Clone BS13048 Report

Search the DGRC for BS13048

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG2846-RA
Protein status:BS13048.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13048.3prime Sequence

492 bp (492 high quality bases) assembled on 2006-10-13

> BS13048.3prime
ATGGTCTAGAAAGCTTCTATTTCGACGAGCAGAGCTTCTCCGTAAAGAAC
GGAGCCTCCTTCAGCTTGGCCTTGTCCGCCTCGTCGAGGAACGCCTTGGC
CTGCTCGATGTCCCCGCGGATGGCGGCAATCAGTGACTCCAGGGAGTCGA
AACTGCGCTCCGGTCGCAGGTAGCCTACAATGCATATCTTGAGTGTCTGG
CCGTAAAGGTCACAGTTAAAGTCGTGTAGCATGTGCGTCTCCACGCTCTT
CTCCTTGTTGTTGTAGAAGGGATTCCAGCCGATGCTGAGGACCATCTTGT
GCACGGGTCCATTATCCACGTTTGCCCAACCGTAGTACGCGCCAGTGGGC
AGGGATTCCGGCAGCGATTTCACCACCTCCAGCGGAAAGTTAGCTGTTGG
GATGCCCAGCTCTTTGGAGCCGCGTCCGAAGCCCCGAACAATCTCGCCCC
CAGCGAACAGAGGCAGTTGGCTCAGCATGTCGACTGATAACT

BS13048.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2846-PA 462 CG2846-RA 1..462 478..17 2310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2846-RB 997 CG2846-RB 278..739 478..17 2310 100 Minus
CG2846-RA 1210 CG2846-RA 278..739 478..17 2310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7912488..7912866 17..395 1895 100 Plus
3R 32079331 3R 7912929..7913013 394..478 425 100 Plus
Blast to na_te.dros performed 2015-02-12 04:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3904..3942 83..45 105 74.4 Minus

BS13048.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:35 Download gff for BS13048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2846-PA 1..462 17..478 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:32 Download gff for BS13048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 269..739 17..488 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:58 Download gff for BS13048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 269..739 17..488 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:58 Download gff for BS13048.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7912488..7912864 17..393 100 <- Plus
3R 7912929..7913022 394..488 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:32 Download gff for BS13048.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3738210..3738586 17..393 100 <- Plus
arm_3R 3738651..3738744 394..488 95   Plus

BS13048.5prime Sequence

492 bp (492 high quality bases) assembled on 2006-10-13

> BS13048.5prime
GAAGTTATCAGTCGACATGCTGAGCCAACTGCCTCTGTTCGCTGGGGGCG
AGATTGTTCGGGGCTTCGGACGCGGCTCCAAAGAGCTGGGCATCCCAACA
GCTAACTTTCCGCTGGAGGTGGTGAAATCGCTGCCGGAATCCCTGCCCAC
TGGCGCGTACTACGGTTGGGCAAACGTGGATAATGGACCCGTGCACAAGA
TGGTCCTCAGCATCGGCTGGAATCCCTTCTACAACAACAAGGAGAAGAGC
GTGGAGACGCACATGCTACACGACTTTAACTGTGACCTTTACGGCCAGAC
ACTCAAGATATGCATTGTAGGCTACCTGCGACCGGAGCGCAGTTTCGACT
CCCTGGAGTCACTGATTGCCGCCATCCGCGGGGACATCGAGCAGGCCAAG
GCGTTCCTCGACGAGGCGGACAAGGCCAAGCTGAAGGAGGCTCCGTTCTT
TACGGAGAAGCTCTGCTCGTCGAAATAGAAGCTTTCTAGACC

BS13048.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2846-PA 462 CG2846-RA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG2846-RB 997 CG2846-RB 278..739 17..478 2310 100 Plus
CG2846-RA 1210 CG2846-RA 278..739 17..478 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7912488..7912866 478..100 1895 100 Minus
3R 32079331 3R 7912929..7913013 101..17 425 100 Minus
Blast to na_te.dros performed 2015-02-10 21:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3904..3942 412..450 105 74.4 Plus

BS13048.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:35 Download gff for BS13048.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2846-PA 1..462 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:39 Download gff for BS13048.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 269..739 7..478 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:26 Download gff for BS13048.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 269..739 7..478 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:26 Download gff for BS13048.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7912488..7912864 102..478 100 <- Minus
3R 7912929..7913022 7..101 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:39 Download gff for BS13048.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3738210..3738586 102..478 100 <- Minus
arm_3R 3738651..3738744 7..101 95   Minus

BS13048.complete Sequence

494 bp assembled on 2006-11-01

GenBank Submission: FJ637366

> BS13048.complete
GAAGTTATCAGTCGACATGCTGAGCCAACTGCCTCTGTTCGCTGGGGGCG
AGATTGTTCGGGGCTTCGGACGCGGCTCCAAAGAGCTGGGCATCCCAACA
GCTAACTTTCCGCTGGAGGTGGTGAAATCGCTGCCGGAATCCCTGCCCAC
TGGCGCGTACTACGGTTGGGCAAACGTGGATAATGGACCCGTGCACAAGA
TGGTCCTCAGCATCGGCTGGAATCCCTTCTACAACAACAAGGAGAAGAGC
GTGGAGACGCACATGCTACACGACTTTAACTGTGACCTTTACGGCCAGAC
ACTCAAGATATGCATTGTAGGCTACCTGCGACCGGAGCGCAGTTTCGACT
CCCTGGAGTCACTGATTGCCGCCATCCGCGGGGACATCGAGCAGGCCAAG
GCGTTCCTCGACGAGGCGGACAAGGCCAAGCTGAAGGAGGCTCCGTTCTT
TACGGAGAAGCTCTGCTCGTCGAAATAGAAGCTTTCTAGACCAT

BS13048.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG2846-RB 462 CG2846-PB 1..462 17..478 2310 100 Plus
CG2846-RA 462 CG2846-PA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG2846-RB 997 CG2846-RB 278..739 17..478 2310 100 Plus
CG2846-RA 1210 CG2846-RA 278..739 17..478 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7912488..7912866 478..100 1895 100 Minus
3R 32079331 3R 7912929..7913013 101..17 425 100 Minus
Blast to na_te.dros performed 2014-11-27 23:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3904..3942 412..450 105 74.4 Plus

BS13048.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:30:59 Download gff for BS13048.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 1..462 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:14:54 Download gff for BS13048.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 256..726 7..478 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:56 Download gff for BS13048.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 278..733 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:00 Download gff for BS13048.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 256..726 7..478 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:35 Download gff for BS13048.complete
Subject Subject Range Query Range Percent Splice Strand
CG2846-RA 278..733 17..472 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:35 Download gff for BS13048.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7912494..7912864 102..472 100 <- Minus
3R 7912929..7913013 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:56 Download gff for BS13048.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3738216..3738586 102..472 100 <- Minus
arm_3R 3738651..3738735 17..101 100   Minus

BS13048.pep Sequence

Translation from 16 to 477

> BS13048.pep
MLSQLPLFAGGEIVRGFGRGSKELGIPTANFPLEVVKSLPESLPTGAYYG
WANVDNGPVHKMVLSIGWNPFYNNKEKSVETHMLHDFNCDLYGQTLKICI
VGYLRPERSFDSLESLIAAIRGDIEQAKAFLDEADKAKLKEAPFFTEKLC
SSK*

BS13048.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG2846-PB 153 CG2846-PB 1..153 1..153 807 100 Plus
CG2846-PA 153 CG2846-PA 1..153 1..153 807 100 Plus