Clone BS13055 Report

Search the DGRC for BS13055

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptMipp1-RA
Protein status:BS13055.pep: full length peptide match
Sequenced Size:1436

Clone Sequence Records

BS13055.complete Sequence

1436 bp assembled on 2009-12-07

GenBank Submission: KX803042

> BS13055.complete
GAAGTTATCAGTCGACATGCGCCTGCTGATATTGCTACTGCTGCCACTGG
TGGCCATCGCCCAAGATGACTACTGCTTCAGCAAGGACACCTCCCGCCTC
CAGACCCGCCAGTTCTCCTCGAAGACCGCCTATCAGATCGTCAAGGGCAC
GGACATTGACAAGCAGTACCTGGTGCCCGGCTGTCAGCCCCAGAAGATGT
GGATCTTTCACAGGCACGGCACACGACTGCCCAAGAAGAGCATGATCAAC
AAGGCGTCCAGGGTGGCTGAGCTGCGCGATCTCATCATTAACAACTACCA
AGTGGCCAGGACCAAGCCCGAAACGGATGCTCTCTGCCAGACGGATCTGA
TTGCCATCAAGTTGTGGAAGTGGAACAGCAGCATAACGCCCGACATGGAG
GAGTATCTGACCGCCCAGGGCTACGAGGATCTCAGGGGCACGGCCAAGCT
GTACCAGCGGTACTATCCCACTGTGCTGACCGCTAACTATAATGACACTT
ACTACCAGTTCCGCCATACGGACACCCAGCGCACCACGGAAAGTTTCAAG
GCTTTCGCCGAGGGTCTGTTTGGATCCCAAAACGCTGCTCATCCCGTCGA
GATTCCCAAGCAGGATCTGCTGCTGCGTCCCTATGACTATTGCTCCTCTT
TCAAGAATGTGAACTACAAGGATGAGGGCTCTGAGTACTACAAGTTTCAT
CAGTCGAAGCTGTACAACGACACGTTGGCGGATATCTCCACTCGATTGGG
TTTCCTTTACACCCTGGAGGAGGCGGACATCAAGCTAATGTACGATATGT
GTCGCTATGAGCAGGCGTGGAATGTGGACCGCAATAGCGTCTGGTGCGGC
GCCTTCTTGCCGGAGCAAATAACGGTCTTTGAGTACCTGGAAGATCTAAA
GTACTACTATGGCTCGGGCTATGGTTTCCCGGAAAACGCACATCTCAACT
GCCGACTGGTGCAGGACCTGCTCACCCACCTGAGCAATCCGGTGTCGCCG
CATGTGGTAGCTCATTTCGGTCACTCGACTGGTCTCCTAACTCTCCTAAC
TGCGCTGGGAATCCAGAAGGACGACATCAAGTTGCGGGCAGACAATTACG
ATAGTTTGACGAGCCGCCGTTGGAAGAGCAGCCTGATCGATCCGTTTGCC
GCCAATTTCGTGGCGGTGAAATACGACTGTCCGGCGGACTTGGATCGCGA
GAAGGTGGTCTTCTTCCTCAACCAGCAGGCCGTGCAGCTGGACTGGTGCA
GCGTCGGTCTGTGCAAGTGGTCAGATGTCCTCGAGAAGTACAAGACCATT
GCGGATGCGGATTGTGGAGAATACTACTGCCGGACGGGAGGTGCTCCATC
GCTGGGATCCGGAGTTGGCGGACTTCTGGCCACCACGCTCGCCGCCATGC
TGGTCTACTTAATGCACTAAAAGCTTTCTAGACCAT

BS13055.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
Mipp1-RC 1404 CG4123-PC 1..1404 17..1420 7020 100 Plus
Mipp1-RA 1404 CG4123-PA 1..1404 17..1420 7020 100 Plus
Mipp1-RB 1404 CG4123-PB 1..1404 17..1420 7020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
Mipp1-RC 2009 CG4123-RC 133..1536 17..1420 7020 100 Plus
Mipp1-RA 1828 CG4123-RA 133..1536 17..1420 7020 100 Plus
Mipp1-RB 1769 CG4123-RB 74..1477 17..1420 7020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16563921..16564517 1420..824 2985 100 Minus
3L 28110227 3L 16565609..16565863 271..17 1275 100 Minus
3L 28110227 3L 16564719..16564962 750..507 1220 100 Minus
3L 28110227 3L 16565033..16565271 508..270 1195 100 Minus
3L 28110227 3L 16564573..16564649 826..750 385 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:10:59 has no hits.

