Clone Sequence Records
BS13059.3prime Sequence
788 bp (655 high quality bases) assembled on 2006-10-13
> BS13059.3prime
ATGGTCTAGAAAGCTTTTATTTATTTTTCTTAAGTTTTTTCATTTTCTTC
AAGTTTTTCCGATAGGCGTATTTGTCTGTGCGCTTAATAACCTCGTTGAA
CTTCCTCTTGTTGAACTTCTGGAAGCTCTCGTCTTCTAACAACTCATTTA
CCAGCGACTGCTTCTTCTTGGACTTCTTTTCTTGGTAGTGATCCAAATGC
GAAGGTAGCACAGTACCGATTTGGAAAAATTTGGGCAGACTCTTAAGGTC
GTTCTTCTTGTAGAATTGCTTAGGGTTCAGAACCGATCGCATCTGAACTA
TTTTCAGTTCGTTTCGCATCTCGTCGGTGATCTCTGTGGCGGGCAGATTA
AACCATCCCTTGCCCTTGGTCTTTGAGCGTTCAGCTCTGTTGATGATGGG
TTGCTGCCTCTTTCCCACGGTGGGCAGTGCATGCGCCTGTTCTAGTCCTG
GATTCAAGGCCTGTTTCGTCCTCTTCATATTACTTTCCAGGTTTTCCTGC
CGCAGGTCCAGATGCGGAGCATCGTGGTTCAGTTCTGTTACCCGCTTCCG
GGGCACTACTTTCGGTTTGCTGGAGTTCTCCACTGCACTCTCGACCTTTT
CGCAGAGGTCCTCCAGCTGCTTGGCAACCTTGGATACCGGCTTCTTTCGG
TCAGGCAGGGAATTCACGACATCGAGCACTTCCTTGGAGTTCAACTTTAG
GCCAAAGAGCTCCACTGCGCCCTCATTTTGTTCCTCGTCCTCCTCGCTGT
GCGCGTCACTTTCTGTCAGGAGCAGCTCTTTGTTGTAC
BS13059.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1142-PA | 846 | CG1142-RA | 75..846 | 788..17 | 3860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1142-RA | 911 | CG1142-RA | 119..891 | 788..16 | 3865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7473260..7473663 | 385..788 | 2020 | 100 | Plus |
3R | 32079331 | 3R | 7472478..7472847 | 16..385 | 1850 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:08:56 has no hits.
BS13059.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:44 Download gff for
BS13059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1142-PA | 75..846 | 17..788 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:05 Download gff for
BS13059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1142-RA | 119..891 | 16..788 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:22:58 Download gff for
BS13059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1142-RA | 119..891 | 16..788 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:22:58 Download gff for
BS13059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7472478..7472847 | 16..385 | 100 | <- | Plus |
3R | 7473261..7473663 | 386..788 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:05 Download gff for
BS13059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3298200..3298569 | 16..385 | 100 | <- | Plus |
arm_3R | 3298983..3299385 | 386..788 | 100 | | Plus |
BS13059.5prime Sequence
770 bp (692 high quality bases) assembled on 2006-10-13
> BS13059.5prime
GAAGTTATCAGTCGACATGGATTCTATTTTTCTGGTAGACACAACAGGAC
GCCAGGAATTCAATGGCGAGCAGCAGCAAAAGAAGATTGTGTACAACAAA
GAGCTGCTCCTGACAGAAAGTGACGCGCACAGCGAGGAGGACGAGGAACA
AAATGAGGGCGCAGTGGAGCTCTTTGGCCTAAAGTTGAACTCCAAGGAAG
TGCTCGATGTCGTGAATTCCCTGCCTGACCGAAAGAAGCCGGTATCCAAG
GTTGCCAAGCAGCTGGAGGACCTCTGCGAAAAGGTCGAGAGTGCAGTGGA
GAACTCCAGCAAACCGAAAGTAGTGCCCCGGAAGCGGGTAACAGAACTGA
ACCACGATGCTCCGCATCTGGACCTGCGGCAGGAAAACCTGGAAAGTAAT
ATGAAGAGGACGAAACAGGCCTTGAATCCAGGACTAGAACAGGCGCATGC
ACTGCCCACCGTGGGAAAGAGGCAGCAACCCATCATCAACAGAGCTGAAC
GCTCAAAGACCAAGGGCAAGGGATGGTTTAATCTGCCCGCCACAGAGATC
ACCGACGAGATGCGAAACGAACTGAAAATAGTTCAGATGCGATCGGTTCT
GAACCCTAAGCAATTCTACAAGAAGAACGACCTTAAGAGTCTGCCCAAAT
TTTTCCAAATCGGTACTGTGCTACCTTCGCATTTGGATCACTACCAAGAA
AAGAAGTCCAAGAAGAAGCAGTCGCTGGTAAATGAGTTGTTAGAAAACGA
GAGCTTCCAGAAGTTCAACA
BS13059.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1142-PA | 846 | CG1142-RA | 1..754 | 17..770 | 3745 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1142-RA | 911 | CG1142-RA | 45..798 | 17..770 | 3755 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:55:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7473260..7473737 | 494..17 | 2390 | 100 | Minus |
3R | 32079331 | 3R | 7472571..7472847 | 770..494 | 1370 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:55:53 has no hits.
