Clone BS13049 Report

Search the DGRC for BS13049

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG14968-RA
Protein status:BS13049.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13049.3prime Sequence

630 bp (630 high quality bases) assembled on 2006-10-13

> BS13049.3prime
ATGGTCTAGAAAGCTTCTACGCCTCCGTTTCTTGCTCCAGTTCGCCAGCC
TGGATTTCCTCCGGCGTTCGCAGATCGATGGCGAACTTGTGTCGCGTGGG
TGTAATAGTGTCGCTGGGCGTGGCCTCGCCCTCCTCCTCACCGGTTGCCT
CCTTGACCCGTCGCGAGTAATCCTGGAAGGCGGCGGCCAGGGCAAAGGTC
AACTTCCGCGCCATCGCACGACTGTCGCACACGAAGGCGTGAACCTCAAA
GGGATGCGGACTCGACTCGTCCTTCACCACGATCATGGCAAAGACCCTTG
TGTAGACCAGGTCCTGAACGCCATACGAGATCGTGTCGATGGGATAGCTC
CAGTGATTGATGCTGGCCTTTGGCGATATGATCTCCAGCTGGACTCCGTC
GGTGGACACCTTCAGTTCGCAGTTGGGCAGCACCTTATTGGGCGGCAGGT
TCTTGGCCACGCCCACCATTATGTCCACCGGACGACGCGTATACTTAATG
CCCCATAAGCCACGTGCCACTTCGGAACCAATGTACTTCACCTTGAACGT
TATGGGCAAATCCTCCACATTGACCTGGCTGTCCAGATCGGTGGTACTAC
TGTTGTTGGAGGCCATGTCGACTGATAACT

BS13049.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14968-PB 600 CG14968-RB 1..600 616..17 2975 99.8 Minus
CG14968-PC 600 CG14968-RC 1..600 616..17 2975 99.8 Minus
CG14968-PD 600 CG14968-RD 1..600 616..17 2975 99.8 Minus
CG14968-PE 600 CG14968-RE 1..600 616..17 2975 99.8 Minus
CG14968-PA 600 CG14968-RA 1..600 616..17 2975 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG14968-RA 958 CG14968-RA 172..771 616..17 2985 99.8 Minus
CG14968-RE 1053 CG14968-RE 267..866 616..17 2985 99.8 Minus
CG14968-RD 1027 CG14968-RD 241..840 616..17 2985 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3299523..3300049 17..543 2620 99.8 Plus
3L 28110227 3L 3300719..3300797 538..616 395 100 Plus
Blast to na_te.dros performed 2015-01-31 10:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 3260..3313 64..14 109 72.2 Minus

BS13049.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:36 Download gff for BS13049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14968-PA 1..600 17..616 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:22 Download gff for BS13049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 231..840 17..624 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:18 Download gff for BS13049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 231..840 17..624 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:18 Download gff for BS13049.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3299523..3300047 17..541 99 <- Plus
3L 3300723..3300801 542..624 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:22 Download gff for BS13049.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3299523..3300047 17..541 99 <- Plus
arm_3L 3300723..3300801 542..624 95   Plus

BS13049.5prime Sequence

630 bp (630 high quality bases) assembled on 2006-10-13

> BS13049.5prime
GAAGTTATCAGTCGACATGGCCTCCAACAACAGTAGTACCACCGATCTGG
ACAGCCAGGTCAATGTGGAGGATTTGCCCATAACGTTCAAGGTGAAGTAC
ATTGGTTCCGAAGTGGCACGTGGCTTATGGGGCATTAAGTATACGCGTCG
TCCGGTGGACATAATGGTGGGCGTGGCCAAGAACCTGCCGCCCAATAAGG
TGCTGCCCAACTGCGAACTGAAGGTGTCCACCGACGGAGTCCAGCTGGAG
ATCATATCGCCAAAGGCCAGCATCAATCACTGGAGCTATCCCATCGACAC
GATCTCGTATGGCGTTCAGGACCTGGTCTACACAAGGGTCTTTGCCATGA
TCGTGGTGAAGGACGAGTCGAGTCCGCATCCCTTTGAGGTTCACGCCTTC
GTGTGCGACAGTCGTGCGATGGCGCGGAAGTTGACCTTTGCCCTGGCCGC
CGCCTTCCAGGATTACTCGCGACGGGTCAAGGAGGCAACCGGTGAGGAGG
AGGGCGAGGCCACGCCCAGCGACACTATTACACCCACGCGACACAAGTTC
GCCATCGATCTGCGAACGCCGGAGGAAATCCAGGCTGGCGAACTGGAGCA
AGAAACGGAGGCGTAGAAGCTTTCTAGACC

