Clone BS13059 Report

Search the DGRC for BS13059

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG1142-RA
Protein status:BS13059.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13059.3prime Sequence

788 bp (655 high quality bases) assembled on 2006-10-13

> BS13059.3prime
ATGGTCTAGAAAGCTTTTATTTATTTTTCTTAAGTTTTTTCATTTTCTTC
AAGTTTTTCCGATAGGCGTATTTGTCTGTGCGCTTAATAACCTCGTTGAA
CTTCCTCTTGTTGAACTTCTGGAAGCTCTCGTCTTCTAACAACTCATTTA
CCAGCGACTGCTTCTTCTTGGACTTCTTTTCTTGGTAGTGATCCAAATGC
GAAGGTAGCACAGTACCGATTTGGAAAAATTTGGGCAGACTCTTAAGGTC
GTTCTTCTTGTAGAATTGCTTAGGGTTCAGAACCGATCGCATCTGAACTA
TTTTCAGTTCGTTTCGCATCTCGTCGGTGATCTCTGTGGCGGGCAGATTA
AACCATCCCTTGCCCTTGGTCTTTGAGCGTTCAGCTCTGTTGATGATGGG
TTGCTGCCTCTTTCCCACGGTGGGCAGTGCATGCGCCTGTTCTAGTCCTG
GATTCAAGGCCTGTTTCGTCCTCTTCATATTACTTTCCAGGTTTTCCTGC
CGCAGGTCCAGATGCGGAGCATCGTGGTTCAGTTCTGTTACCCGCTTCCG
GGGCACTACTTTCGGTTTGCTGGAGTTCTCCACTGCACTCTCGACCTTTT
CGCAGAGGTCCTCCAGCTGCTTGGCAACCTTGGATACCGGCTTCTTTCGG
TCAGGCAGGGAATTCACGACATCGAGCACTTCCTTGGAGTTCAACTTTAG
GCCAAAGAGCTCCACTGCGCCCTCATTTTGTTCCTCGTCCTCCTCGCTGT
GCGCGTCACTTTCTGTCAGGAGCAGCTCTTTGTTGTAC

BS13059.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1142-PA 846 CG1142-RA 75..846 788..17 3860 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1142-RA 911 CG1142-RA 119..891 788..16 3865 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7473260..7473663 385..788 2020 100 Plus
3R 32079331 3R 7472478..7472847 16..385 1850 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:08:56 has no hits.

BS13059.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:44 Download gff for BS13059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1142-PA 75..846 17..788 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:05 Download gff for BS13059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1142-RA 119..891 16..788 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:22:58 Download gff for BS13059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1142-RA 119..891 16..788 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:22:58 Download gff for BS13059.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7472478..7472847 16..385 100 <- Plus
3R 7473261..7473663 386..788 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:05 Download gff for BS13059.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3298200..3298569 16..385 100 <- Plus
arm_3R 3298983..3299385 386..788 100   Plus

BS13059.5prime Sequence

770 bp (692 high quality bases) assembled on 2006-10-13

> BS13059.5prime
GAAGTTATCAGTCGACATGGATTCTATTTTTCTGGTAGACACAACAGGAC
GCCAGGAATTCAATGGCGAGCAGCAGCAAAAGAAGATTGTGTACAACAAA
GAGCTGCTCCTGACAGAAAGTGACGCGCACAGCGAGGAGGACGAGGAACA
AAATGAGGGCGCAGTGGAGCTCTTTGGCCTAAAGTTGAACTCCAAGGAAG
TGCTCGATGTCGTGAATTCCCTGCCTGACCGAAAGAAGCCGGTATCCAAG
GTTGCCAAGCAGCTGGAGGACCTCTGCGAAAAGGTCGAGAGTGCAGTGGA
GAACTCCAGCAAACCGAAAGTAGTGCCCCGGAAGCGGGTAACAGAACTGA
ACCACGATGCTCCGCATCTGGACCTGCGGCAGGAAAACCTGGAAAGTAAT
ATGAAGAGGACGAAACAGGCCTTGAATCCAGGACTAGAACAGGCGCATGC
ACTGCCCACCGTGGGAAAGAGGCAGCAACCCATCATCAACAGAGCTGAAC
GCTCAAAGACCAAGGGCAAGGGATGGTTTAATCTGCCCGCCACAGAGATC
ACCGACGAGATGCGAAACGAACTGAAAATAGTTCAGATGCGATCGGTTCT
GAACCCTAAGCAATTCTACAAGAAGAACGACCTTAAGAGTCTGCCCAAAT
TTTTCCAAATCGGTACTGTGCTACCTTCGCATTTGGATCACTACCAAGAA
AAGAAGTCCAAGAAGAAGCAGTCGCTGGTAAATGAGTTGTTAGAAAACGA
GAGCTTCCAGAAGTTCAACA

BS13059.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1142-PA 846 CG1142-RA 1..754 17..770 3745 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1142-RA 911 CG1142-RA 45..798 17..770 3755 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7473260..7473737 494..17 2390 100 Minus
3R 32079331 3R 7472571..7472847 770..494 1370 99.6 Minus
Blast to na_te.dros performed on 2015-02-12 17:55:53 has no hits.

