Clone Sequence Records
BS13055.complete Sequence
1436 bp assembled on 2009-12-07
GenBank Submission: KX803042
> BS13055.complete
GAAGTTATCAGTCGACATGCGCCTGCTGATATTGCTACTGCTGCCACTGG
TGGCCATCGCCCAAGATGACTACTGCTTCAGCAAGGACACCTCCCGCCTC
CAGACCCGCCAGTTCTCCTCGAAGACCGCCTATCAGATCGTCAAGGGCAC
GGACATTGACAAGCAGTACCTGGTGCCCGGCTGTCAGCCCCAGAAGATGT
GGATCTTTCACAGGCACGGCACACGACTGCCCAAGAAGAGCATGATCAAC
AAGGCGTCCAGGGTGGCTGAGCTGCGCGATCTCATCATTAACAACTACCA
AGTGGCCAGGACCAAGCCCGAAACGGATGCTCTCTGCCAGACGGATCTGA
TTGCCATCAAGTTGTGGAAGTGGAACAGCAGCATAACGCCCGACATGGAG
GAGTATCTGACCGCCCAGGGCTACGAGGATCTCAGGGGCACGGCCAAGCT
GTACCAGCGGTACTATCCCACTGTGCTGACCGCTAACTATAATGACACTT
ACTACCAGTTCCGCCATACGGACACCCAGCGCACCACGGAAAGTTTCAAG
GCTTTCGCCGAGGGTCTGTTTGGATCCCAAAACGCTGCTCATCCCGTCGA
GATTCCCAAGCAGGATCTGCTGCTGCGTCCCTATGACTATTGCTCCTCTT
TCAAGAATGTGAACTACAAGGATGAGGGCTCTGAGTACTACAAGTTTCAT
CAGTCGAAGCTGTACAACGACACGTTGGCGGATATCTCCACTCGATTGGG
TTTCCTTTACACCCTGGAGGAGGCGGACATCAAGCTAATGTACGATATGT
GTCGCTATGAGCAGGCGTGGAATGTGGACCGCAATAGCGTCTGGTGCGGC
GCCTTCTTGCCGGAGCAAATAACGGTCTTTGAGTACCTGGAAGATCTAAA
GTACTACTATGGCTCGGGCTATGGTTTCCCGGAAAACGCACATCTCAACT
GCCGACTGGTGCAGGACCTGCTCACCCACCTGAGCAATCCGGTGTCGCCG
CATGTGGTAGCTCATTTCGGTCACTCGACTGGTCTCCTAACTCTCCTAAC
TGCGCTGGGAATCCAGAAGGACGACATCAAGTTGCGGGCAGACAATTACG
ATAGTTTGACGAGCCGCCGTTGGAAGAGCAGCCTGATCGATCCGTTTGCC
GCCAATTTCGTGGCGGTGAAATACGACTGTCCGGCGGACTTGGATCGCGA
GAAGGTGGTCTTCTTCCTCAACCAGCAGGCCGTGCAGCTGGACTGGTGCA
GCGTCGGTCTGTGCAAGTGGTCAGATGTCCTCGAGAAGTACAAGACCATT
GCGGATGCGGATTGTGGAGAATACTACTGCCGGACGGGAGGTGCTCCATC
GCTGGGATCCGGAGTTGGCGGACTTCTGGCCACCACGCTCGCCGCCATGC
TGGTCTACTTAATGCACTAAAAGCTTTCTAGACCAT
BS13055.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:11:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mipp1-RC | 1404 | CG4123-PC | 1..1404 | 17..1420 | 7020 | 100 | Plus |
Mipp1-RA | 1404 | CG4123-PA | 1..1404 | 17..1420 | 7020 | 100 | Plus |
Mipp1-RB | 1404 | CG4123-PB | 1..1404 | 17..1420 | 7020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mipp1-RC | 2009 | CG4123-RC | 133..1536 | 17..1420 | 7020 | 100 | Plus |
Mipp1-RA | 1828 | CG4123-RA | 133..1536 | 17..1420 | 7020 | 100 | Plus |
Mipp1-RB | 1769 | CG4123-RB | 74..1477 | 17..1420 | 7020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16563921..16564517 | 1420..824 | 2985 | 100 | Minus |
3L | 28110227 | 3L | 16565609..16565863 | 271..17 | 1275 | 100 | Minus |
3L | 28110227 | 3L | 16564719..16564962 | 750..507 | 1220 | 100 | Minus |
3L | 28110227 | 3L | 16565033..16565271 | 508..270 | 1195 | 100 | Minus |
3L | 28110227 | 3L | 16564573..16564649 | 826..750 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:10:59 has no hits.
