Clone BS13051 Report

Search the DGRC for BS13051

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:51
Vector:pDNR-Dual
Associated Gene/TranscripteIF-5A-RA
Protein status:BS13051.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13051.5prime Sequence

510 bp (510 high quality bases) assembled on 2006-10-13

> BS13051.5prime
GAAGTTATCAGTCGACATGGCTGAGTTGGACGATCAATTCGAGACCACGG
ATTCCGGCGCATCGACGACCTATCCCATGCAATGTTCGGCATTGCGCAAA
AACGGATTCGTCATGCTGAAGTCGCGGCCATGCAAGATTGTCGAGATGTC
TACTTCAAAGACTGGAAAGCACGGACACGCCAAGGTTCATATGGTTGGCA
TTGATATTTTCTCTAACAAGAAATATGAAGATATTTGCCCATCTACTCAT
AACATGGATGTGCCCAATGTCAAAAGGGAGGACCTTCAGTTGATTGCTAT
TAGTGACGATAGCTTCCTTACATTGATGACCGAGAGCGGAGATCTGCGTG
AAGACTTGAAGGTTCCAGAGGGCGAATTGGGTGAACAATTGCGTTTAGAT
TTTGATAGTGGCAAGGACTTACTGTGCACCGTTCTCAAGGCGTGCGGAGA
GGAGTGCGTTATCGCAATTAAAACCAATACTGCTCTGGACAAATAGAAGC
TTTCTAGACC

BS13051.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3186-PB 480 eIF-5A-RB 1..480 17..496 2400 100 Plus
CG3186-PA 480 eIF-5A-RA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-5A-RA 752 CG3186-RA 50..536 10..496 2405 99.6 Plus
eIF-5A-RB 747 CG3186-RB 108..587 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24058486..24058691 17..222 1030 100 Plus
2R 25286936 2R 24058932..24059133 223..424 1010 100 Plus
2R 25286936 2R 24059195..24059267 424..496 365 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:29:17 has no hits.

BS13051.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:38 Download gff for BS13051.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3186-PA 1..480 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:01 Download gff for BS13051.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF-5A-RA 50..538 10..500 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:55 Download gff for BS13051.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF-5A-RA 50..538 10..500 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:55 Download gff for BS13051.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24058483..24058691 14..222 99 -> Plus
2R 24058932..24059133 223..424 100 -> Plus
2R 24059196..24059269 425..500 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:01 Download gff for BS13051.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19946006..19946214 14..222 99 -> Plus
arm_2R 19946455..19946656 223..424 100 -> Plus
arm_2R 19946719..19946792 425..500 97   Plus

BS13051.3prime Sequence

510 bp (510 high quality bases) assembled on 2006-10-13

> BS13051.3prime
ATGGTCTAGAAAGCTTCTATTTGTCCAGAGCAGTATTGGTTTTAATTGCG
ATAACGCACTCCTCTCCGCACGCCTTGAGAACGGTGCACAGTAAGTCCTT
GCCACTATCAAAATCTAAACGCAATTGTTCACCCAATTCGCCCTCTGGAA
CCTTCAAGTCTTCACGCAGATCTCCGCTCTCGGTCATCAATGTAAGGAAG
CTATCGTCACTAATAGCAATCAACTGAAGGTCCTCCCTTTTGACATTGGG
CACATCCATGTTATGAGTAGATGGGCAAATATCTTCATATTTCTTGTTAG
AGAAAATATCAATGCCAACCATATGAACCTTGGCGTGTCCGTGCTTTCCA
GTCTTTGAAGTAGACATCTCGACAATCTTGCATGGCCGCGACTTCAGCAT
GACGAATCCGTTTTTGCGCAATGCCGAACATTGCATGGGATAGGTCGTCG
ATGCGCCGGAATCCGTGGTCTCGAATTGATCGTCCAACTCAGCCATGTCG
ACTGATAACT

BS13051.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3186-PB 480 eIF-5A-RB 1..480 496..17 2400 100 Minus
CG3186-PA 480 eIF-5A-RA 1..480 496..17 2400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-5A-RA 752 CG3186-RA 50..536 503..17 2405 99.6 Minus
eIF-5A-RB 747 CG3186-RB 108..587 496..17 2400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24058486..24058691 496..291 1030 100 Minus
2R 25286936 2R 24058932..24059133 290..89 1010 100 Minus
2R 25286936 2R 24059195..24059267 89..17 365 100 Minus
Blast to na_te.dros performed on 2015-02-02 18:42:55 has no hits.