BS13055.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:34 Download gff for BS13055.complete
Subject Subject Range Query Range Percent Splice Strand
Mipp1-RA 129..1530 17..1418 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:58 Download gff for BS13055.complete
Subject Subject Range Query Range Percent Splice Strand
Mipp1-RB 74..1475 17..1418 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:36 Download gff for BS13055.complete
Subject Subject Range Query Range Percent Splice Strand
Mipp1-RA 129..1530 17..1418 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:39 Download gff for BS13055.complete
Subject Subject Range Query Range Percent Splice Strand
Mipp1-RB 74..1475 17..1418 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:39 Download gff for BS13055.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16563923..16564517 824..1418 100 <- Minus
3L 16564576..16564648 751..823 100 <- Minus
3L 16564719..16564960 509..750 100 <- Minus
3L 16565033..16565269 272..508 100 <- Minus
3L 16565609..16565863 17..271 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:58 Download gff for BS13055.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16557819..16558060 509..750 100 <- Minus
arm_3L 16558133..16558369 272..508 100 <- Minus
arm_3L 16558709..16558963 17..271 100   Minus
arm_3L 16557023..16557617 824..1418 100 <- Minus
arm_3L 16557676..16557748 751..823 100 <- Minus

BS13055.3prime Sequence

694 bp (658 high quality bases) assembled on 2006-10-13

> BS13055.3prime
ATGGTCTAGAAAGCTTTTAGTGCATTAAGTAGACCAGCATGGCGGCGAGC
GTGGTGGCCAGAAGTCCGCCAACTCCGGATCCCAGCGATGGAGCACCTCC
CGTCCGGCAGTAGTATTCTCCACAATCCGCATCCGCAATGGTCTTGTACT
TCTCGAGGACATCTGACCACTTGCACAGACCGACGCTGCACCAGTCCAGC
TGCACGGCCTGCTGGTTGAGGAAGAAGACCACCTTCTCGCGATCCAAGTC
CGCCGGACAGTCGTATTTCACCGCCACGAAATTGGCGGCAAACGGATCGA
TCAGGCTGCTCTTCCAACGGCGGCTCGTCAAACTATCGTAATTGTCTGCC
CGCAACTTGATGTCGTCCTTCTGGATTCCCAGCGCAGTTAGGAGAGTTAG
GAGACCAGTCGAGTGACCGAAATGAGCTACCACATGCGGCGACACCGGAT
TGCTCAGGTGGGTGAGCAGGTCCTGCACCAGTCGGCAGTTGAGATGTGCG
TTTTCCGGGAAACCATAGCCCGAGCCATAGTAGTACTTTAGATCTTCCAG
GTACTCAAAGACCGTTATTTGCTCCGGCAAGAAGGCGCCGCACCAGACGC
TATTGCGGTCCACATTCCACGCCTGCTCATAGCGACACATATCGTACATT
AGCTTGATGTCCGCCTCCTCCAGGGTGTAAAGGAAACCCCATCG

BS13055.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4123-PB 1404 Mipp1-RB 732..1404 689..17 3365 100 Minus
CG4123-PA 1404 Mipp1-RA 732..1404 689..17 3365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
Mipp1-RC 2009 CG4123-RC 859..1536 694..17 3375 99.9 Minus
Mipp1-RA 1828 CG4123-RA 859..1536 694..17 3375 99.9 Minus
Mipp1-RB 1769 CG4123-RB 800..1477 694..17 3375 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16563921..16564517 17..613 2985 100 Plus
3L 28110227 3L 16564573..16564649 611..687 385 100 Plus
Blast to na_te.dros performed on 2015-02-05 02:07:58 has no hits.

BS13055.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:40 Download gff for BS13055.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4123-PA 727..1404 17..694 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:08:08 Download gff for BS13055.3prime
Subject Subject Range Query Range Percent Splice Strand
Mipp1-RB 800..1482 9..694 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:02:39 Download gff for BS13055.3prime
Subject Subject Range Query Range Percent Splice Strand
Mipp1-RB 800..1482 9..694 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:02:39 Download gff for BS13055.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16563916..16564517 9..613 99 <- Plus
3L 16564576..16564649 614..687 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:08:08 Download gff for BS13055.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16557676..16557749 614..687 100   Plus
arm_3L 16557016..16557617 9..613 99 <- Plus

