Clone Sequence Records
BS13046.3prime Sequence
661 bp (660 high quality bases) assembled on 2006-10-13
> BS13046.3prime
ATGGTCTAGAAAGCTTTTAATACTCCTCGTCCTCTGGTGGTGCATCGTCA
GGCGGCGCAAAACCATCCTCAGTCGCATATAAGATGTCCAAAATCTTTTG
TATGATCGGATGCGCCTCGGCGTCATCGGCTTCTTGGCAAAGAATTTCAA
TATCCCGCAACTTAGAGAAGTAAAAGTCTCGCTCCTTTTCCAATCCCTCC
AGGTTTATGCGCATATCCATCACCTGATTTGACATCTCTTCTATTTGTTG
ATTGTTGACCGAATTGCTCACGTCGTTCTTCTTGACCGTGCCCGTGCTGT
TGGCACAGGCGTTTATTCTGCTCGCTGGGGCTGCGTTGTTCGTGCGCGGC
AGCACCTTGGATACTGTGGGCTTCACTGCAGACGTCATTGCTGGGCGTGT
CGTTGCCGATGGGCCACGTCGATAGCTGCTGGACACGCCGCTTGCCGCCG
TGCCGGGCAGTGACTTTACCGCTCCCGATCCGAAGCCCATTGGGGCTCCC
TCGCGCACCGCGCTGGCATCGTAATCCCTGCCATCGTAATTGGCATCGAA
GAACTTTTTAAACCATTGCAAAAACTCGAAATTGTCTTGGAAGCGACCCT
TGACTAATTTGTCAATGGGTATAATCTTATCCCCAGACATCTTCTTGAAG
CCCGCCTGCAA
BS13046.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3265-PB | 876 | Eb1-RB | 232..876 | 661..17 | 3200 | 99.8 | Minus |
CG3265-PD | 876 | Eb1-RD | 232..876 | 661..17 | 3200 | 99.8 | Minus |
CG3265-PA | 876 | Eb1-RA | 232..876 | 661..17 | 3200 | 99.8 | Minus |
CG3265-PC | 1182 | Eb1-RC | 573..1182 | 626..17 | 3050 | 100 | Minus |
CG3265-PE | 873 | Eb1-RE | 527..873 | 363..17 | 1735 | 100 | Minus |
CG3265-PE | 873 | Eb1-RE | 232..526 | 661..367 | 1450 | 99.6 | Minus |
CG3265-PC | 1182 | Eb1-RC | 232..269 | 661..624 | 165 | 97.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eb1-RG | 2043 | CG3265-RG | 334..978 | 661..17 | 3210 | 99.8 | Minus |
Eb1-RA | 1873 | CG3265-RA | 427..1071 | 661..17 | 3210 | 99.8 | Minus |
Eb1-RD | 1779 | CG3265-RD | 333..977 | 661..17 | 3210 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 25202282..25202847 | 661..94 | 2400 | 95.2 | Minus |
2R | 25286936 | 2R | 6754178..6754438 | 627..367 | 1305 | 100 | Minus |
2R | 25286936 | 2R | 6754702..6754847 | 366..221 | 730 | 100 | Minus |
2R | 25286936 | 2R | 6754894..6754981 | 228..141 | 440 | 100 | Minus |
2R | 25286936 | 2R | 6755045..6755118 | 140..67 | 370 | 100 | Minus |
2R | 25286936 | 2R | 6755183..6755235 | 69..17 | 265 | 100 | Minus |
2R | 25286936 | 2R | 6753251..6753318 | 601..534 | 205 | 86.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:04:04 has no hits.