BS13051.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:38 Download gff for BS13051.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3186-PA 1..480 17..496 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:41 Download gff for BS13051.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF-5A-RA 50..538 13..503 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:12 Download gff for BS13051.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF-5A-RA 50..538 13..503 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:12 Download gff for BS13051.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24058483..24058691 291..499 99 -> Minus
2R 24058932..24059133 89..290 100 -> Minus
2R 24059196..24059269 13..88 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:41 Download gff for BS13051.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19946006..19946214 291..499 99 -> Minus
arm_2R 19946455..19946656 89..290 100 -> Minus
arm_2R 19946719..19946792 13..88 97   Minus

BS13051.complete Sequence

512 bp assembled on 2006-11-01

GenBank Submission: FJ637368

> BS13051.complete
GAAGTTATCAGTCGACATGGCTGAGTTGGACGATCAATTCGAGACCACGG
ATTCCGGCGCATCGACGACCTATCCCATGCAATGTTCGGCATTGCGCAAA
AACGGATTCGTCATGCTGAAGTCGCGGCCATGCAAGATTGTCGAGATGTC
TACTTCAAAGACTGGAAAGCACGGACACGCCAAGGTTCATATGGTTGGCA
TTGATATTTTCTCTAACAAGAAATATGAAGATATTTGCCCATCTACTCAT
AACATGGATGTGCCCAATGTCAAAAGGGAGGACCTTCAGTTGATTGCTAT
TAGTGACGATAGCTTCCTTACATTGATGACCGAGAGCGGAGATCTGCGTG
AAGACTTGAAGGTTCCAGAGGGCGAATTGGGTGAACAATTGCGTTTAGAT
TTTGATAGTGGCAAGGACTTACTGTGCACCGTTCTCAAGGCGTGCGGAGA
GGAGTGCGTTATCGCAATTAAAACCAATACTGCTCTGGACAAATAGAAGC
TTTCTAGACCAT

BS13051.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-5A-RA 480 CG3186-PA 1..480 17..496 2400 100 Plus
eIF-5A-RB 480 CG3186-PB 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-5A-RA 752 CG3186-RA 50..536 10..496 2405 99.6 Plus
eIF-5A-RB 747 CG3186-RB 108..587 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24058486..24058691 17..222 1030 100 Plus
2R 25286936 2R 24058932..24059133 223..424 1010 100 Plus
2R 25286936 2R 24059195..24059267 424..496 365 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:55:52 has no hits.

BS13051.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:43 Download gff for BS13051.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-5A-RA 1..480 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:48 Download gff for BS13051.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-5A-RA 79..567 10..500 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:35 Download gff for BS13051.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-5A-RA 57..530 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:43 Download gff for BS13051.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-5A-RA 79..567 10..500 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:32 Download gff for BS13051.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-5A-RA 57..530 17..490 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:32 Download gff for BS13051.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24058486..24058691 17..222 100 -> Plus
2R 24058932..24059133 223..424 100 -> Plus
2R 24059196..24059261 425..490 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:35 Download gff for BS13051.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19946009..19946214 17..222 100 -> Plus
arm_2R 19946455..19946656 223..424 100 -> Plus
arm_2R 19946719..19946784 425..490 100   Plus

BS13051.pep Sequence

Translation from 16 to 495

> BS13051.pep
MAELDDQFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTG
KHGHAKVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSF
LTLMTESGDLREDLKVPEGELGEQLRLDFDSGKDLLCTVLKACGEECVIA
IKTNTALDK*

BS13051.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-5A-PA 159 CG3186-PA 1..159 1..159 827 100 Plus
eIF-5A-PB 159 CG3186-PB 1..159 1..159 827 100 Plus