BS13055.5prime Sequence

655 bp (652 high quality bases) assembled on 2006-10-13

> BS13055.5prime
GAAGTTATCAGTCGACATGCGCCTGCTGATATTGCTACTGCTGCCACTGG
TGGCCATCGCCCAAGATGACTACTGCTTCAGCAAGGACACCTCCCGCCTC
CAGACCCGCCAGTTCTCCTCGAAGACCGCCTATCAGATCGTCAAGGGCAC
GGACATTGACAAGCAGTACCTGGTGCCCGGCTGTCAGCCCCAGAAGATGT
GGATCTTTCACAGGCACGGCACACGACTGCCCAAGAAGAGCATGATCAAC
AAGGCGTCCAGGGTGGCTGAGCTGCGCGATCTCATCATTAACAACTACCA
AGTGGCCAGGACCAAGCCCGAAACGGATGCTCTCTGCCAGACGGATCTGA
TTGCCATCAAGTTGTGGAAGTGGAACAGCAGCATAACGCCCGACATGGAG
GAGTATCTGACCGCCCAGGGCTACGAGGATCTCAGGGGCACGGCCAAGCT
GTACCAGCGGTACTATCCCACTGTGCTGACCGCTAACTATAATGACACTT
ACTACCAGTTCCGCCATACGGACACCCAGCGCACCACGGAAAGTTTCAAG
GCTTTCGCCGAGGGTCTGTTTGGATCCCAAAACGCTGCTCATCCCGTCGA
GATTCCCAAGCAGGATCTGCTGCTGCGTCCCTATGACTATTGCTCCTCTT
TCAAG

BS13055.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4123-PB 1404 Mipp1-RB 1..639 17..655 3195 100 Plus
CG4123-PA 1404 Mipp1-RA 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Mipp1-RC 2009 CG4123-RC 133..771 17..655 3195 100 Plus
Mipp1-RA 1828 CG4123-RA 133..771 17..655 3195 100 Plus
Mipp1-RB 1769 CG4123-RB 74..712 17..655 3195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16565609..16565863 271..17 1275 100 Minus
3L 28110227 3L 16565033..16565271 508..270 1195 100 Minus
3L 28110227 3L 16564814..16564962 655..507 745 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:48:13 has no hits.

BS13055.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:40 Download gff for BS13055.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4123-PA 1..639 17..655 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:00 Download gff for BS13055.5prime
Subject Subject Range Query Range Percent Splice Strand
Mipp1-RB 65..712 7..655 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:37 Download gff for BS13055.5prime
Subject Subject Range Query Range Percent Splice Strand
Mipp1-RB 65..712 7..655 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:37 Download gff for BS13055.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16565033..16565269 272..508 100 <- Minus
3L 16565609..16565870 9..271 98   Minus
3L 16564814..16564960 509..655 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:00 Download gff for BS13055.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16557914..16558060 509..655 100 <- Minus
arm_3L 16558133..16558369 272..508 100 <- Minus
arm_3L 16558709..16558970 9..271 98   Minus

BS13055.pep Sequence

Translation from 16 to 1419

> BS13055.pep
MRLLILLLLPLVAIAQDDYCFSKDTSRLQTRQFSSKTAYQIVKGTDIDKQ
YLVPGCQPQKMWIFHRHGTRLPKKSMINKASRVAELRDLIINNYQVARTK
PETDALCQTDLIAIKLWKWNSSITPDMEEYLTAQGYEDLRGTAKLYQRYY
PTVLTANYNDTYYQFRHTDTQRTTESFKAFAEGLFGSQNAAHPVEIPKQD
LLLRPYDYCSSFKNVNYKDEGSEYYKFHQSKLYNDTLADISTRLGFLYTL
EEADIKLMYDMCRYEQAWNVDRNSVWCGAFLPEQITVFEYLEDLKYYYGS
GYGFPENAHLNCRLVQDLLTHLSNPVSPHVVAHFGHSTGLLTLLTALGIQ
KDDIKLRADNYDSLTSRRWKSSLIDPFAANFVAVKYDCPADLDREKVVFF
LNQQAVQLDWCSVGLCKWSDVLEKYKTIADADCGEYYCRTGGAPSLGSGV
GGLLATTLAAMLVYLMH*

BS13055.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
Mipp1-PC 467 CG4123-PC 1..467 1..467 2495 100 Plus
Mipp1-PA 467 CG4123-PA 1..467 1..467 2495 100 Plus
Mipp1-PB 467 CG4123-PB 1..467 1..467 2495 100 Plus
Mipp2-PA 453 CG4317-PA 10..452 3..439 473 29.7 Plus