAGAATAAACGC
CTGTGCCAACAGCACGGGCACGGTCA

BS13046.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3265-PB 876 Eb1-RB 1..610 17..626 3050 100 Plus
CG3265-PD 876 Eb1-RD 1..610 17..626 3050 100 Plus
CG3265-PA 876 Eb1-RA 1..610 17..626 3050 100 Plus
CG3265-PE 873 Eb1-RE 1..526 17..542 2630 100 Plus
CG3265-PC 1182 Eb1-RC 573..916 283..626 1720 100 Plus
CG3265-PC 1182 Eb1-RC 1..269 17..285 1345 100 Plus
CG3265-PE 873 Eb1-RE 527..607 546..626 405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
Eb1-RG 2043 CG3265-RG 101..712 15..626 3060 100 Plus
Eb1-RA 1873 CG3265-RA 194..805 15..626 3060 100 Plus
Eb1-RD 1779 CG3265-RD 100..711 15..626 3060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 25202057..25202660 15..626 2465 94.3 Plus
2R 25286936 2R 6754178..6754438 282..542 1305 100 Plus
2R 25286936 2R 6752841..6752988 136..283 740 100 Plus
2R 25286936 2R 6752662..6752786 15..139 625 100 Plus
2R 25286936 2R 6754702..6754785 543..626 420 100 Plus
3L 28110227 3L 7767898..7768147 369..120 245 73.2 Minus
2R 25286936 2R 6753251..6753318 308..375 205 86.8 Plus
Blast to na_te.dros performed on 2015-02-10 21:27:47 has no hits.

BS13046.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:34 Download gff for BS13046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3265-PD 1..609 17..625 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:29:43 Download gff for BS13046.5prime
Subject Subject Range Query Range Percent Splice Strand
Eb1-RD 95..710 9..625 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:54 Download gff for BS13046.5prime
Subject Subject Range Query Range Percent Splice Strand
Eb1-RD 95..710 9..625 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:54 Download gff for BS13046.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 25202052..25202659 9..625 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:29:43 Download gff for BS13046.5prime
Subject Subject Range Query Range Percent Splice Strand
3LHet 687530..688137 9..625 94   Plus

BS13046.complete Sequence

908 bp assembled on 2006-11-01

GenBank Submission: FJ637365

> BS13046.complete
GAAGTTATCAGTCGACATGGCTGTAAACGTCTACTCCACAAATGTGACGT
CAGAGAATCTCTCGCGCCACGATATGCTAGCTTGGGTTAACGATTGCCTC
CAGTCGCAATTCTCAAAAATCGAGGAGCTCTGCACAGGTGCAGCTTACTG
TCAGTTCATGGACATGCTGTTTCCCAATTCAGTGCCAGTAAAGCGTGTCA
AATTTCGTACCAATCTGGAGCACGAGTACATACAGAACTTCAAGATATTG
CAGGCGGGCTTCAAGAAGATGTCTGTGGATAAGATTATACCCATTGACAA
ATTAGTCAAGGGTCGCTTCCAAGACAATTTCGAGTTTTTGCAATGGTTTA
AAAAGTTCTTCGATGCCAATTACGATGGCAGGGATTACGATGCCAGCGCG
GTGCGCGAGGGAGCCCCAATGGGCTTCGGATCGGGAGCGGTAAAGTCACT
GCCCGGCACGGCGGCAAGCGGCGTGTCCAGCAGCTATCGACGTGGCCCAT
CGGCAACGACACGCCCAGCAATGACGTCTGCAGTGAAGCCCACAGTATCC
AAGGTGCTGCCGCGCACGAACAACGCAGCCCCAGCGAGCAGAATAAACGC
CTGTGCCAACAGCACGGGCACGGTCAAGAAGAACGACGTGAGCAATTCGG
TCAACAATCAACAAATAGAAGAGATGTCAAATCAGGTGATGGATATGCGC
ATAAACCTGGAGGGATTGGAAAAGGAGCGAGACTTTTACTTCTCTAAGTT
GCGGGATATTGAAATTCTTTGCCAAGAAGCCGATGACGCCGAGGCGCATC
CGATCATACAAAAGATTTTGGACATCTTATATGCGACTGAGGATGGTTTT
GCGCCGCCTGACGATGCACCACCAGAGGACGAGGAGTATTAAAAGCTTTC
TAGACCAT