BS13046.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:33 Download gff for
BS13046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3265-PD | 234..876 | 17..659 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:30 Download gff for
BS13046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eb1-RD | 335..980 | 10..659 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:44 Download gff for
BS13046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eb1-RD | 335..980 | 10..659 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:44 Download gff for
BS13046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 25202284..25202847 | 94..659 | 95 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:30 Download gff for
BS13046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 687762..688325 | 94..659 | 95 | == | Minus |
BS13046.5prime Sequence
626 bp (624 high quality bases) assembled on 2006-10-13
> BS13046.5prime
GAAGTTATCAGTCGACATGGCTGTAAACGTCTACTCCACAAATGTGACGT
CAGAGAATCTCTCGCGCCACGATATGCTAGCTTGGGTTAACGATTGCCTC
CAGTCGCAATTCTCAAAAATCGAGGAGCTCTGCACAGGTGCAGCTTACTG
TCAGTTCATGGACATGCTGTTTCCCAATTCAGTGCCAGTAAAGCGTGTCA
AATTTCGTACCAATCTGGAGCACGAGTACATACAGAACTTCAAGATATTG
CAGGCGGGCTTCAAGAAGATGTCTGTGGATAAGATTATACCCATTGACAA
ATTAGTCAAGGGTCGCTTCCAAGACAATTTCGAGTTTTTGCAATGGTTTA
AAAAGTTCTTCGATGCCAATTACGATGGCAGGGATTACGATGCCAGCGCG
GTGCGCGAGGGAGCCCCAATGGGCTTCGGATCGGGAGCGGTAAAGTCACT
GCCCGGCACGGCGGCAAGCGGCGTGTCCAGCAGCTATCGACGTGGCCCAT
CGGCAACGACACGCCCAGCAATGACGTCTGCAGTGAAGCCCACAGTATCC
AAGGTGCTGCCGCGCACGAACAACGCAGCCCCAGCGAGCAGAATAAACGC
CTGTGCCAACAGCACGGGCACGGTCA
BS13046.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3265-PB | 876 | Eb1-RB | 1..610 | 17..626 | 3050 | 100 | Plus |
CG3265-PD | 876 | Eb1-RD | 1..610 | 17..626 | 3050 | 100 | Plus |
CG3265-PA | 876 | Eb1-RA | 1..610 | 17..626 | 3050 | 100 | Plus |
CG3265-PE | 873 | Eb1-RE | 1..526 | 17..542 | 2630 | 100 | Plus |
CG3265-PC | 1182 | Eb1-RC | 573..916 | 283..626 | 1720 | 100 | Plus |
CG3265-PC | 1182 | Eb1-RC | 1..269 | 17..285 | 1345 | 100 | Plus |
CG3265-PE | 873 | Eb1-RE | 527..607 | 546..626 | 405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eb1-RG | 2043 | CG3265-RG | 101..712 | 15..626 | 3060 | 100 | Plus |
Eb1-RA | 1873 | CG3265-RA | 194..805 | 15..626 | 3060 | 100 | Plus |
Eb1-RD | 1779 | CG3265-RD | 100..711 | 15..626 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 25202057..25202660 | 15..626 | 2465 | 94.3 | Plus |
2R | 25286936 | 2R | 6754178..6754438 | 282..542 | 1305 | 100 | Plus |
2R | 25286936 | 2R | 6752841..6752988 | 136..283 | 740 | 100 | Plus |
2R | 25286936 | 2R | 6752662..6752786 | 15..139 | 625 | 100 | Plus |
2R | 25286936 | 2R | 6754702..6754785 | 543..626 | 420 | 100 | Plus |
3L | 28110227 | 3L | 7767898..7768147 | 369..120 | 245 | 73.2 | Minus |
2R | 25286936 | 2R | 6753251..6753318 | 308..375 | 205 | 86.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:27:47 has no hits.
BS13046.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:34 Download gff for
BS13046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3265-PD | 1..609 | 17..625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:29:43 Download gff for
BS13046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eb1-RD | 95..710 | 9..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:54 Download gff for
BS13046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eb1-RD | 95..710 | 9..625 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:54 Download gff for
BS13046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 25202052..25202659 | 9..625 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:29:43 Download gff for
BS13046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 687530..688137 | 9..625 | 94 | | Plus |
BS13046.complete Sequence
908 bp assembled on 2006-11-01
GenBank Submission: FJ637365
> BS13046.complete
GAAGTTATCAGTCGACATGGCTGTAAACGTCTACTCCACAAATGTGACGT
CAGAGAATCTCTCGCGCCACGATATGCTAGCTTGGGTTAACGATTGCCTC
