Clone Sequence Records
BS13048.3prime Sequence
492 bp (492 high quality bases) assembled on 2006-10-13
> BS13048.3prime
ATGGTCTAGAAAGCTTCTATTTCGACGAGCAGAGCTTCTCCGTAAAGAAC
GGAGCCTCCTTCAGCTTGGCCTTGTCCGCCTCGTCGAGGAACGCCTTGGC
CTGCTCGATGTCCCCGCGGATGGCGGCAATCAGTGACTCCAGGGAGTCGA
AACTGCGCTCCGGTCGCAGGTAGCCTACAATGCATATCTTGAGTGTCTGG
CCGTAAAGGTCACAGTTAAAGTCGTGTAGCATGTGCGTCTCCACGCTCTT
CTCCTTGTTGTTGTAGAAGGGATTCCAGCCGATGCTGAGGACCATCTTGT
GCACGGGTCCATTATCCACGTTTGCCCAACCGTAGTACGCGCCAGTGGGC
AGGGATTCCGGCAGCGATTTCACCACCTCCAGCGGAAAGTTAGCTGTTGG
GATGCCCAGCTCTTTGGAGCCGCGTCCGAAGCCCCGAACAATCTCGCCCC
CAGCGAACAGAGGCAGTTGGCTCAGCATGTCGACTGATAACT
BS13048.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2846-PA | 462 | CG2846-RA | 1..462 | 478..17 | 2310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2846-RB | 997 | CG2846-RB | 278..739 | 478..17 | 2310 | 100 | Minus |
CG2846-RA | 1210 | CG2846-RA | 278..739 | 478..17 | 2310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7912488..7912866 | 17..395 | 1895 | 100 | Plus |
3R | 32079331 | 3R | 7912929..7913013 | 394..478 | 425 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 04:04:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3904..3942 | 83..45 | 105 | 74.4 | Minus |
BS13048.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:35 Download gff for
BS13048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-PA | 1..462 | 17..478 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:32 Download gff for
BS13048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-RA | 269..739 | 17..488 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:58 Download gff for
BS13048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-RA | 269..739 | 17..488 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:58 Download gff for
BS13048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7912488..7912864 | 17..393 | 100 | <- | Plus |
3R | 7912929..7913022 | 394..488 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:32 Download gff for
BS13048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3738210..3738586 | 17..393 | 100 | <- | Plus |
arm_3R | 3738651..3738744 | 394..488 | 95 | | Plus |
BS13048.5prime Sequence
492 bp (492 high quality bases) assembled on 2006-10-13
> BS13048.5prime
GAAGTTATCAGTCGACATGCTGAGCCAACTGCCTCTGTTCGCTGGGGGCG
AGATTGTTCGGGGCTTCGGACGCGGCTCCAAAGAGCTGGGCATCCCAACA
GCTAACTTTCCGCTGGAGGTGGTGAAATCGCTGCCGGAATCCCTGCCCAC
TGGCGCGTACTACGGTTGGGCAAACGTGGATAATGGACCCGTGCACAAGA
TGGTCCTCAGCATCGGCTGGAATCCCTTCTACAACAACAAGGAGAAGAGC
GTGGAGACGCACATGCTACACGACTTTAACTGTGACCTTTACGGCCAGAC
ACTCAAGATATGCATTGTAGGCTACCTGCGACCGGAGCGCAGTTTCGACT
CCCTGGAGTCACTGATTGCCGCCATCCGCGGGGACATCGAGCAGGCCAAG
GCGTTCCTCGACGAGGCGGACAAGGCCAAGCTGAAGGAGGCTCCGTTCTT
TACGGAGAAGCTCTGCTCGTCGAAATAGAAGCTTTCTAGACC
BS13048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2846-PA | 462 | CG2846-RA | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:53:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2846-RB | 997 | CG2846-RB | 278..739 | 17..478 | 2310 | 100 | Plus |
CG2846-RA | 1210 | CG2846-RA | 278..739 | 17..478 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7912488..7912866 | 478..100 | 1895 | 100 | Minus |
3R | 32079331 | 3R | 7912929..7913013 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 21:53:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3904..3942 | 412..450 | 105 | 74.4 | Plus |
BS13048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:35 Download gff for
BS13048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-PA | 1..462 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:39 Download gff for
