Clone Sequence Records
BS13052.3prime Sequence
700 bp (685 high quality bases) assembled on 2006-10-13
> BS13052.3prime
ATGGTCTAGAAAGCTTTTAGTCTATTTTCACATTGGAATAGATTTTGCGC
ACGAAGAGATTCGTGCCCACATAGCCGACGGTGCCGCAGATAATGCCCAA
GGCGCCGCTGAAGAGTGCCATGTAGCCAAAGTAGAAGGCCGTTTGGAACA
GACCGAACATTTTGGTTTTAAAGAAGAAGTAATAGAAGGAATAGGCGTAC
ACGTAAATCGACGTGGAGCCCGCAGCCATGAAACTCGTCCACTGCCATCG
GTAATCTTCGGCATTTAGCAGGAAGTAGGTGCACACGATGGTGACGCACA
CGGTGACCACAGTCAGGATGCTGAAAACCAGCAACATGAAGCCGTAGACG
TAGTAGATCTTGTACGCCCAGAAGGAGGTGAAGATGAAGTACATCTCAAT
GAAGATGGATCCAAAGGGCAAGACACCGCCAAGAAGCACAATAATCAGTG
GCTCCATGTACCACTTCTTTTCGGGAATGGGTCGTGGCACCGCGTTGACG
CGGCATGGAAAGTCTGGTTGGCCGTCCAGATTGCGGCCCACGACAGTACC
CACCAGAGTCAAGGGCAGGATGACAAACAGGCAGATGCAAGTGACCGCCA
CCATGGTACCGAAGGGAATGGCTCTCGACGCGTGATATCCAATGGCAATG
AAGTTGATCAGGAAAGCCGTGCCGCACACAGCCACTGGAACTGTAAAAGC
BS13052.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:20:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10590-PA | 1779 | CG10590-RA | 1096..1779 | 700..17 | 3420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10590-RA | 2653 | CG10590-RA | 1277..1964 | 700..13 | 3425 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:43:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5601990..5602528 | 162..700 | 2695 | 100 | Plus |
| 3L | 28110227 | 3L | 5601785..5601933 | 13..161 | 730 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:43:23 has no hits.
BS13052.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:39 Download gff for
BS13052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-PA | 1096..1779 | 17..700 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:53:54 Download gff for
BS13052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 1277..1964 | 13..700 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:20 Download gff for
BS13052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 1277..1964 | 13..700 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:20 Download gff for
BS13052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5601785..5601933 | 13..161 | 99 | <- | Plus |
| 3L | 5601990..5602528 | 162..700 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:53:54 Download gff for
BS13052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5594885..5595033 | 13..161 | 99 | <- | Plus |
| arm_3L | 5595090..5595628 | 162..700 | 100 | | Plus |
BS13052.5prime Sequence
732 bp (730 high quality bases) assembled on 2006-10-13
> BS13052.5prime
GAAGTTATCAGTCGACATGGGCAGCAGCGCCACGCAAACCACGGTGCCGT
TCCGTGCAATTTGTTTATGTCTGCTGATCGCCAGCTGCTACGTGTCGCTC
TCCCAGGCAGATGAGCACAATCACAAGTACAATGACCGGGAGGAGGTGGT
ACTGTGGATGAACACGGTGGGCCCGTACCACAATCGGCAGGAGACGTACG
CGTACTTCTCTCTCCCCTTTTGCAGTGGCCAGAAGTCCTCGATATCGCAC
TACCACGAGACGCTGAGCGAGGCGCTGCAAGGAGTCGAGCTAGAGTTCAG
TGGCTACGAGATGGAGTTCAAGAGCGACGCCCCCAAATCGGTCATCTGCA
TGGTCACCTTGCAGGAGGAGAGCGCCAAGGCATTCACCTATGCCGTGAAG
AACGAGTACTGGTACCAGATGTACATCGATGGACTGCCCATTTGGGGAAA
AGTCGGTGAGCGCGACGAGCGCGATGGCAAGTACTATATCTTCACGCACA
AGAAGTTCGACATCGGCTACAATGGCCAGCAAATCGTGGATATCACCCTG
ACCACCGAGGGCCGCGAGGAACTCAAGCCGGGATCCCACATCAACTTCTC
CTACGAGGTCAACTGGAAGCCCAGCAAGGTGGAGTTCAAGAATCGATTCG
ACAAGTACCTGGATCCCAACTTCTTCCAGCACAGGATCCACTGGTTCAGC
ATCTTCAACAGCTTCATGATGGTCATCTTCCT
BS13052.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:20:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10590-PA | 1779 | CG10590-RA | 1..716 | 17..732 | 3580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10590-RA | 2653 | CG10590-RA | 182..897 | 17..732 | 3580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5603072..5603631 | 685..126 | 2800 | 100 | Minus |
| 3L | 28110227 | 3L | 5603688..5603798 | 127..17 | 555 | 100 | Minus |
| 3L | 28110227 | 3L | 5602908..5602955 | 732..685 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:57:13 has no hits.
