Clone Sequence Records
BS13056.complete Sequence
2477 bp assembled on 2009-12-07
GenBank Submission: KX805072
> BS13056.complete
GAAGTTATCAGTCGACATGCCTTCGGAACAGCATACGAATATAAAAGTGG
CGGTTCGCGTACGGCCGTATAATGTCCGTGAATTGGAGCAAAAACAGCGG
AGTATTATCAAGGTCATGGATCGTTCGGCACTGCTGTTCGATCCCGACGA
GGAGGACGATGAGTTCTTCTTTCAGGGCGCCAAGCAACCGTACCGCGACA
TCACCAAGCGGATGAACAAAAAGTTGACCATGGAATTCGACAGGGTATTC
GATATAGACAATTCCAACCAGGATCTGTTCGAGGAGTGCACGGCGCCGCT
GGTCGACGCGGTGTTAAATGGATACAACTGCTCGGTATTTGTATATGGAG
CCACTGGCGCCGGAAAAACATTCACAATGCTGGGCAGCGAGGCTCATCCG
GGTCTGACCTATCTTACCATGCAAGATCTCTTCGATAAGATCCAAGCGCA
GAGCGACGTGCGCAAGTTCGATGTGGGGGTATCCTATCTAGAGGTGTACA
ACGAACATGTGATGAATCTGCTAACTAAATCGGGCCCTTTAAAACTTCGC
GAGGACAACAATGGCGTGGTGGTCAGTGGTCTTTGTCTCACGCCCATCTA
CAGTGCCGAGGAGCTGCTAAGAATGCTGATGCTGGGCAACTCTCATCGCA
CTCAGCACCCCACAGATGCCAATGCAGAGAGTTCCAGGTCACATGCCATC
TTCCAGGTGCACATTAGGATCACGGAGCGCAAGACCGACACCAAAAGAAC
GGTCAAACTATCCATGATCGATCTGGCGGGCAGTGAGAGGGCGGCCAGTA
CGAAAGGCATTGGAGTGCGATTCAAGGAAGGCGCCAGCATCAACAAAAGT
CTCTTAGCTTTGGGAAATTGCATAAACAAGCTAGCCGACGGCTTAAAGCA
CATCCCGTACCGCGACTCGAACCTGACACGCATCCTGAAGGACTCGTTGG
GCGGAAATTGTCGCACATTGATGGTGGCCAATGTCTCGATGAGCTCACTG
ACCTATGAAGATACCTACAACACCCTTAAGTACGCTAGCCGAGCTAAGAA
GATACGCACGACTCTGAAACAGAATGTCCTCAAGTCCAAGATGCCAACCG
AGTTCTATGTGAAGAAGATCGACGAGGTGGTAGCCGAGAACGAGCGACTC
AAAGAGCGCAACAAGGCGCTGGAGGCCAAGGCCACTCAGTTGGAGCGCGC
CGGCAATAGTGGATTCGATCCGCTGGAGCTTAAGACGTGGTACAGCAAGA
TAGACGCTGTATATGCGGCCGCCCGGCAGCTTCAGGAGCACGTCCTTGGT
ATGCGTAGCAAGATCAAGAACATCAACTACCGGCAGACACTGAAAAAAGA
ACTGGAGGAGTTCAGGAAGCTGATGTGTGTCGACCAGCGAGTGTGCCAGG
AGGACTTCCGTCGCTTTGCGAACTACATGAGCACACTGACCAGCCAGATG
GAGAAGTACAAGGAGGAGTTGCCCAGCTGGCTGAGTAAAATGGAGATTGC
CTACCAGGATCTAGAAAGTCTAAAGCGAGAGGTTAACAAATCAAAGGCCT
ACCAGATACTCATTGTATACGTTAAGTACAAGGATCTCGAGCTGCAGCTG
ACCAAGCAGAATATCTTTAACAATCACGTGAACGCAATTAACCAGGAGCT
GGTTGAGAACTTGGATCTGATGCGAAAGTCCTTCCGAACAGCCTGCGAAG
TGCTCAACCAGACGTACGATCGCCTCGAGGATGGTCAAAAGCTGACGCCG
GAAATTGAGGCGGTCTTCGAAAGGTTGCTGCGAAAGATGCGGTTCGCCGA
TTCCGAGGCCAATACCAAAATGGCCGAGATGAATCCGTTGGCGGTGCCTG
TGGCTCTGCGCAGCAGCGCCCAGGAGGAAGAAGAGCCCACATGCAGCCTC
ACGGCCAGCGCCAAAAAGCGACAAAGGCAAGCGGCTCAGAGCGACGACGA
TCTGCATTTGAGCATGGAGGACTTTGATAGCCAGGACACCGAATCAGATT
CCGAGGAGCTGCACAGGACGTTTAAGAGGCCACGAAATCTAAACGAAACG
CAGGTCCTGGGTCCCTGCAGCAGTAGTTCTAGCAGCAGTACTTCTAGCAG
CAGTAGCGCAAGGAAGGCACTCACGGCGACGGTGACCAAGCCGCGAACCG
TCCAACAGCGACTGGTCAGCGATCTGATATCCGATCAGAATGTGCGCGGT
GGCAATGAAAAGATCAAGAAGGCTCTACTCAAGTCGAATCACTTTACGGC
GCAAGGACTTCAGAGAACGTTGGCGGCTGCTTCTCTGGCCAAGGAAAACG
TAAAATACAACGCCAACTATGTGCGCAAGAGTCCACGAGCGCTAATGGCC
AAAGCCCTTGCAGGCACCTCGACGCTTGCGAGAAAACCGCTGGGATCGGC
CAGTAAGGAGCCGCCTTTGGTCAAATTCAATCGTGCTGCTTCGTTCCGCC
TGAAGAAGTAGAAGCTTTCTAGACCAT
BS13056.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:57:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klp67A-RC | 2445 | CG10923-PC | 1..2445 | 17..2461 | 12225 | 100 | Plus |
| Klp67A-RA | 2445 | CG10923-PA | 1..2445 | 17..2461 | 12225 | 100 | Plus |