BS13049.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14968-PB 600 CG14968-RB 1..600 17..616 2975 99.8 Plus
CG14968-PC 600 CG14968-RC 1..600 17..616 2975 99.8 Plus
CG14968-PD 600 CG14968-RD 1..600 17..616 2975 99.8 Plus
CG14968-PE 600 CG14968-RE 1..600 17..616 2975 99.8 Plus
CG14968-PA 600 CG14968-RA 1..600 17..616 2975 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14968-RA 958 CG14968-RA 172..771 17..616 2985 99.8 Plus
CG14968-RE 1053 CG14968-RE 267..866 17..616 2985 99.8 Plus
CG14968-RD 1027 CG14968-RD 241..840 17..616 2985 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3299523..3300049 616..90 2620 99.8 Minus
3L 28110227 3L 3300719..3300797 95..17 395 100 Minus
Blast to na_te.dros performed 2015-02-12 11:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 3260..3313 569..619 109 72.2 Plus

BS13049.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:37 Download gff for BS13049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14968-PA 1..600 17..616 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:16 Download gff for BS13049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 231..840 9..616 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:44:36 Download gff for BS13049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 231..840 9..616 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:44:36 Download gff for BS13049.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3299523..3300047 92..616 99 <- Minus
3L 3300723..3300801 9..91 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:16 Download gff for BS13049.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3299523..3300047 92..616 99 <- Minus
arm_3L 3300723..3300801 9..91 95   Minus

BS13049.complete Sequence

632 bp assembled on 2006-11-01

GenBank Submission: FJ637367

> BS13049.complete
GAAGTTATCAGTCGACATGGCCTCCAACAACAGTAGTACCACCGATCTGG
ACAGCCAGGTCAATGTGGAGGATTTGCCCATAACGTTCAAGGTGAAGTAC
ATTGGTTCCGAAGTGGCACGTGGCTTATGGGGCATTAAGTATACGCGTCG
TCCGGTGGACATAATGGTGGGCGTGGCCAAGAACCTGCCGCCCAATAAGG
TGCTGCCCAACTGCGAACTGAAGGTGTCCACCGACGGAGTCCAGCTGGAG
ATCATATCGCCAAAGGCCAGCATCAATCACTGGAGCTATCCCATCGACAC
GATCTCGTATGGCGTTCAGGACCTGGTCTACACAAGGGTCTTTGCCATGA
TCGTGGTGAAGGACGAGTCGAGTCCGCATCCCTTTGAGGTTCACGCCTTC
GTGTGCGACAGTCGTGCGATGGCGCGGAAGTTGACCTTTGCCCTGGCCGC
CGCCTTCCAGGATTACTCGCGACGGGTCAAGGAGGCAACCGGTGAGGAGG
AGGGCGAGGCCACGCCCAGCGACACTATTACACCCACGCGACACAAGTTC
GCCATCGATCTGCGAACGCCGGAGGAAATCCAGGCTGGCGAACTGGAGCA
AGAAACGGAGGCGTAGAAGCTTTCTAGACCAT

BS13049.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG14968-RA 600 CG14968-PA 1..600 17..616 2985 99.8 Plus
CG14968-RE 600 CG14968-PE 1..600 17..616 2985 99.8 Plus
CG14968-RD 600 CG14968-PD 1..600 17..616 2985 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14968-RA 958 CG14968-RA 172..771 17..616 2985 99.8 Plus
CG14968-RE 1053 CG14968-RE 267..866 17..616 2985 99.8 Plus
CG14968-RD 1027 CG14968-RD 241..840 17..616 2985 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3299523..3300049 616..90 2620 99.8 Minus
3L 28110227 3L 3300719..3300797 95..17 395 100 Minus
Blast to na_te.dros performed 2014-11-28 00:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 3260..3313 569..619 109 72.2 Plus

BS13049.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:42 Download gff for BS13049.complete
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 1..600 17..616 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:42 Download gff for BS13049.complete
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 227..836 9..616 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:31 Download gff for BS13049.complete
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 241..840 17..616 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:42 Download gff for BS13049.complete
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 227..836 9..616 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:28 Download gff for BS13049.complete
Subject Subject Range Query Range Percent Splice Strand
CG14968-RD 241..840 17..616 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:28 Download gff for BS13049.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3299523..3300047 92..616 99 <- Minus
3L 3300723..3300797 17..91 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:31 Download gff for BS13049.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3299523..3300047 92..616 99 <- Minus
arm_3L 3300723..3300797 17..91 100   Minus

BS13049.pep Sequence

Translation from 16 to 615

> BS13049.pep
MASNNSSTTDLDSQVNVEDLPITFKVKYIGSEVARGLWGIKYTRRPVDIM
VGVAKNLPPNKVLPNCELKVSTDGVQLEIISPKASINHWSYPIDTISYGV
QDLVYTRVFAMIVVKDESSPHPFEVHAFVCDSRAMARKLTFALAAAFQDY
SRRVKEATGEEEGEATPSDTITPTRHKFAIDLRTPEEIQAGELEQETEA*

BS13049.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14968-PA 199 CG14968-PA 1..199 1..199 1023 100 Plus
CG14968-PE 199 CG14968-PE 1..199 1..199 1023 100 Plus
CG14968-PD 199 CG14968-PD 1..199 1..199 1023 100 Plus
CG14968-PC 199 CG14968-PC 1..199 1..199 1023 100 Plus
CG14968-PB 199 CG14968-PB 1..199 1..199 1023 100 Plus