BS13055.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:34 Download gff for
BS13055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mipp1-RA | 129..1530 | 17..1418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:58 Download gff for
BS13055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mipp1-RB | 74..1475 | 17..1418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:36 Download gff for
BS13055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mipp1-RA | 129..1530 | 17..1418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:39 Download gff for
BS13055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mipp1-RB | 74..1475 | 17..1418 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:39 Download gff for
BS13055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16563923..16564517 | 824..1418 | 100 | <- | Minus |
3L | 16564576..16564648 | 751..823 | 100 | <- | Minus |
3L | 16564719..16564960 | 509..750 | 100 | <- | Minus |
3L | 16565033..16565269 | 272..508 | 100 | <- | Minus |
3L | 16565609..16565863 | 17..271 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:58 Download gff for
BS13055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16557819..16558060 | 509..750 | 100 | <- | Minus |
arm_3L | 16558133..16558369 | 272..508 | 100 | <- | Minus |
arm_3L | 16558709..16558963 | 17..271 | 100 | | Minus |
arm_3L | 16557023..16557617 | 824..1418 | 100 | <- | Minus |
arm_3L | 16557676..16557748 | 751..823 | 100 | <- | Minus |
BS13055.3prime Sequence
694 bp (658 high quality bases) assembled on 2006-10-13
> BS13055.3prime
ATGGTCTAGAAAGCTTTTAGTGCATTAAGTAGACCAGCATGGCGGCGAGC
GTGGTGGCCAGAAGTCCGCCAACTCCGGATCCCAGCGATGGAGCACCTCC
CGTCCGGCAGTAGTATTCTCCACAATCCGCATCCGCAATGGTCTTGTACT
TCTCGAGGACATCTGACCACTTGCACAGACCGACGCTGCACCAGTCCAGC
TGCACGGCCTGCTGGTTGAGGAAGAAGACCACCTTCTCGCGATCCAAGTC
CGCCGGACAGTCGTATTTCACCGCCACGAAATTGGCGGCAAACGGATCGA
TCAGGCTGCTCTTCCAACGGCGGCTCGTCAAACTATCGTAATTGTCTGCC
CGCAACTTGATGTCGTCCTTCTGGATTCCCAGCGCAGTTAGGAGAGTTAG
GAGACCAGTCGAGTGACCGAAATGAGCTACCACATGCGGCGACACCGGAT
TGCTCAGGTGGGTGAGCAGGTCCTGCACCAGTCGGCAGTTGAGATGTGCG
TTTTCCGGGAAACCATAGCCCGAGCCATAGTAGTACTTTAGATCTTCCAG
GTACTCAAAGACCGTTATTTGCTCCGGCAAGAAGGCGCCGCACCAGACGC
TATTGCGGTCCACATTCCACGCCTGCTCATAGCGACACATATCGTACATT
AGCTTGATGTCCGCCTCCTCCAGGGTGTAAAGGAAACCCCATCG
BS13055.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:20:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4123-PB | 1404 | Mipp1-RB | 732..1404 | 689..17 | 3365 | 100 | Minus |
CG4123-PA | 1404 | Mipp1-RA | 732..1404 | 689..17 | 3365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mipp1-RC | 2009 | CG4123-RC | 859..1536 | 694..17 | 3375 | 99.9 | Minus |
Mipp1-RA | 1828 | CG4123-RA | 859..1536 | 694..17 | 3375 | 99.9 | Minus |
Mipp1-RB | 1769 | CG4123-RB | 800..1477 | 694..17 | 3375 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16563921..16564517 | 17..613 | 2985 | 100 | Plus |
3L | 28110227 | 3L | 16564573..16564649 | 611..687 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 02:07:58 has no hits.