BS13059.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:44 Download gff for BS13059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1142-PA 1..753 17..769 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:13 Download gff for BS13059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1142-RA 39..797 9..769 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:52:21 Download gff for BS13059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1142-RA 39..797 9..769 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:52:21 Download gff for BS13059.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7472572..7472847 494..769 99 <- Minus
3R 7473261..7473743 9..493 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:13 Download gff for BS13059.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3298294..3298569 494..769 99 <- Minus
arm_3R 3298983..3299465 9..493 99   Minus

BS13059.complete Sequence

878 bp assembled on 2006-11-01

GenBank Submission: FJ637370

> BS13059.complete
GAAGTTATCAGTCGACATGGATTCTATTTTTCTGGTAGACACAACAGGAC
GCCAGGAATTCAATGGCGAGCAGCAGCAAAAGAAGATTGTGTACAACAAA
GAGCTGCTCCTGACAGAAAGTGACGCGCACAGCGAGGAGGACGAGGAACA
AAATGAGGGCGCAGTGGAGCTCTTTGGCCTAAAGTTGAACTCCAAGGAAG
TGCTCGATGTCGTGAATTCCCTGCCTGACCGAAAGAAGCCGGTATCCAAG
GTTGCCAAGCAGCTGGAGGACCTCTGCGAAAAGGTCGAGAGTGCAGTGGA
GAACTCCAGCAAACCGAAAGTAGTGCCCCGGAAGCGGGTAACAGAACTGA
ACCACGATGCTCCGCATCTGGACCTGCGGCAGGAAAACCTGGAAAGTAAT
ATGAAGAGGACGAAACAGGCCTTGAATCCAGGACTAGAACAGGCGCATGC
ACTGCCCACCGTGGGAAAGAGGCAGCAACCCATCATCAACAGAGCTGAAC
GCTCAAAGACCAAGGGCAAGGGATGGTTTAATCTGCCCGCCACAGAGATC
ACCGACGAGATGCGAAACGAACTGAAAATAGTTCAGATGCGATCGGTTCT
GAACCCTAAGCAATTCTACAAGAAGAACGACCTTAAGAGTCTGCCCAAAT
TTTTCCAAATCGGTACTGTGCTACCTTCGCATTTGGATCACTACCAAGAA
AAGAAGTCCAAGAAGAAGCAGTCGCTGGTAAATGAGTTGTTAGAAGACGA
GAGCTTCCAGAAGTTCAACAAGAGGAAGTTCAACGAGGTTATTAAGCGCA
CAGACAAATACGCCTATCGGAAAAACTTGAAGAAAATGAAAAAACTTAAG
AAAAATAAATAAAAGCTTTCTAGACCAT

BS13059.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1142-RA 846 CG1142-PA 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1142-RA 911 CG1142-RA 45..891 17..863 4235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7473260..7473737 494..17 2390 100 Minus
3R 32079331 3R 7472478..7472847 863..494 1850 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:44:24 has no hits.

BS13059.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:26 Download gff for BS13059.complete
Subject Subject Range Query Range Percent Splice Strand
CG1142-RA 1..846 17..862 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:22 Download gff for BS13059.complete
Subject Subject Range Query Range Percent Splice Strand
CG1142-RA 32..884 9..863 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:44 Download gff for BS13059.complete
Subject Subject Range Query Range Percent Splice Strand
CG1142-RA 45..875 17..847 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:26 Download gff for BS13059.complete
Subject Subject Range Query Range Percent Splice Strand
CG1142-RA 32..884 9..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:25 Download gff for BS13059.complete
Subject Subject Range Query Range Percent Splice Strand
CG1142-RA 45..875 17..847 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:25 Download gff for BS13059.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7472494..7472847 494..847 100 <- Minus
3R 7473261..7473737 17..493 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:44 Download gff for BS13059.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3298216..3298569 494..847 100 <- Minus
arm_3R 3298983..3299459 17..493 100   Minus

BS13059.pep Sequence

Translation from 16 to 861

> BS13059.pep
MDSIFLVDTTGRQEFNGEQQQKKIVYNKELLLTESDAHSEEDEEQNEGAV
ELFGLKLNSKEVLDVVNSLPDRKKPVSKVAKQLEDLCEKVESAVENSSKP
KVVPRKRVTELNHDAPHLDLRQENLESNMKRTKQALNPGLEQAHALPTVG
KRQQPIINRAERSKTKGKGWFNLPATEITDEMRNELKIVQMRSVLNPKQF
YKKNDLKSLPKFFQIGTVLPSHLDHYQEKKSKKKQSLVNELLEDESFQKF
NKRKFNEVIKRTDKYAYRKNLKKMKKLKKNK*

BS13059.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1142-PA 281 CG1142-PA 1..281 1..281 1435 100 Plus