Clone Sequence Records
BS13060.5prime Sequence
348 bp (348 high quality bases) assembled on 2006-10-13
> BS13060.5prime
GAAGTTATCAGTCGACATGTCGACCAAGAACAAGAAAGCCGCCGGAGGCA
ACGGAGTTGCGCCGAAACAAACCCGCCAGCAGTCGCACGACTCGCAGGAC
TACAGCTCCTTCAAGACAGTGCTCTTCTACTGCATGCTTATCGTTTTCCT
GCCCGTGCTGACCTTCTTTGTGCTGAAGGGCTTCGTTCTGGACCAGTTCC
TCGACATTTCCGAAGTCAAAGTGAACATAGCATCCGCCGTGGGAGCGGTC
GTTGCATTGCACATCGCCCTGGGACTCTATATATACAGGGCCTACTTTGG
GGCACCCGGTTCCAAGGGCTCCAAAACGGACTAAAAGCTTTCTAGACC
BS13060.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5969-PA | 318 | CG5969-RA | 1..318 | 17..334 | 1590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5969-RA | 947 | CG5969-RA | 116..433 | 17..334 | 1590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:07:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20474032..20474277 | 89..334 | 1230 | 100 | Plus |
3L | 28110227 | 3L | 20473898..20473970 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:07:28 has no hits.
BS13060.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:45 Download gff for
BS13060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-PA | 1..318 | 17..334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:18 Download gff for
BS13060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-RA | 116..437 | 17..339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:34 Download gff for
BS13060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-RA | 116..437 | 17..339 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:34 Download gff for
BS13060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20473898..20473969 | 17..88 | 100 | -> | Plus |
3L | 20474032..20474281 | 89..339 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:18 Download gff for
BS13060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20466998..20467069 | 17..88 | 100 | -> | Plus |
arm_3L | 20467132..20467381 | 89..339 | 98 | | Plus |
BS13060.3prime Sequence
348 bp (348 high quality bases) assembled on 2006-10-13
> BS13060.3prime
ATGGTCTAGAAAGCTTTTAGTCCGTTTTGGAGCCCTTGGAACCGGGTGCC
CCAAAGTAGGCCCTGTATATATAGAGTCCCAGGGCGATGTGCAATGCAAC
GACCGCTCCCACGGCGGATGCTATGTTCACTTTGACTTCGGAAATGTCGA
GGAACTGGTCCAGAACGAAGCCCTTCAGCACAAAGAAGGTCAGCACGGGC
AGGAAAACGATAAGCATGCAGTAGAAGAGCACTGTCTTGAAGGAGCTGTA
GTCCTGCGAGTCGTGCGACTGCTGGCGGGTTTGTTTCGGCGCAACTCCGT
TGCCTCCGGCGGCTTTCTTGTTCTTGGTCGACATGTCGACTGATAACT
BS13060.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5969-PA | 318 | CG5969-RA | 1..318 | 334..17 | 1590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5969-RA | 947 | CG5969-RA | 116..433 | 334..17 | 1590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20474032..20474277 | 262..17 | 1230 | 100 | Minus |
3L | 28110227 | 3L | 20473898..20473970 | 334..262 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:54:33 has no hits.
BS13060.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:44 Download gff for
BS13060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-PA | 1..318 | 17..334 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:42 Download gff for
BS13060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-RA | 116..437 | 12..334 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:33 Download gff for
BS13060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-RA | 116..437 | 12..334 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:33 Download gff for
BS13060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20473898..20473969 | 263..334 | 100 | -> | Minus |
3L | 20474032..20474281 | 12..262 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:42 Download gff for
BS13060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20466998..20467069 | 263..334 | 100 | -> | Minus |
arm_3L | 20467132..20467381 | 12..262 | 98 | | Minus |
BS13060.complete Sequence
350 bp assembled on 2006-11-01
GenBank Submission: FJ637371
> BS13060.complete
GAAGTTATCAGTCGACATGTCGACCAAGAACAAGAAAGCCGCCGGAGGCA
ACGGAGTTGCGCCGAAACAAACCCGCCAGCAGTCGCACGACTCGCAGGAC
TACAGCTCCTTCAAGACAGTGCTCTTCTACTGCATGCTTATCGTTTTCCT
GCCCGTGCTGACCTTCTTTGTGCTGAAGGGCTTCGTTCTGGACCAGTTCC
TCGACATTTCCGAAGTCAAAGTGAACATAGCATCCGCCGTGGGAGCGGTC
GTTGCATTGCACATCGCCCTGGGACTCTATATATACAGGGCCTACTTTGG
GGCACCCGGTTCCAAGGGCTCCAAAACGGACTAAAAGCTTTCTAGACCAT
BS13060.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5969-RA | 318 | CG5969-PA | 1..318 | 17..334 | 1590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5969-RA | 947 | CG5969-RA | 116..433 | 17..334 | 1590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20474032..20474277 | 89..334 | 1230 | 100 | Plus |
3L | 28110227 | 3L | 20473898..20473970 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:40:06 has no hits.
BS13060.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:39 Download gff for
BS13060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-RA | 1..318 | 17..334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:07 Download gff for
BS13060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-RA | 102..423 | 17..339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:35 Download gff for
BS13060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-RA | 116..431 | 17..332 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:40 Download gff for
BS13060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-RA | 102..423 | 17..339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:11 Download gff for
BS13060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-RA | 116..431 | 17..332 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:11 Download gff for
BS13060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20473898..20473969 | 17..88 | 100 | -> | Plus |
3L | 20474032..20474275 | 89..332 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:35 Download gff for
BS13060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20466998..20467069 | 17..88 | 100 | -> | Plus |
arm_3L | 20467132..20467375 | 89..332 | 100 | | Plus |
BS13060.pep Sequence
Translation from 16 to 333
> BS13060.pep
MSTKNKKAAGGNGVAPKQTRQQSHDSQDYSSFKTVLFYCMLIVFLPVLTF
FVLKGFVLDQFLDISEVKVNIASAVGAVVALHIALGLYIYRAYFGAPGSK
GSKTD*
BS13060.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5969-PA | 105 | CG5969-PA | 1..105 | 1..105 | 531 | 100 | Plus |