BS13046.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
Eb1-RG 876 CG3265-PG 1..876 17..892 4380 100 Plus
Eb1-RA 876 CG3265-PA 1..876 17..892 4380 100 Plus
Eb1-RD 876 CG3265-PD 1..876 17..892 4380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
Eb1-RG 2043 CG3265-RG 101..978 15..892 4390 100 Plus
Eb1-RA 1873 CG3265-RA 194..1071 15..892 4390 100 Plus
Eb1-RD 1779 CG3265-RD 100..977 15..892 4390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 25202057..25202847 15..815 3210 94.3 Plus
2R 25286936 2R 6754178..6754438 282..542 1305 100 Plus
2R 25286936 2R 6752841..6752988 136..283 740 100 Plus
2R 25286936 2R 6754702..6754847 543..688 730 100 Plus
2R 25286936 2R 6752662..6752786 15..139 625 100 Plus
2R 25286936 2R 6754894..6754981 681..768 440 100 Plus
2R 25286936 2R 6755045..6755118 769..842 370 100 Plus
2R 25286936 2R 6755183..6755235 840..892 265 100 Plus
3L 28110227 3L 7767898..7768147 369..120 245 73.2 Minus
2R 25286936 2R 6753251..6753318 308..375 205 86.8 Plus
Blast to na_te.dros performed on 2014-11-27 15:29:46 has no hits.

BS13046.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:40 Download gff for BS13046.complete
Subject Subject Range Query Range Percent Splice Strand
Eb1-RD 1..876 17..892 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:40 Download gff for BS13046.complete
Subject Subject Range Query Range Percent Splice Strand
Eb1-RA 174..1059 9..899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:40 Download gff for BS13046.complete
Subject Subject Range Query Range Percent Splice Strand
Eb1-RD 102..975 17..890 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:41 Download gff for BS13046.complete
Subject Subject Range Query Range Percent Splice Strand
Eb1-RD 79..964 9..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:15 Download gff for BS13046.complete
Subject Subject Range Query Range Percent Splice Strand
Eb1-RD 102..975 17..890 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:15 Download gff for BS13046.complete
Subject Subject Range Query Range Percent Splice Strand
3L 25202059..25202852 17..822 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:40 Download gff for BS13046.complete
Subject Subject Range Query Range Percent Splice Strand
3LHet 687537..688330 17..822 93   Plus

BS13046.pep Sequence

Translation from 16 to 891

> BS13046.pep
MAVNVYSTNVTSENLSRHDMLAWVNDCLQSQFSKIEELCTGAAYCQFMDM
LFPNSVPVKRVKFRTNLEHEYIQNFKILQAGFKKMSVDKIIPIDKLVKGR
FQDNFEFLQWFKKFFDANYDGRDYDASAVREGAPMGFGSGAVKSLPGTAA
SGVSSSYRRGPSATTRPAMTSAVKPTVSKVLPRTNNAAPASRINACANST
GTVKKNDVSNSVNNQQIEEMSNQVMDMRINLEGLEKERDFYFSKLRDIEI
LCQEADDAEAHPIIQKILDILYATEDGFAPPDDAPPEDEEY*

BS13046.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
Eb1-PG 291 CG3265-PG 1..291 1..291 1514 100 Plus
Eb1-PA 291 CG3265-PA 1..291 1..291 1514 100 Plus
Eb1-PD 291 CG3265-PD 1..291 1..291 1514 100 Plus
Eb1-PB 291 CG3265-PB 1..291 1..291 1514 100 Plus
Eb1-PE 290 CG3265-PE 1..290 1..291 1496 99.3 Plus