BS13048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-RA | 269..739 | 7..478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:26 Download gff for
BS13048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-RA | 269..739 | 7..478 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:26 Download gff for
BS13048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7912488..7912864 | 102..478 | 100 | <- | Minus |
3R | 7912929..7913022 | 7..101 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:39 Download gff for
BS13048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3738210..3738586 | 102..478 | 100 | <- | Minus |
arm_3R | 3738651..3738744 | 7..101 | 95 | | Minus |
BS13048.complete Sequence
494 bp assembled on 2006-11-01
GenBank Submission: FJ637366
> BS13048.complete
GAAGTTATCAGTCGACATGCTGAGCCAACTGCCTCTGTTCGCTGGGGGCG
AGATTGTTCGGGGCTTCGGACGCGGCTCCAAAGAGCTGGGCATCCCAACA
GCTAACTTTCCGCTGGAGGTGGTGAAATCGCTGCCGGAATCCCTGCCCAC
TGGCGCGTACTACGGTTGGGCAAACGTGGATAATGGACCCGTGCACAAGA
TGGTCCTCAGCATCGGCTGGAATCCCTTCTACAACAACAAGGAGAAGAGC
GTGGAGACGCACATGCTACACGACTTTAACTGTGACCTTTACGGCCAGAC
ACTCAAGATATGCATTGTAGGCTACCTGCGACCGGAGCGCAGTTTCGACT
CCCTGGAGTCACTGATTGCCGCCATCCGCGGGGACATCGAGCAGGCCAAG
GCGTTCCTCGACGAGGCGGACAAGGCCAAGCTGAAGGAGGCTCCGTTCTT
TACGGAGAAGCTCTGCTCGTCGAAATAGAAGCTTTCTAGACCAT
BS13048.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2846-RB | 462 | CG2846-PB | 1..462 | 17..478 | 2310 | 100 | Plus |
CG2846-RA | 462 | CG2846-PA | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:42:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2846-RB | 997 | CG2846-RB | 278..739 | 17..478 | 2310 | 100 | Plus |
CG2846-RA | 1210 | CG2846-RA | 278..739 | 17..478 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:42:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7912488..7912866 | 478..100 | 1895 | 100 | Minus |
3R | 32079331 | 3R | 7912929..7913013 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 23:42:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3904..3942 | 412..450 | 105 | 74.4 | Plus |
BS13048.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:30:59 Download gff for
BS13048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-RA | 1..462 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:14:54 Download gff for
BS13048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-RA | 256..726 | 7..478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:56 Download gff for
BS13048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-RA | 278..733 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:00 Download gff for
BS13048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-RA | 256..726 | 7..478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:35 Download gff for
BS13048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2846-RA | 278..733 | 17..472 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:35 Download gff for
BS13048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7912494..7912864 | 102..472 | 100 | <- | Minus |
3R | 7912929..7913013 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:56 Download gff for
BS13048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3738216..3738586 | 102..472 | 100 | <- | Minus |
arm_3R | 3738651..3738735 | 17..101 | 100 | | Minus |
BS13048.pep Sequence
Translation from 16 to 477
> BS13048.pep
MLSQLPLFAGGEIVRGFGRGSKELGIPTANFPLEVVKSLPESLPTGAYYG
WANVDNGPVHKMVLSIGWNPFYNNKEKSVETHMLHDFNCDLYGQTLKICI
VGYLRPERSFDSLESLIAAIRGDIEQAKAFLDEADKAKLKEAPFFTEKLC
SSK*
BS13048.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2846-PB | 153 | CG2846-PB | 1..153 | 1..153 | 807 | 100 | Plus |
CG2846-PA | 153 | CG2846-PA | 1..153 | 1..153 | 807 | 100 | Plus |