Clone BS13058 Report

Search the DGRC for BS13058

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG15345-RA
Protein status:BS13058.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13058.3prime Sequence

414 bp (414 high quality bases) assembled on 2006-10-13

> BS13058.3prime
ATGGTCTAGAAAGCTTTTATTTATATGTATATAAAATAAACATTTTTACA
TTGACGTATTTGTGGTTTGGTTGCACTTTGCTGTCATCCTGCATCTCAAC
GATTCGAGGAGTACCTTCGAGGACATTCTCTTCAATGTCCTCCAGTCTTA
ATGTGCTCAGTTCGCTGTAATCTTCTTCCTCTGAGAGATCTTCGTTGATG
GACTCATTCTTGACGTGGCATTGGAATCGCTCATCCTCGGTGGACTCTTG
CTCTGGCTGATGCACTTCAGTCTCATGGTTTGAATTCTCTCCTTCTCCGG
TGTCGACTTCTGCATCTCTTTCTGTTCCGAAATCGTTGCTACTTTCAAAT
TGATAAACTAGTTTCAAACTCCTCCATCTCGACTTGGAATTGCTGCTCAT
GTCGACTGATAACT

BS13058.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG15345-PA 384 CG15345-RA 1..384 400..17 1920 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG15345-RA 1085 CG15345-RA 401..784 400..17 1920 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8397458..8397841 17..400 1920 100 Plus
Blast to na_te.dros performed 2015-02-08 12:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
Bari1 1728 Bari1 DMBARI1 1728bp AKA(S55767) Derived from X67681 (g7640) (Rel. 36, Last updated, Version 6). 1390..1462 10..82 113 65.3 Plus

BS13058.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:43 Download gff for BS13058.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15345-PA 1..384 17..400 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:40 Download gff for BS13058.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 397..784 17..407 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:17 Download gff for BS13058.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 397..784 17..407 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:17 Download gff for BS13058.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8397458..8397845 17..407 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:40 Download gff for BS13058.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8291491..8291878 17..407 99   Plus

BS13058.5prime Sequence

414 bp (414 high quality bases) assembled on 2006-10-13

> BS13058.5prime
GAAGTTATCAGTCGACATGAGCAGCAATTCCAAGTCGAGATGGAGGAGTT
TGAAACTAGTTTATCAATTTGAAAGTAGCAACGATTTCGGAACAGAAAGA
GATGCAGAAGTCGACACCGGAGAAGGAGAGAATTCAAACCATGAGACTGA
AGTGCATCAGCCAGAGCAAGAGTCCACCGAGGATGAGCGATTCCAATGCC
ACGTCAAGAATGAGTCCATCAACGAAGATCTCTCAGAGGAAGAAGATTAC
AGCGAACTGAGCACATTAAGACTGGAGGACATTGAAGAGAATGTCCTCGA
AGGTACTCCTCGAATCGTTGAGATGCAGGATGACAGCAAAGTGCAACCAA
ACCACAAATACGTCAATGTAAAAATGTTTATTTTATATACATATAAATAA
AAGCTTTCTAGACC

BS13058.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG15345-PA 384 CG15345-RA 1..384 17..400 1920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15345-RA 1085 CG15345-RA 401..784 17..400 1920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8397458..8397841 400..17 1920 100 Minus
Blast to na_te.dros performed 2015-02-11 09:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
Bari1 1728 Bari1 DMBARI1 1728bp AKA(S55767) Derived from X67681 (g7640) (Rel. 36, Last updated, Version 6). 1390..1462 407..335 113 65.3 Minus

BS13058.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:43 Download gff for BS13058.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15345-PA 1..384 17..400 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:40 Download gff for BS13058.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 397..784 10..400 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:31:30 Download gff for BS13058.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 397..784 10..400 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:31:30 Download gff for BS13058.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8397458..8397845 10..400 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:40 Download gff for BS13058.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8291491..8291878 10..400 99   Minus

BS13058.complete Sequence

416 bp assembled on 2006-11-01

GenBank Submission: FJ637369

> BS13058.complete
GAAGTTATCAGTCGACATGAGCAGCAATTCCAAGTCGAGATGGAGGAGTT
TGAAACTAGTTTATCAATTTGAAAGTAGCAACGATTTCGGAACAGAAAGA
GATGCAGAAGTCGACACCGGAGAAGGAGAGAATTCAAACCATGAGACTGA
AGTGCATCAGCCAGAGCAAGAGTCCACCGAGGATGAGCGATTCCAATGCC
ACGTCAAGAATGAGTCCATCAACGAAGATCTCTCAGAGGAAGAAGATTAC
AGCGAACTGAGCACATTAAGACTGGAGGACATTGAAGAGAATGTCCTCGA
AGGTACTCCTCGAATCGTTGAGATGCAGGATGACAGCAAAGTGCAACCAA
ACCACAAATACGTCAATGTAAAAATGTTTATTTTATATACATATAAATAA
AAGCTTTCTAGACCAT

BS13058.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG15345-RA 384 CG15345-PA 1..384 17..400 1920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG15345-RA 1085 CG15345-RA 401..784 17..400 1920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8397458..8397841 400..17 1920 100 Minus
Blast to na_te.dros performed 2014-11-27 16:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
Bari1 1728 Bari1 DMBARI1 1728bp AKA(S55767) Derived from X67681 (g7640) (Rel. 36, Last updated, Version 6). 1390..1462 407..335 113 65.3 Minus

BS13058.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:44 Download gff for BS13058.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 1..384 17..400 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:44 Download gff for BS13058.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 360..747 10..400 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:07 Download gff for BS13058.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 401..776 17..392 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:44 Download gff for BS13058.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 360..747 10..400 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:12 Download gff for BS13058.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 401..776 17..392 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:12 Download gff for BS13058.complete
Subject Subject Range Query Range Percent Splice Strand
X 8397466..8397841 17..392 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:07 Download gff for BS13058.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8291499..8291874 17..392 100   Minus

BS13058.pep Sequence

Translation from 16 to 399

> BS13058.pep
MSSNSKSRWRSLKLVYQFESSNDFGTERDAEVDTGEGENSNHETEVHQPE
QESTEDERFQCHVKNESINEDLSEEEDYSELSTLRLEDIEENVLEGTPRI
VEMQDDSKVQPNHKYVNVKMFILYTYK*

BS13058.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15345-PA 127 CG15345-PA 1..127 1..127 663 100 Plus