CAGTCGCAATTCTCAAAAATCGAGGAGCTCTGCACAGGTGCAGCTTACTG
TCAGTTCATGGACATGCTGTTTCCCAATTCAGTGCCAGTAAAGCGTGTCA
AATTTCGTACCAATCTGGAGCACGAGTACATACAGAACTTCAAGATATTG
CAGGCGGGCTTCAAGAAGATGTCTGTGGATAAGATTATACCCATTGACAA
ATTAGTCAAGGGTCGCTTCCAAGACAATTTCGAGTTTTTGCAATGGTTTA
AAAAGTTCTTCGATGCCAATTACGATGGCAGGGATTACGATGCCAGCGCG
GTGCGCGAGGGAGCCCCAATGGGCTTCGGATCGGGAGCGGTAAAGTCACT
GCCCGGCACGGCGGCAAGCGGCGTGTCCAGCAGCTATCGACGTGGCCCAT
CGGCAACGACACGCCCAGCAATGACGTCTGCAGTGAAGCCCACAGTATCC
AAGGTGCTGCCGCGCACGAACAACGCAGCCCCAGCGAGCAGAATAAACGC
CTGTGCCAACAGCACGGGCACGGTCAAGAAGAACGACGTGAGCAATTCGG
TCAACAATCAACAAATAGAAGAGATGTCAAATCAGGTGATGGATATGCGC
ATAAACCTGGAGGGATTGGAAAAGGAGCGAGACTTTTACTTCTCTAAGTT
GCGGGATATTGAAATTCTTTGCCAAGAAGCCGATGACGCCGAGGCGCATC
CGATCATACAAAAGATTTTGGACATCTTATATGCGACTGAGGATGGTTTT
GCGCCGCCTGACGATGCACCACCAGAGGACGAGGAGTATTAAAAGCTTTC
TAGACCAT
BS13046.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eb1-RG | 876 | CG3265-PG | 1..876 | 17..892 | 4380 | 100 | Plus |
Eb1-RA | 876 | CG3265-PA | 1..876 | 17..892 | 4380 | 100 | Plus |
Eb1-RD | 876 | CG3265-PD | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eb1-RG | 2043 | CG3265-RG | 101..978 | 15..892 | 4390 | 100 | Plus |
Eb1-RA | 1873 | CG3265-RA | 194..1071 | 15..892 | 4390 | 100 | Plus |
Eb1-RD | 1779 | CG3265-RD | 100..977 | 15..892 | 4390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:29:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 25202057..25202847 | 15..815 | 3210 | 94.3 | Plus |
2R | 25286936 | 2R | 6754178..6754438 | 282..542 | 1305 | 100 | Plus |
2R | 25286936 | 2R | 6752841..6752988 | 136..283 | 740 | 100 | Plus |
2R | 25286936 | 2R | 6754702..6754847 | 543..688 | 730 | 100 | Plus |
2R | 25286936 | 2R | 6752662..6752786 | 15..139 | 625 | 100 | Plus |
2R | 25286936 | 2R | 6754894..6754981 | 681..768 | 440 | 100 | Plus |
2R | 25286936 | 2R | 6755045..6755118 | 769..842 | 370 | 100 | Plus |
2R | 25286936 | 2R | 6755183..6755235 | 840..892 | 265 | 100 | Plus |
3L | 28110227 | 3L | 7767898..7768147 | 369..120 | 245 | 73.2 | Minus |
2R | 25286936 | 2R | 6753251..6753318 | 308..375 | 205 | 86.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:29:46 has no hits.
BS13046.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:40 Download gff for
BS13046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eb1-RD | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:40 Download gff for
BS13046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eb1-RA | 174..1059 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:40 Download gff for
BS13046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eb1-RD | 102..975 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:41 Download gff for
BS13046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eb1-RD | 79..964 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:15 Download gff for
BS13046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eb1-RD | 102..975 | 17..890 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:15 Download gff for
BS13046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 25202059..25202852 | 17..822 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:40 Download gff for
BS13046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 687537..688330 | 17..822 | 93 | | Plus |
BS13046.pep Sequence
Translation from 16 to 891
> BS13046.pep
MAVNVYSTNVTSENLSRHDMLAWVNDCLQSQFSKIEELCTGAAYCQFMDM
LFPNSVPVKRVKFRTNLEHEYIQNFKILQAGFKKMSVDKIIPIDKLVKGR
FQDNFEFLQWFKKFFDANYDGRDYDASAVREGAPMGFGSGAVKSLPGTAA
SGVSSSYRRGPSATTRPAMTSAVKPTVSKVLPRTNNAAPASRINACANST
GTVKKNDVSNSVNNQQIEEMSNQVMDMRINLEGLEKERDFYFSKLRDIEI
LCQEADDAEAHPIIQKILDILYATEDGFAPPDDAPPEDEEY*
BS13046.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eb1-PG | 291 | CG3265-PG | 1..291 | 1..291 | 1514 | 100 | Plus |
Eb1-PA | 291 | CG3265-PA | 1..291 | 1..291 | 1514 | 100 | Plus |
Eb1-PD | 291 | CG3265-PD | 1..291 | 1..291 | 1514 | 100 | Plus |
Eb1-PB | 291 | CG3265-PB | 1..291 | 1..291 | 1514 | 100 | Plus |
Eb1-PE | 290 | CG3265-PE | 1..290 | 1..291 | 1496 | 99.3 | Plus |