Clone Sequence Records
BS13051.5prime Sequence
510 bp (510 high quality bases) assembled on 2006-10-13
> BS13051.5prime
GAAGTTATCAGTCGACATGGCTGAGTTGGACGATCAATTCGAGACCACGG
ATTCCGGCGCATCGACGACCTATCCCATGCAATGTTCGGCATTGCGCAAA
AACGGATTCGTCATGCTGAAGTCGCGGCCATGCAAGATTGTCGAGATGTC
TACTTCAAAGACTGGAAAGCACGGACACGCCAAGGTTCATATGGTTGGCA
TTGATATTTTCTCTAACAAGAAATATGAAGATATTTGCCCATCTACTCAT
AACATGGATGTGCCCAATGTCAAAAGGGAGGACCTTCAGTTGATTGCTAT
TAGTGACGATAGCTTCCTTACATTGATGACCGAGAGCGGAGATCTGCGTG
AAGACTTGAAGGTTCCAGAGGGCGAATTGGGTGAACAATTGCGTTTAGAT
TTTGATAGTGGCAAGGACTTACTGTGCACCGTTCTCAAGGCGTGCGGAGA
GGAGTGCGTTATCGCAATTAAAACCAATACTGCTCTGGACAAATAGAAGC
TTTCTAGACC
BS13051.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3186-PB | 480 | eIF-5A-RB | 1..480 | 17..496 | 2400 | 100 | Plus |
CG3186-PA | 480 | eIF-5A-RA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-5A-RA | 752 | CG3186-RA | 50..536 | 10..496 | 2405 | 99.6 | Plus |
eIF-5A-RB | 747 | CG3186-RB | 108..587 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24058486..24058691 | 17..222 | 1030 | 100 | Plus |
2R | 25286936 | 2R | 24058932..24059133 | 223..424 | 1010 | 100 | Plus |
2R | 25286936 | 2R | 24059195..24059267 | 424..496 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:29:17 has no hits.
BS13051.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:38 Download gff for
BS13051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3186-PA | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:01 Download gff for
BS13051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-5A-RA | 50..538 | 10..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:55 Download gff for
BS13051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-5A-RA | 50..538 | 10..500 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:55 Download gff for
BS13051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24058483..24058691 | 14..222 | 99 | -> | Plus |
2R | 24058932..24059133 | 223..424 | 100 | -> | Plus |
2R | 24059196..24059269 | 425..500 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:01 Download gff for
BS13051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19946006..19946214 | 14..222 | 99 | -> | Plus |
arm_2R | 19946455..19946656 | 223..424 | 100 | -> | Plus |
arm_2R | 19946719..19946792 | 425..500 | 97 | | Plus |
BS13051.3prime Sequence
510 bp (510 high quality bases) assembled on 2006-10-13
> BS13051.3prime
ATGGTCTAGAAAGCTTCTATTTGTCCAGAGCAGTATTGGTTTTAATTGCG
ATAACGCACTCCTCTCCGCACGCCTTGAGAACGGTGCACAGTAAGTCCTT
GCCACTATCAAAATCTAAACGCAATTGTTCACCCAATTCGCCCTCTGGAA
CCTTCAAGTCTTCACGCAGATCTCCGCTCTCGGTCATCAATGTAAGGAAG
CTATCGTCACTAATAGCAATCAACTGAAGGTCCTCCCTTTTGACATTGGG
CACATCCATGTTATGAGTAGATGGGCAAATATCTTCATATTTCTTGTTAG
AGAAAATATCAATGCCAACCATATGAACCTTGGCGTGTCCGTGCTTTCCA
GTCTTTGAAGTAGACATCTCGACAATCTTGCATGGCCGCGACTTCAGCAT
GACGAATCCGTTTTTGCGCAATGCCGAACATTGCATGGGATAGGTCGTCG
ATGCGCCGGAATCCGTGGTCTCGAATTGATCGTCCAACTCAGCCATGTCG
ACTGATAACT
BS13051.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3186-PB | 480 | eIF-5A-RB | 1..480 | 496..17 | 2400 | 100 | Minus |
CG3186-PA | 480 | eIF-5A-RA | 1..480 | 496..17 | 2400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:43:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-5A-RA | 752 | CG3186-RA | 50..536 | 503..17 | 2405 | 99.6 | Minus |
eIF-5A-RB | 747 | CG3186-RB | 108..587 | 496..17 | 2400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:42:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24058486..24058691 | 496..291 | 1030 | 100 | Minus |
2R | 25286936 | 2R | 24058932..24059133 | 290..89 | 1010 | 100 | Minus |
2R | 25286936 | 2R | 24059195..24059267 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:42:55 has no hits.
