Clone BS13060 Report

Search the DGRC for BS13060

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG5969-RA
Protein status:BS13060.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13060.5prime Sequence

348 bp (348 high quality bases) assembled on 2006-10-13

> BS13060.5prime
GAAGTTATCAGTCGACATGTCGACCAAGAACAAGAAAGCCGCCGGAGGCA
ACGGAGTTGCGCCGAAACAAACCCGCCAGCAGTCGCACGACTCGCAGGAC
TACAGCTCCTTCAAGACAGTGCTCTTCTACTGCATGCTTATCGTTTTCCT
GCCCGTGCTGACCTTCTTTGTGCTGAAGGGCTTCGTTCTGGACCAGTTCC
TCGACATTTCCGAAGTCAAAGTGAACATAGCATCCGCCGTGGGAGCGGTC
GTTGCATTGCACATCGCCCTGGGACTCTATATATACAGGGCCTACTTTGG
GGCACCCGGTTCCAAGGGCTCCAAAACGGACTAAAAGCTTTCTAGACC

BS13060.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5969-PA 318 CG5969-RA 1..318 17..334 1590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5969-RA 947 CG5969-RA 116..433 17..334 1590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20474032..20474277 89..334 1230 100 Plus
3L 28110227 3L 20473898..20473970 17..89 365 100 Plus
Blast to na_te.dros performed on 2015-01-30 18:07:28 has no hits.

BS13060.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:45 Download gff for BS13060.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5969-PA 1..318 17..334 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:18 Download gff for BS13060.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5969-RA 116..437 17..339 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:34 Download gff for BS13060.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5969-RA 116..437 17..339 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:34 Download gff for BS13060.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20473898..20473969 17..88 100 -> Plus
3L 20474032..20474281 89..339 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:18 Download gff for BS13060.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20466998..20467069 17..88 100 -> Plus
arm_3L 20467132..20467381 89..339 98   Plus

BS13060.3prime Sequence

348 bp (348 high quality bases) assembled on 2006-10-13

> BS13060.3prime
ATGGTCTAGAAAGCTTTTAGTCCGTTTTGGAGCCCTTGGAACCGGGTGCC
CCAAAGTAGGCCCTGTATATATAGAGTCCCAGGGCGATGTGCAATGCAAC
GACCGCTCCCACGGCGGATGCTATGTTCACTTTGACTTCGGAAATGTCGA
GGAACTGGTCCAGAACGAAGCCCTTCAGCACAAAGAAGGTCAGCACGGGC
AGGAAAACGATAAGCATGCAGTAGAAGAGCACTGTCTTGAAGGAGCTGTA
GTCCTGCGAGTCGTGCGACTGCTGGCGGGTTTGTTTCGGCGCAACTCCGT
TGCCTCCGGCGGCTTTCTTGTTCTTGGTCGACATGTCGACTGATAACT

BS13060.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5969-PA 318 CG5969-RA 1..318 334..17 1590 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5969-RA 947 CG5969-RA 116..433 334..17 1590 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20474032..20474277 262..17 1230 100 Minus
3L 28110227 3L 20473898..20473970 334..262 365 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:54:33 has no hits.

BS13060.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:44 Download gff for BS13060.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5969-PA 1..318 17..334 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:42 Download gff for BS13060.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5969-RA 116..437 12..334 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:33 Download gff for BS13060.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5969-RA 116..437 12..334 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:33 Download gff for BS13060.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20473898..20473969 263..334 100 -> Minus
3L 20474032..20474281 12..262 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:42 Download gff for BS13060.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20466998..20467069 263..334 100 -> Minus
arm_3L 20467132..20467381 12..262 98   Minus

BS13060.complete Sequence

350 bp assembled on 2006-11-01

GenBank Submission: FJ637371

> BS13060.complete
GAAGTTATCAGTCGACATGTCGACCAAGAACAAGAAAGCCGCCGGAGGCA
ACGGAGTTGCGCCGAAACAAACCCGCCAGCAGTCGCACGACTCGCAGGAC
TACAGCTCCTTCAAGACAGTGCTCTTCTACTGCATGCTTATCGTTTTCCT
GCCCGTGCTGACCTTCTTTGTGCTGAAGGGCTTCGTTCTGGACCAGTTCC
TCGACATTTCCGAAGTCAAAGTGAACATAGCATCCGCCGTGGGAGCGGTC
GTTGCATTGCACATCGCCCTGGGACTCTATATATACAGGGCCTACTTTGG
GGCACCCGGTTCCAAGGGCTCCAAAACGGACTAAAAGCTTTCTAGACCAT

BS13060.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5969-RA 318 CG5969-PA 1..318 17..334 1590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5969-RA 947 CG5969-RA 116..433 17..334 1590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20474032..20474277 89..334 1230 100 Plus
3L 28110227 3L 20473898..20473970 17..89 365 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:40:06 has no hits.

BS13060.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:39 Download gff for BS13060.complete
Subject Subject Range Query Range Percent Splice Strand
CG5969-RA 1..318 17..334 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:07 Download gff for BS13060.complete
Subject Subject Range Query Range Percent Splice Strand
CG5969-RA 102..423 17..339 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:35 Download gff for BS13060.complete
Subject Subject Range Query Range Percent Splice Strand
CG5969-RA 116..431 17..332 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:40 Download gff for BS13060.complete
Subject Subject Range Query Range Percent Splice Strand
CG5969-RA 102..423 17..339 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:11 Download gff for BS13060.complete
Subject Subject Range Query Range Percent Splice Strand
CG5969-RA 116..431 17..332 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:11 Download gff for BS13060.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20473898..20473969 17..88 100 -> Plus
3L 20474032..20474275 89..332 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:35 Download gff for BS13060.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20466998..20467069 17..88 100 -> Plus
arm_3L 20467132..20467375 89..332 100   Plus

BS13060.pep Sequence

Translation from 16 to 333

> BS13060.pep
MSTKNKKAAGGNGVAPKQTRQQSHDSQDYSSFKTVLFYCMLIVFLPVLTF
FVLKGFVLDQFLDISEVKVNIASAVGAVVALHIALGLYIYRAYFGAPGSK
GSKTD*

BS13060.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5969-PA 105 CG5969-PA 1..105 1..105 531 100 Plus