BS13059.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:44 Download gff for
BS13059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1142-PA | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:13 Download gff for
BS13059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1142-RA | 39..797 | 9..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:52:21 Download gff for
BS13059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1142-RA | 39..797 | 9..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:52:21 Download gff for
BS13059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7472572..7472847 | 494..769 | 99 | <- | Minus |
3R | 7473261..7473743 | 9..493 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:13 Download gff for
BS13059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3298294..3298569 | 494..769 | 99 | <- | Minus |
arm_3R | 3298983..3299465 | 9..493 | 99 | | Minus |
BS13059.complete Sequence
878 bp assembled on 2006-11-01
GenBank Submission: FJ637370
> BS13059.complete
GAAGTTATCAGTCGACATGGATTCTATTTTTCTGGTAGACACAACAGGAC
GCCAGGAATTCAATGGCGAGCAGCAGCAAAAGAAGATTGTGTACAACAAA
GAGCTGCTCCTGACAGAAAGTGACGCGCACAGCGAGGAGGACGAGGAACA
AAATGAGGGCGCAGTGGAGCTCTTTGGCCTAAAGTTGAACTCCAAGGAAG
TGCTCGATGTCGTGAATTCCCTGCCTGACCGAAAGAAGCCGGTATCCAAG
GTTGCCAAGCAGCTGGAGGACCTCTGCGAAAAGGTCGAGAGTGCAGTGGA
GAACTCCAGCAAACCGAAAGTAGTGCCCCGGAAGCGGGTAACAGAACTGA
ACCACGATGCTCCGCATCTGGACCTGCGGCAGGAAAACCTGGAAAGTAAT
ATGAAGAGGACGAAACAGGCCTTGAATCCAGGACTAGAACAGGCGCATGC
ACTGCCCACCGTGGGAAAGAGGCAGCAACCCATCATCAACAGAGCTGAAC
GCTCAAAGACCAAGGGCAAGGGATGGTTTAATCTGCCCGCCACAGAGATC
ACCGACGAGATGCGAAACGAACTGAAAATAGTTCAGATGCGATCGGTTCT
GAACCCTAAGCAATTCTACAAGAAGAACGACCTTAAGAGTCTGCCCAAAT
TTTTCCAAATCGGTACTGTGCTACCTTCGCATTTGGATCACTACCAAGAA
AAGAAGTCCAAGAAGAAGCAGTCGCTGGTAAATGAGTTGTTAGAAGACGA
GAGCTTCCAGAAGTTCAACAAGAGGAAGTTCAACGAGGTTATTAAGCGCA
CAGACAAATACGCCTATCGGAAAAACTTGAAGAAAATGAAAAAACTTAAG
AAAAATAAATAAAAGCTTTCTAGACCAT
BS13059.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1142-RA | 846 | CG1142-PA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1142-RA | 911 | CG1142-RA | 45..891 | 17..863 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7473260..7473737 | 494..17 | 2390 | 100 | Minus |
3R | 32079331 | 3R | 7472478..7472847 | 863..494 | 1850 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:44:24 has no hits.
BS13059.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:26 Download gff for
BS13059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1142-RA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:22 Download gff for
BS13059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1142-RA | 32..884 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:44 Download gff for
BS13059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1142-RA | 45..875 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:26 Download gff for
BS13059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1142-RA | 32..884 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:25 Download gff for
BS13059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1142-RA | 45..875 | 17..847 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:25 Download gff for
BS13059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7472494..7472847 | 494..847 | 100 | <- | Minus |
3R | 7473261..7473737 | 17..493 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:44 Download gff for
BS13059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3298216..3298569 | 494..847 | 100 | <- | Minus |
arm_3R | 3298983..3299459 | 17..493 | 100 | | Minus |
BS13059.pep Sequence
Translation from 16 to 861
> BS13059.pep
MDSIFLVDTTGRQEFNGEQQQKKIVYNKELLLTESDAHSEEDEEQNEGAV
ELFGLKLNSKEVLDVVNSLPDRKKPVSKVAKQLEDLCEKVESAVENSSKP
KVVPRKRVTELNHDAPHLDLRQENLESNMKRTKQALNPGLEQAHALPTVG
KRQQPIINRAERSKTKGKGWFNLPATEITDEMRNELKIVQMRSVLNPKQF
YKKNDLKSLPKFFQIGTVLPSHLDHYQEKKSKKKQSLVNELLEDESFQKF
NKRKFNEVIKRTDKYAYRKNLKKMKKLKKNK*
BS13059.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1142-PA | 281 | CG1142-PA | 1..281 | 1..281 | 1435 | 100 | Plus |