BS13051.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:38 Download gff for
BS13051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3186-PA | 1..480 | 17..496 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:41 Download gff for
BS13051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-5A-RA | 50..538 | 13..503 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:12 Download gff for
BS13051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-5A-RA | 50..538 | 13..503 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:12 Download gff for
BS13051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24058483..24058691 | 291..499 | 99 | -> | Minus |
2R | 24058932..24059133 | 89..290 | 100 | -> | Minus |
2R | 24059196..24059269 | 13..88 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:41 Download gff for
BS13051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19946006..19946214 | 291..499 | 99 | -> | Minus |
arm_2R | 19946455..19946656 | 89..290 | 100 | -> | Minus |
arm_2R | 19946719..19946792 | 13..88 | 97 | | Minus |
BS13051.complete Sequence
512 bp assembled on 2006-11-01
GenBank Submission: FJ637368
> BS13051.complete
GAAGTTATCAGTCGACATGGCTGAGTTGGACGATCAATTCGAGACCACGG
ATTCCGGCGCATCGACGACCTATCCCATGCAATGTTCGGCATTGCGCAAA
AACGGATTCGTCATGCTGAAGTCGCGGCCATGCAAGATTGTCGAGATGTC
TACTTCAAAGACTGGAAAGCACGGACACGCCAAGGTTCATATGGTTGGCA
TTGATATTTTCTCTAACAAGAAATATGAAGATATTTGCCCATCTACTCAT
AACATGGATGTGCCCAATGTCAAAAGGGAGGACCTTCAGTTGATTGCTAT
TAGTGACGATAGCTTCCTTACATTGATGACCGAGAGCGGAGATCTGCGTG
AAGACTTGAAGGTTCCAGAGGGCGAATTGGGTGAACAATTGCGTTTAGAT
TTTGATAGTGGCAAGGACTTACTGTGCACCGTTCTCAAGGCGTGCGGAGA
GGAGTGCGTTATCGCAATTAAAACCAATACTGCTCTGGACAAATAGAAGC
TTTCTAGACCAT
BS13051.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:55:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-5A-RA | 480 | CG3186-PA | 1..480 | 17..496 | 2400 | 100 | Plus |
eIF-5A-RB | 480 | CG3186-PB | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-5A-RA | 752 | CG3186-RA | 50..536 | 10..496 | 2405 | 99.6 | Plus |
eIF-5A-RB | 747 | CG3186-RB | 108..587 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24058486..24058691 | 17..222 | 1030 | 100 | Plus |
2R | 25286936 | 2R | 24058932..24059133 | 223..424 | 1010 | 100 | Plus |
2R | 25286936 | 2R | 24059195..24059267 | 424..496 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:55:52 has no hits.
BS13051.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:43 Download gff for
BS13051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-5A-RA | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:48 Download gff for
BS13051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-5A-RA | 79..567 | 10..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:35 Download gff for
BS13051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-5A-RA | 57..530 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:43 Download gff for
BS13051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-5A-RA | 79..567 | 10..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:32 Download gff for
BS13051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-5A-RA | 57..530 | 17..490 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:32 Download gff for
BS13051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24058486..24058691 | 17..222 | 100 | -> | Plus |
2R | 24058932..24059133 | 223..424 | 100 | -> | Plus |
2R | 24059196..24059261 | 425..490 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:35 Download gff for
BS13051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19946009..19946214 | 17..222 | 100 | -> | Plus |
arm_2R | 19946455..19946656 | 223..424 | 100 | -> | Plus |
arm_2R | 19946719..19946784 | 425..490 | 100 | | Plus |
BS13051.pep Sequence
Translation from 16 to 495
> BS13051.pep
MAELDDQFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTG
KHGHAKVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSF
LTLMTESGDLREDLKVPEGELGEQLRLDFDSGKDLLCTVLKACGEECVIA
IKTNTALDK*
BS13051.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-5A-PA | 159 | CG3186-PA | 1..159 | 1..159 | 827 | 100 | Plus |
eIF-5A-PB | 159 | CG3186-PB | 1..159 | 1..159 | 827 | 100 | Plus |