| Klp67A-RB | 2223 | CG10923-PB | 1..2207 | 17..2223 | 11035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:57:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klp67A-RC | 2994 | CG10923-RC | 258..2704 | 17..2463 | 12235 | 100 | Plus |
| Klp67A-RA | 2899 | CG10923-RA | 163..2609 | 17..2463 | 12235 | 100 | Plus |
| Klp67A-RB | 2991 | CG10923-RB | 163..2369 | 17..2223 | 11035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:57:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9365336..9366418 | 1403..321 | 5415 | 100 | Minus |
| 3L | 28110227 | 3L | 9363373..9364194 | 2222..1401 | 4110 | 100 | Minus |
| 3L | 28110227 | 3L | 9366485..9366789 | 321..17 | 1525 | 100 | Minus |
| 3L | 28110227 | 3L | 9363095..9363227 | 2354..2222 | 665 | 100 | Minus |
| 3L | 28110227 | 3L | 9362926..9363036 | 2463..2353 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:57:30 has no hits.
BS13056.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:34 Download gff for
BS13056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp67A-RA | 152..2596 | 17..2461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:11 Download gff for
BS13056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp67A-RA | 163..2607 | 17..2461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:27 Download gff for
BS13056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp67A-RA | 152..2596 | 17..2461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:37 Download gff for
BS13056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp67A-RA | 163..2607 | 17..2461 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:37 Download gff for
BS13056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9362928..9363034 | 2355..2461 | 100 | <- | Minus |
| 3L | 9363095..9363226 | 2223..2354 | 100 | <- | Minus |
| 3L | 9363373..9364192 | 1403..2222 | 100 | <- | Minus |
| 3L | 9365337..9366417 | 322..1402 | 100 | <- | Minus |
| 3L | 9366485..9366789 | 17..321 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:11 Download gff for
BS13056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9356028..9356134 | 2355..2461 | 100 | <- | Minus |
| arm_3L | 9356195..9356326 | 2223..2354 | 100 | <- | Minus |
| arm_3L | 9356473..9357292 | 1403..2222 | 100 | <- | Minus |
| arm_3L | 9358437..9359517 | 322..1402 | 100 | <- | Minus |
| arm_3L | 9359585..9359889 | 17..321 | 100 | | Minus |
BS13056.3prime Sequence
792 bp (719 high quality bases) assembled on 2006-10-13
> BS13056.3prime
ATGGTCTAGAAAGCTTCTACTTCTTCAGGCGGAACGAAGCAGCACGATTG
AATTTGACCAAAGGCGGCTCCTTACTGGCCGATCCCAGCGGTTTTCTCGC
AAGCGTCGAGGTGCCTGCAAGGGCTTTGGCCATTAGCGCTCGTGGACTCT
TGCGCACATAGTTGGCGTTGTATTTTACGTTTTCCTTGGCCAGAGAAGCA
GCCGCCAACGTTCTCTGAAGTCCTTGCGCCGTAAAGTGATTCGACTTGAG
TAGAGCCTTCTTGATCTTTTCATTGCCACCGCGCACATTCTGATCGGATA
TCAGATCGCTGACCAGTCGCTGTTGGACGGTTCGCGGCTTGGTCACCGTC
GCCGTGAGTGCCTTCCTTGCGCTACTGCTGCTAGAAGTACTGCTGCTAGA
ACTACTGCTGCAGGGACCCAGGACCTGCGTTTCGTTTAGATTTCGTGGCC
TCTTAAACGTCCTGTGCAGCTCCTCGGAATCTGATTCGGTGTCCTGGCTA
TCAAAGTCCTCCATGCTCAAATGCAGATCGTCGTCGCTCTGAGCCGCTTG
CCTTTGTCGCTTTTTGGCGCTGGCCGTGAGGCTGCATGTGGGCTCTTCTT
