Clone Sequence Records
BS13049.3prime Sequence
630 bp (630 high quality bases) assembled on 2006-10-13
> BS13049.3prime
ATGGTCTAGAAAGCTTCTACGCCTCCGTTTCTTGCTCCAGTTCGCCAGCC
TGGATTTCCTCCGGCGTTCGCAGATCGATGGCGAACTTGTGTCGCGTGGG
TGTAATAGTGTCGCTGGGCGTGGCCTCGCCCTCCTCCTCACCGGTTGCCT
CCTTGACCCGTCGCGAGTAATCCTGGAAGGCGGCGGCCAGGGCAAAGGTC
AACTTCCGCGCCATCGCACGACTGTCGCACACGAAGGCGTGAACCTCAAA
GGGATGCGGACTCGACTCGTCCTTCACCACGATCATGGCAAAGACCCTTG
TGTAGACCAGGTCCTGAACGCCATACGAGATCGTGTCGATGGGATAGCTC
CAGTGATTGATGCTGGCCTTTGGCGATATGATCTCCAGCTGGACTCCGTC
GGTGGACACCTTCAGTTCGCAGTTGGGCAGCACCTTATTGGGCGGCAGGT
TCTTGGCCACGCCCACCATTATGTCCACCGGACGACGCGTATACTTAATG
CCCCATAAGCCACGTGCCACTTCGGAACCAATGTACTTCACCTTGAACGT
TATGGGCAAATCCTCCACATTGACCTGGCTGTCCAGATCGGTGGTACTAC
TGTTGTTGGAGGCCATGTCGACTGATAACT
BS13049.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14968-PB | 600 | CG14968-RB | 1..600 | 616..17 | 2975 | 99.8 | Minus |
CG14968-PC | 600 | CG14968-RC | 1..600 | 616..17 | 2975 | 99.8 | Minus |
CG14968-PD | 600 | CG14968-RD | 1..600 | 616..17 | 2975 | 99.8 | Minus |
CG14968-PE | 600 | CG14968-RE | 1..600 | 616..17 | 2975 | 99.8 | Minus |
CG14968-PA | 600 | CG14968-RA | 1..600 | 616..17 | 2975 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:21:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14968-RA | 958 | CG14968-RA | 172..771 | 616..17 | 2985 | 99.8 | Minus |
CG14968-RE | 1053 | CG14968-RE | 267..866 | 616..17 | 2985 | 99.8 | Minus |
CG14968-RD | 1027 | CG14968-RD | 241..840 | 616..17 | 2985 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:21:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3299523..3300049 | 17..543 | 2620 | 99.8 | Plus |
3L | 28110227 | 3L | 3300719..3300797 | 538..616 | 395 | 100 | Plus |
Blast to na_te.dros performed 2015-01-31 10:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 3260..3313 | 64..14 | 109 | 72.2 | Minus |
BS13049.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:36 Download gff for
BS13049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-PA | 1..600 | 17..616 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:22 Download gff for
BS13049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-RD | 231..840 | 17..624 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:18 Download gff for
BS13049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-RD | 231..840 | 17..624 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:18 Download gff for
BS13049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3299523..3300047 | 17..541 | 99 | <- | Plus |
3L | 3300723..3300801 | 542..624 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:22 Download gff for
BS13049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3299523..3300047 | 17..541 | 99 | <- | Plus |
arm_3L | 3300723..3300801 | 542..624 | 95 | | Plus |
BS13049.5prime Sequence
630 bp (630 high quality bases) assembled on 2006-10-13
> BS13049.5prime
GAAGTTATCAGTCGACATGGCCTCCAACAACAGTAGTACCACCGATCTGG
ACAGCCAGGTCAATGTGGAGGATTTGCCCATAACGTTCAAGGTGAAGTAC
ATTGGTTCCGAAGTGGCACGTGGCTTATGGGGCATTAAGTATACGCGTCG
TCCGGTGGACATAATGGTGGGCGTGGCCAAGAACCTGCCGCCCAATAAGG
TGCTGCCCAACTGCGAACTGAAGGTGTCCACCGACGGAGTCCAGCTGGAG
ATCATATCGCCAAAGGCCAGCATCAATCACTGGAGCTATCCCATCGACAC
GATCTCGTATGGCGTTCAGGACCTGGTCTACACAAGGGTCTTTGCCATGA
TCGTGGTGAAGGACGAGTCGAGTCCGCATCCCTTTGAGGTTCACGCCTTC
GTGTGCGACAGTCGTGCGATGGCGCGGAAGTTGACCTTTGCCCTGGCCGC
CGCCTTCCAGGATTACTCGCGACGGGTCAAGGAGGCAACCGGTGAGGAGG
AGGGCGAGGCCACGCCCAGCGACACTATTACACCCACGCGACACAAGTTC
GCCATCGATCTGCGAACGCCGGAGGAAATCCAGGCTGGCGAACTGGAGCA
AGAAACGGAGGCGTAGAAGCTTTCTAGACC
BS13049.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14968-PB | 600 | CG14968-RB | 1..600 | 17..616 | 2975 | 99.8 | Plus |
CG14968-PC | 600 | CG14968-RC | 1..600 | 17..616 | 2975 | 99.8 | Plus |
CG14968-PD | 600 | CG14968-RD | 1..600 | 17..616 | 2975 | 99.8 | Plus |
CG14968-PE | 600 | CG14968-RE | 1..600 | 17..616 | 2975 | 99.8 | Plus |
CG14968-PA | 600 | CG14968-RA | 1..600 | 17..616 | 2975 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14968-RA | 958 | CG14968-RA | 172..771 | 17..616 | 2985 | 99.8 | Plus |
CG14968-RE | 1053 | CG14968-RE | 267..866 | 17..616 | 2985 | 99.8 | Plus |
CG14968-RD | 1027 | CG14968-RD | 241..840 | 17..616 | 2985 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3299523..3300049 | 616..90 | 2620 | 99.8 | Minus |
3L | 28110227 | 3L | 3300719..3300797 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:22:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 3260..3313 | 569..619 | 109 | 72.2 | Plus |