BS13055.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:40 Download gff for
BS13055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4123-PA | 727..1404 | 17..694 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:08:08 Download gff for
BS13055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mipp1-RB | 800..1482 | 9..694 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:02:39 Download gff for
BS13055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mipp1-RB | 800..1482 | 9..694 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:02:39 Download gff for
BS13055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16563916..16564517 | 9..613 | 99 | <- | Plus |
3L | 16564576..16564649 | 614..687 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:08:08 Download gff for
BS13055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16557676..16557749 | 614..687 | 100 | | Plus |
arm_3L | 16557016..16557617 | 9..613 | 99 | <- | Plus |
BS13055.5prime Sequence
655 bp (652 high quality bases) assembled on 2006-10-13
> BS13055.5prime
GAAGTTATCAGTCGACATGCGCCTGCTGATATTGCTACTGCTGCCACTGG
TGGCCATCGCCCAAGATGACTACTGCTTCAGCAAGGACACCTCCCGCCTC
CAGACCCGCCAGTTCTCCTCGAAGACCGCCTATCAGATCGTCAAGGGCAC
GGACATTGACAAGCAGTACCTGGTGCCCGGCTGTCAGCCCCAGAAGATGT
GGATCTTTCACAGGCACGGCACACGACTGCCCAAGAAGAGCATGATCAAC
AAGGCGTCCAGGGTGGCTGAGCTGCGCGATCTCATCATTAACAACTACCA
AGTGGCCAGGACCAAGCCCGAAACGGATGCTCTCTGCCAGACGGATCTGA
TTGCCATCAAGTTGTGGAAGTGGAACAGCAGCATAACGCCCGACATGGAG
GAGTATCTGACCGCCCAGGGCTACGAGGATCTCAGGGGCACGGCCAAGCT
GTACCAGCGGTACTATCCCACTGTGCTGACCGCTAACTATAATGACACTT
ACTACCAGTTCCGCCATACGGACACCCAGCGCACCACGGAAAGTTTCAAG
GCTTTCGCCGAGGGTCTGTTTGGATCCCAAAACGCTGCTCATCCCGTCGA
GATTCCCAAGCAGGATCTGCTGCTGCGTCCCTATGACTATTGCTCCTCTT
TCAAG
BS13055.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4123-PB | 1404 | Mipp1-RB | 1..639 | 17..655 | 3195 | 100 | Plus |
CG4123-PA | 1404 | Mipp1-RA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mipp1-RC | 2009 | CG4123-RC | 133..771 | 17..655 | 3195 | 100 | Plus |
Mipp1-RA | 1828 | CG4123-RA | 133..771 | 17..655 | 3195 | 100 | Plus |
Mipp1-RB | 1769 | CG4123-RB | 74..712 | 17..655 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16565609..16565863 | 271..17 | 1275 | 100 | Minus |
3L | 28110227 | 3L | 16565033..16565271 | 508..270 | 1195 | 100 | Minus |
3L | 28110227 | 3L | 16564814..16564962 | 655..507 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:48:13 has no hits.
BS13055.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:40 Download gff for
BS13055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4123-PA | 1..639 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:15:00 Download gff for
BS13055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mipp1-RB | 65..712 | 7..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:37 Download gff for
BS13055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mipp1-RB | 65..712 | 7..655 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:37 Download gff for
BS13055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16565033..16565269 | 272..508 | 100 | <- | Minus |
3L | 16565609..16565870 | 9..271 | 98 | | Minus |
3L | 16564814..16564960 | 509..655 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:15:00 Download gff for
BS13055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16557914..16558060 | 509..655 | 100 | <- | Minus |
arm_3L | 16558133..16558369 | 272..508 | 100 | <- | Minus |
arm_3L | 16558709..16558970 | 9..271 | 98 | | Minus |
BS13055.pep Sequence
Translation from 16 to 1419
> BS13055.pep
MRLLILLLLPLVAIAQDDYCFSKDTSRLQTRQFSSKTAYQIVKGTDIDKQ
YLVPGCQPQKMWIFHRHGTRLPKKSMINKASRVAELRDLIINNYQVARTK
PETDALCQTDLIAIKLWKWNSSITPDMEEYLTAQGYEDLRGTAKLYQRYY
PTVLTANYNDTYYQFRHTDTQRTTESFKAFAEGLFGSQNAAHPVEIPKQD
LLLRPYDYCSSFKNVNYKDEGSEYYKFHQSKLYNDTLADISTRLGFLYTL
EEADIKLMYDMCRYEQAWNVDRNSVWCGAFLPEQITVFEYLEDLKYYYGS
GYGFPENAHLNCRLVQDLLTHLSNPVSPHVVAHFGHSTGLLTLLTALGIQ
KDDIKLRADNYDSLTSRRWKSSLIDPFAANFVAVKYDCPADLDREKVVFF
LNQQAVQLDWCSVGLCKWSDVLEKYKTIADADCGEYYCRTGGAPSLGSGV
GGLLATTLAAMLVYLMH*
BS13055.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:09:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mipp1-PC | 467 | CG4123-PC | 1..467 | 1..467 | 2495 | 100 | Plus |
Mipp1-PA | 467 | CG4123-PA | 1..467 | 1..467 | 2495 | 100 | Plus |
Mipp1-PB | 467 | CG4123-PB | 1..467 | 1..467 | 2495 | 100 | Plus |
Mipp2-PA | 453 | CG4317-PA | 10..452 | 3..439 | 473 | 29.7 | Plus |