BS13052.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:39 Download gff for
BS13052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-PA | 1..716 | 17..732 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:00:29 Download gff for
BS13052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 175..897 | 10..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:36:31 Download gff for
BS13052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 175..897 | 10..732 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:36:31 Download gff for
BS13052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5602908..5602954 | 686..732 | 100 | <- | Minus |
| 3L | 5603072..5603629 | 128..685 | 100 | <- | Minus |
| 3L | 5603688..5603805 | 10..127 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:00:29 Download gff for
BS13052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5596008..5596054 | 686..732 | 100 | <- | Minus |
| arm_3L | 5596172..5596729 | 128..685 | 100 | <- | Minus |
| arm_3L | 5596788..5596905 | 10..127 | 97 | | Minus |
BS13052.complete Sequence
1811 bp assembled on 2009-08-24
GenBank Submission: KX800157
> BS13052.complete
GAAGTTATCAGTCGACATGGGCAGCAGCGCCACGCAAACCACGGTGCCGT
TCCGTGCAATTTGTTTATGTCTGCTGATCGCCAGCTGCTACGTGTCGCTC
TCCCAGGCAGATGAGCACAATCACAAGTACAATGACCGGGAGGAGGTGGT
ACTGTGGATGAACACGGTGGGCCCGTACCACAATCGGCAGGAGACGTACG
CGTACTTCTCTCTCCCCTTTTGCAGTGGCCAGAAGTCCTCGATATCGCAC
TACCACGAGACGCTGAGCGAGGCGCTGCAAGGAGTCGAGCTAGAGTTCAG
TGGCTACGAGATGGAGTTCAAGAGCGACGCCCCCAAATCGGTCATCTGCA
TGGTCACCTTGCAGGAGGAGAGCGCCAAGGCATTCACCTATGCCGTGAAG
AACGAGTACTGGTACCAGATGTACATCGATGGACTGCCCATTTGGGGAAA
AGTCGGTGAGCGCGACGAGCGCGATGGCAAGTACTATATCTTCACGCACA
AGAAGTTCGACATCGGCTACAATGGCCAGCAAATCGTGGATATCACCCTG
ACCACCGAGGGCCGCGAGGAACTCAAGCCGGGATCCCACATCAACTTCTC
CTACGAGGTCAACTGGAAGCCCAGCAAGGTGGAGTTCAAGAATCGATTCG
ACAAGTACCTGGATCCCAACTTCTTCCAGCACAGGATCCACTGGTTCAGC
ATCTTCAACAGCTTCATGATGGTCATCTTCCTGGTGGGTCTGGTGTCCAT
GATTCTGATGCGAACTCTGCGCAAGGATTATGCTCGGTACAGTAAGGACG
AGGAAATCGACGACATGGAGCGAGATCTTGGTGATGAATACGGCTGGAAG
CAGGTGCATGGCGATGTCTTCCGTTCTCCGCCCAACACACTGCTCTTCTC
GGCGTTGGTGGGCGCTGGATACCAACTGATTTCGGTTGTATTCTGTGTGA
TCATGTTCGCCATAGTTGGTGAATTGTACACGGAACGCGGCTCCATGCTG
TCCACGGCTATATTTGTGTATGCCGCCACCTCACCAATCAATGGATACTT
TGGAGGATCGCTCTATGCCCGCCTGGGTGGACGCATGTGGATCCGACAGA
TGCTGGTGTCCGCTTTTACAGTTCCAGTGGCTGTGTGCGGCACGGCTTTC
CTGATCAACTTCATTGCCATTGGATATCACGCGTCGAGAGCCATTCCCTT
CGGTACCATGGTGGCGGTCACTTGCATCTGCCTGTTTGTCATCCTGCCCT
TGACTCTGGTGGGTACTGTCGTGGGCCGCAATCTGGACGGCCAACCAGAC
TTTCCATGCCGCGTCAACGCGGTGCCACGACCCATTCCCGAAAAGAAGTG
GTACATGGAGCCACTGATTATTGTGCTTCTTGGCGGTGTCTTGCCCTTTG
GATCCATCTTCATTGAGATGTACTTCATCTTCACCTCCTTCTGGGCGTAC
AAGATCTACTACGTCTACGGCTTCATGTTGCTGGTTTTCAGCATCCTGAC
TGTGGTCACCGTGTGCGTCACCATCGTGTGCACCTACTTCCTGCTAAATG
CCGAAGATTACCGATGGCAGTGGACGAGTTTCATGGCTGCGGGCTCCACG
TCGATTTACGTGTACGCCTATTCCTTCTATTACTTCTTCTTTAAAACCAA
AATGTTCGGTCTGTTCCAAACGGCCTTCTACTTTGGCTACATGGCACTCT
TCAGCGGCGCCTTGGGCATTATCTGCGGCACCGTCGGCTATGTGGGCACG