CCTCCTGGGCGCTGCTGCGCAGAGCCACAGGCACCGCCAACGGATTCATC
TCGGCCATTTTGGTATTGGCCTCGGAATCGGCGAACCGCATCTTTCGCAG
CAACCTTTCGAAGACCGCCTCAATTTCCGGCGTCAGCTTTTGACCATCCT
CGAGGCGATCGTACGTCTGGGTGAGCACTTCGCAGGCTGTTC
BS13056.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:20:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10923-PA | 2445 | Klp67A-RA | 1670..2445 | 792..17 | 3855 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klp67A-RC | 2994 | CG10923-RC | 1927..2704 | 792..15 | 3875 | 99.9 | Minus |
| Klp67A-RA | 2899 | CG10923-RA | 1832..2609 | 792..15 | 3875 | 99.9 | Minus |
| Klp67A-RB | 2991 | CG10923-RB | 1832..2369 | 792..255 | 2675 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9363373..9363909 | 256..792 | 2670 | 99.8 | Plus |
| 3L | 28110227 | 3L | 9363095..9363227 | 124..256 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 9362926..9363036 | 15..125 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:57:19 has no hits.
BS13056.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:41 Download gff for
BS13056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10923-PA | 1670..2445 | 17..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:00:32 Download gff for
BS13056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp67A-RA | 1832..2609 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:36:54 Download gff for
BS13056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp67A-RA | 1832..2609 | 15..792 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:36:54 Download gff for
BS13056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9362926..9363034 | 15..123 | 100 | <- | Plus |
| 3L | 9363095..9363226 | 124..255 | 100 | <- | Plus |
| 3L | 9363373..9363909 | 256..792 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:00:32 Download gff for
BS13056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9356026..9356134 | 15..123 | 100 | <- | Plus |
| arm_3L | 9356195..9356326 | 124..255 | 100 | <- | Plus |
| arm_3L | 9356473..9357009 | 256..792 | 99 | | Plus |
BS13056.5prime Sequence
781 bp (689 high quality bases) assembled on 2006-10-13
> BS13056.5prime
GAAGTTATCAGTCGACATGCCTTCGGAACAGCATACGAATATAAAAGTGG
CGGTTCGCGTACGGCCGTATAATGTCCGTGAATTGGAGCAAAAACAGCGG
AGTATTATCAAGGTCATGGATCGTTCGGCACTGCTGTTCGATCCCGACGA
GGAGGACGATGAGTTCTTCTTTCAGGGCGCCAAGCAACCGTACCGCGACA
TCACCAAGCGGATGAACAAAAAGTTGACCATGGAATTCGACAGGGTATTC
GATATAGACAATTCCAACCAGGATCTGTTCGAGGAGTGCACGGCGCCGCT
GGTCGACGCGGTGTTAAATGGATACAACTGCTCGGTATTTGTATATGGAG
CCACTGGCGCCGGAAAAACATTCACAATGCTGGGCAGCGAGGCTCATCCG
GGTCTGACCTATCTTACCATGCAAGATCTCTTCGATAAGATCCAAGCGCA
GAGCGACGTGCGCAAGTTCGATGTGGGGGTATCCTATCTAGAGGTGTACA
ACGAACATGTGATGAATCTGCTAACTAAATCGGGCCCTTTAAAACTTCGC
GAGGACAACAATGGCGTGGTGGTCAGTGGTCTTTGTCTCACGCCCATCTA
CAGTGCCGAGGAGCTGCTAAGAATGCTGATGCTGGGCAACTCTCATCGCA
CTCAGCACCCCACAGATGCCAATGCAGAGAGTTCCAGGTCACATGCCATC
TTCCAGGTGCACATTAGGATCACGGAGCGCAAGACCGACACCAAAAGAAC
GGTCAAACTATCCATGATCGATCTGGCGGGC