BS13049.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:37 Download gff for
BS13049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-PA | 1..600 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:16 Download gff for
BS13049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-RD | 231..840 | 9..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:44:36 Download gff for
BS13049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-RD | 231..840 | 9..616 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:44:36 Download gff for
BS13049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3299523..3300047 | 92..616 | 99 | <- | Minus |
3L | 3300723..3300801 | 9..91 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:16 Download gff for
BS13049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3299523..3300047 | 92..616 | 99 | <- | Minus |
arm_3L | 3300723..3300801 | 9..91 | 95 | | Minus |
BS13049.complete Sequence
632 bp assembled on 2006-11-01
GenBank Submission: FJ637367
> BS13049.complete
GAAGTTATCAGTCGACATGGCCTCCAACAACAGTAGTACCACCGATCTGG
ACAGCCAGGTCAATGTGGAGGATTTGCCCATAACGTTCAAGGTGAAGTAC
ATTGGTTCCGAAGTGGCACGTGGCTTATGGGGCATTAAGTATACGCGTCG
TCCGGTGGACATAATGGTGGGCGTGGCCAAGAACCTGCCGCCCAATAAGG
TGCTGCCCAACTGCGAACTGAAGGTGTCCACCGACGGAGTCCAGCTGGAG
ATCATATCGCCAAAGGCCAGCATCAATCACTGGAGCTATCCCATCGACAC
GATCTCGTATGGCGTTCAGGACCTGGTCTACACAAGGGTCTTTGCCATGA
TCGTGGTGAAGGACGAGTCGAGTCCGCATCCCTTTGAGGTTCACGCCTTC
GTGTGCGACAGTCGTGCGATGGCGCGGAAGTTGACCTTTGCCCTGGCCGC
CGCCTTCCAGGATTACTCGCGACGGGTCAAGGAGGCAACCGGTGAGGAGG
AGGGCGAGGCCACGCCCAGCGACACTATTACACCCACGCGACACAAGTTC
GCCATCGATCTGCGAACGCCGGAGGAAATCCAGGCTGGCGAACTGGAGCA
AGAAACGGAGGCGTAGAAGCTTTCTAGACCAT
BS13049.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14968-RA | 600 | CG14968-PA | 1..600 | 17..616 | 2985 | 99.8 | Plus |
CG14968-RE | 600 | CG14968-PE | 1..600 | 17..616 | 2985 | 99.8 | Plus |
CG14968-RD | 600 | CG14968-PD | 1..600 | 17..616 | 2985 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14968-RA | 958 | CG14968-RA | 172..771 | 17..616 | 2985 | 99.8 | Plus |
CG14968-RE | 1053 | CG14968-RE | 267..866 | 17..616 | 2985 | 99.8 | Plus |
CG14968-RD | 1027 | CG14968-RD | 241..840 | 17..616 | 2985 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3299523..3300049 | 616..90 | 2620 | 99.8 | Minus |
3L | 28110227 | 3L | 3300719..3300797 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 3260..3313 | 569..619 | 109 | 72.2 | Plus |
BS13049.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:42 Download gff for
BS13049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-RD | 1..600 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:42 Download gff for
BS13049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-RD | 227..836 | 9..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:31 Download gff for
BS13049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-RD | 241..840 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:42 Download gff for
BS13049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-RD | 227..836 | 9..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:28 Download gff for
BS13049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14968-RD | 241..840 | 17..616 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:28 Download gff for
BS13049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3299523..3300047 | 92..616 | 99 | <- | Minus |
3L | 3300723..3300797 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:31 Download gff for
BS13049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3299523..3300047 | 92..616 | 99 | <- | Minus |
arm_3L | 3300723..3300797 | 17..91 | 100 | | Minus |
BS13049.pep Sequence
Translation from 16 to 615
> BS13049.pep
MASNNSSTTDLDSQVNVEDLPITFKVKYIGSEVARGLWGIKYTRRPVDIM
VGVAKNLPPNKVLPNCELKVSTDGVQLEIISPKASINHWSYPIDTISYGV
QDLVYTRVFAMIVVKDESSPHPFEVHAFVCDSRAMARKLTFALAAAFQDY
SRRVKEATGEEEGEATPSDTITPTRHKFAIDLRTPEEIQAGELEQETEA*
BS13049.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14968-PA | 199 | CG14968-PA | 1..199 | 1..199 | 1023 | 100 | Plus |
CG14968-PE | 199 | CG14968-PE | 1..199 | 1..199 | 1023 | 100 | Plus |
CG14968-PD | 199 | CG14968-PD | 1..199 | 1..199 | 1023 | 100 | Plus |
CG14968-PC | 199 | CG14968-PC | 1..199 | 1..199 | 1023 | 100 | Plus |
CG14968-PB | 199 | CG14968-PB | 1..199 | 1..199 | 1023 | 100 | Plus |