AATCTCTTCGTGCGCAAAATCTATTCCAATGTGAAAATAGACTAAAAGCT
TTCTAGACCAT
BS13052.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10590-RA | 1779 | CG10590-PA | 1..1779 | 17..1795 | 8895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10590-RA | 2653 | CG10590-RA | 182..1964 | 17..1799 | 8900 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5601990..5602955 | 1650..685 | 4830 | 100 | Minus |
| 3L | 28110227 | 3L | 5603072..5603631 | 685..126 | 2800 | 100 | Minus |
| 3L | 28110227 | 3L | 5601785..5601933 | 1799..1651 | 730 | 99.3 | Minus |
| 3L | 28110227 | 3L | 5603688..5603798 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:37:58 has no hits.
BS13052.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:50 Download gff for
BS13052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 178..1954 | 17..1793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:16 Download gff for
BS13052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 182..1958 | 17..1793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:11 Download gff for
BS13052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 182..1958 | 17..1793 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:11 Download gff for
BS13052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5601791..5601933 | 1651..1793 | 100 | <- | Minus |
| 3L | 5601990..5602954 | 686..1650 | 100 | <- | Minus |
| 3L | 5603072..5603629 | 128..685 | 100 | <- | Minus |
| 3L | 5603688..5603798 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:16 Download gff for
BS13052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5594891..5595033 | 1651..1793 | 100 | <- | Minus |
| arm_3L | 5595090..5596054 | 686..1650 | 100 | <- | Minus |
| arm_3L | 5596172..5596729 | 128..685 | 100 | <- | Minus |
| arm_3L | 5596788..5596898 | 17..127 | 100 | | Minus |
BS13052.pep Sequence
Translation from 16 to 1794
> BS13052.pep
MGSSATQTTVPFRAICLCLLIASCYVSLSQADEHNHKYNDREEVVLWMNT
VGPYHNRQETYAYFSLPFCSGQKSSISHYHETLSEALQGVELEFSGYEME
FKSDAPKSVICMVTLQEESAKAFTYAVKNEYWYQMYIDGLPIWGKVGERD
ERDGKYYIFTHKKFDIGYNGQQIVDITLTTEGREELKPGSHINFSYEVNW
KPSKVEFKNRFDKYLDPNFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRT
LRKDYARYSKDEEIDDMERDLGDEYGWKQVHGDVFRSPPNTLLFSALVGA
GYQLISVVFCVIMFAIVGELYTERGSMLSTAIFVYAATSPINGYFGGSLY
ARLGGRMWIRQMLVSAFTVPVAVCGTAFLINFIAIGYHASRAIPFGTMVA
VTCICLFVILPLTLVGTVVGRNLDGQPDFPCRVNAVPRPIPEKKWYMEPL
IIVLLGGVLPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFSILTVVTVC
VTIVCTYFLLNAEDYRWQWTSFMAAGSTSIYVYAYSFYYFFFKTKMFGLF
QTAFYFGYMALFSGALGIICGTVGYVGTNLFVRKIYSNVKID*
BS13052.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10590-PA | 592 | CG10590-PA | 1..592 | 1..592 | 3156 | 100 | Plus |
| TM9SF4-PB | 630 | CG7364-PB | 55..630 | 58..592 | 925 | 35.1 | Plus |
| TM9SF4-PA | 630 | CG7364-PA | 55..630 | 58..592 | 925 | 35.1 | Plus |
| CG9318-PB | 659 | CG9318-PB | 46..659 | 41..592 | 767 | 29.6 | Plus |
| CG9318-PA | 659 | CG9318-PA | 46..659 | 41..592 | 767 | 29.6 | Plus |