BS13056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10923-PA | 2445 | Klp67A-RA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:13:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klp67A-RB | 2991 | CG10923-RB | 163..927 | 17..781 | 3825 | 100 | Plus |
| Klp67A-RC | 2994 | CG10923-RC | 258..1022 | 17..781 | 3825 | 100 | Plus |
| Klp67A-RA | 2899 | CG10923-RA | 163..927 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:13:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9365958..9366418 | 781..321 | 2305 | 100 | Minus |
| 3L | 28110227 | 3L | 9366485..9366789 | 321..17 | 1525 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 04:13:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1b | 5171 | Rt1b RT1B 5150bp | 2153..2195 | 265..307 | 107 | 72.1 | Plus |
BS13056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:42 Download gff for
BS13056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10923-PA | 1..765 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:06:55 Download gff for
BS13056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp67A-RA | 152..927 | 5..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:09:16 Download gff for
BS13056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp67A-RA | 152..927 | 5..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:09:16 Download gff for
BS13056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9365958..9366417 | 322..781 | 100 | <- | Minus |
| 3L | 9366485..9366800 | 5..321 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:06:55 Download gff for
BS13056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9359058..9359517 | 322..781 | 100 | <- | Minus |
| arm_3L | 9359585..9359900 | 5..321 | 98 | | Minus |
BS13056.pep Sequence
Translation from 16 to 2460
> BS13056.pep
MPSEQHTNIKVAVRVRPYNVRELEQKQRSIIKVMDRSALLFDPDEEDDEF
FFQGAKQPYRDITKRMNKKLTMEFDRVFDIDNSNQDLFEECTAPLVDAVL
NGYNCSVFVYGATGAGKTFTMLGSEAHPGLTYLTMQDLFDKIQAQSDVRK
FDVGVSYLEVYNEHVMNLLTKSGPLKLREDNNGVVVSGLCLTPIYSAEEL
LRMLMLGNSHRTQHPTDANAESSRSHAIFQVHIRITERKTDTKRTVKLSM
IDLAGSERAASTKGIGVRFKEGASINKSLLALGNCINKLADGLKHIPYRD
SNLTRILKDSLGGNCRTLMVANVSMSSLTYEDTYNTLKYASRAKKIRTTL
KQNVLKSKMPTEFYVKKIDEVVAENERLKERNKALEAKATQLERAGNSGF
DPLELKTWYSKIDAVYAAARQLQEHVLGMRSKIKNINYRQTLKKELEEFR
KLMCVDQRVCQEDFRRFANYMSTLTSQMEKYKEELPSWLSKMEIAYQDLE
SLKREVNKSKAYQILIVYVKYKDLELQLTKQNIFNNHVNAINQELVENLD
LMRKSFRTACEVLNQTYDRLEDGQKLTPEIEAVFERLLRKMRFADSEANT
KMAEMNPLAVPVALRSSAQEEEEPTCSLTASAKKRQRQAAQSDDDLHLSM
EDFDSQDTESDSEELHRTFKRPRNLNETQVLGPCSSSSSSSTSSSSSARK
ALTATVTKPRTVQQRLVSDLISDQNVRGGNEKIKKALLKSNHFTAQGLQR
TLAAASLAKENVKYNANYVRKSPRALMAKALAGTSTLARKPLGSASKEPP
LVKFNRAASFRLKK*
BS13056.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:12:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klp67A-PC | 814 | CG10923-PC | 1..814 | 1..814 | 4109 | 100 | Plus |
| Klp67A-PA | 814 | CG10923-PA | 1..814 | 1..814 | 4109 | 100 | Plus |
| Klp67A-PB | 740 | CG10923-PB | 1..736 | 1..736 | 3728 | 100 | Plus |
| Kif19A-PB | 750 | CG9913-PB | 32..409 | 5..381 | 608 | 38.7 | Plus |
| Klp64D-PA | 677 | CG10642-PA | 20..577 | 8..545 | 592 | 32.3 | Plus |
