Clone Sequence Records
BS13063.3prime Sequence
522 bp (522 high quality bases) assembled on 2006-10-13
> BS13063.3prime
ATGGTCTAGAAAGCTTCTAAACTTGCTCCGGCGGCTGGCGCAAGTGCTCT
GGGATCTCCTGCAGCTCAGTCCTGGAAGCCTGCAGCGCTACGCCCTCGGG
CAGATTACGTTCAATATACTCTAGAAATGTATCTAGCGTGGAGCCCGTCA
ACTTGTGGAAGTTCATATAGCGGAAGTGGGTTCGCACCTCGTACTGTACG
CGATGTTTCTTGTAGATATGCACCGACTTCAGGAGCGTCATCCGCTCGTG
GTGCGCCTTGCGAGGTGACCAACATTTTCCCTTTTCAATGCCCAAATGCT
CGGCAGCAGTAGTAGCAAACCAGGTGTAGCTCTTCAGAACTGCCGGATCA
ATACCCCGCAGCTCAATCTCCAGCTTGCTGTAGAGTTTATCCGGTTCCGG
AGCAGGTGCCGCAGGTGAAAGATTGCCTTGTACGCCGGAACTGGTGTTTA
CCGTGGACAGAGCCCGCATTGGCTGTGTCCAGCGGAGCGTCTTTATAGCC
TGTAACATGTCGACTGATAACT
BS13063.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4247-PA | 492 | mRpS10-RA | 1..492 | 508..17 | 2460 | 100 | Minus |
| CG4247-PB | 522 | mRpS10-RB | 37..522 | 502..17 | 2430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:07:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS10-RA | 723 | CG4247-RA | 68..559 | 508..17 | 2460 | 100 | Minus |
| mRpS10-RB | 746 | CG4247-RB | 97..582 | 502..17 | 2430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:07:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15230096..15230352 | 273..17 | 1285 | 100 | Minus |
| 3R | 32079331 | 3R | 15229798..15230027 | 502..273 | 1150 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:07:40 has no hits.
BS13063.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:46 Download gff for
BS13063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4247-PA | 1..492 | 17..508 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:20 Download gff for
BS13063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS10-RA | 68..559 | 17..508 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:36 Download gff for
BS13063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS10-RA | 68..559 | 17..508 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:36 Download gff for
BS13063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15229791..15230027 | 273..508 | 98 | -> | Minus |
| 3R | 15230097..15230352 | 17..272 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:20 Download gff for
BS13063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11055513..11055749 | 273..508 | 98 | -> | Minus |
| arm_3R | 11055819..11056074 | 17..272 | 100 | | Minus |
BS13063.5prime Sequence
522 bp (522 high quality bases) assembled on 2006-10-13
> BS13063.5prime
GAAGTTATCAGTCGACATGTTACAGGCTATAAAGACGCTCCGCTGGACAC
AGCCAATGCGGGCTCTGTCCACGGTAAACACCAGTTCCGGCGTACAAGGC
AATCTTTCACCTGCGGCACCTGCTCCGGAACCGGATAAACTCTACAGCAA
GCTGGAGATTGAGCTGCGGGGTATTGATCCGGCAGTTCTGAAGAGCTACA
CCTGGTTTGCTACTACTGCTGCCGAGCATTTGGGCATTGAAAAGGGAAAA
TGTTGGTCACCTCGCAAGGCGCACCACGAGCGGATGACGCTCCTGAAGTC
GGTGCATATCTACAAGAAACATCGCGTACAGTACGAGGTGCGAACCCACT
TCCGCTATATGAACTTCCACAAGTTGACGGGCTCCACGCTAGATACATTT
CTAGAGTATATTGAACGTAATCTGCCCGAGGGCGTAGCGCTGCAGGCTTC
CAGGACTGAGCTGCAGGAGATCCCAGAGCACTTGCGCCAGCCGCCGGAGC
AAGTTTAGAAGCTTTCTAGACC
BS13063.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4247-PA | 492 | mRpS10-RA | 1..492 | 17..508 | 2460 | 100 | Plus |
| CG4247-PB | 522 | mRpS10-RB | 37..522 | 23..508 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS10-RA | 723 | CG4247-RA | 68..559 | 17..508 | 2460 | 100 | Plus |
| mRpS10-RB | 746 | CG4247-RB | 97..582 | 23..508 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:44:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15230096..15230352 | 252..508 | 1285 | 100 | Plus |
| 3R | 32079331 | 3R | 15229798..15230027 | 23..252 | 1150 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:44:16 has no hits.
BS13063.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:47 Download gff for
BS13063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4247-PA | 1..492 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:47 Download gff for
BS13063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS10-RA | 68..559 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:21 Download gff for
BS13063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS10-RA | 68..559 | 17..508 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:21 Download gff for
BS13063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15229791..15230027 | 17..252 | 98 | -> | Plus |
| 3R | 15230097..15230352 | 253..508 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:47 Download gff for
BS13063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11055513..11055749 | 17..252 | 98 | -> | Plus |
| arm_3R | 11055819..11056074 | 253..508 | 100 | | Plus |
BS13063.complete Sequence
524 bp assembled on 2006-11-01
GenBank Submission: FJ637372
> BS13063.complete
GAAGTTATCAGTCGACATGTTACAGGCTATAAAGACGCTCCGCTGGACAC
AGCCAATGCGGGCTCTGTCCACGGTAAACACCAGTTCCGGCGTACAAGGC
AATCTTTCACCTGCGGCACCTGCTCCGGAACCGGATAAACTCTACAGCAA
GCTGGAGATTGAGCTGCGGGGTATTGATCCGGCAGTTCTGAAGAGCTACA
CCTGGTTTGCTACTACTGCTGCCGAGCATTTGGGCATTGAAAAGGGAAAA
TGTTGGTCACCTCGCAAGGCGCACCACGAGCGGATGACGCTCCTGAAGTC
GGTGCATATCTACAAGAAACATCGCGTACAGTACGAGGTGCGAACCCACT
TCCGCTATATGAACTTCCACAAGTTGACGGGCTCCACGCTAGATACATTT
CTAGAGTATATTGAACGTAATCTGCCCGAGGGCGTAGCGCTGCAGGCTTC
CAGGACTGAGCTGCAGGAGATCCCAGAGCACTTGCGCCAGCCGCCGGAGC
AAGTTTAGAAGCTTTCTAGACCAT
BS13063.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:01:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS10-RA | 492 | CG4247-PA | 1..492 | 17..508 | 2460 | 100 | Plus |
| mRpS10-RB | 522 | CG4247-PB | 37..522 | 23..508 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS10-RA | 723 | CG4247-RA | 68..559 | 17..508 | 2460 | 100 | Plus |
| mRpS10-RB | 746 | CG4247-RB | 97..582 | 23..508 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15230096..15230352 | 252..508 | 1285 | 100 | Plus |
| 3R | 32079331 | 3R | 15229798..15230027 | 23..252 | 1150 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:01:12 has no hits.
BS13063.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:27 Download gff for
BS13063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS10-RC | 1..492 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:24 Download gff for
BS13063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34316-RB | 58..549 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:42:42 Download gff for
BS13063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS10-RA | 73..559 | 22..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:27 Download gff for
BS13063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34316-RB | 58..549 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:24 Download gff for
BS13063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS10-RA | 73..559 | 22..508 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:24 Download gff for
BS13063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15229797..15230027 | 22..252 | 99 | -> | Plus |
| 3R | 15230097..15230352 | 253..508 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:42:42 Download gff for
BS13063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11055519..11055749 | 22..252 | 99 | -> | Plus |
| arm_3R | 11055819..11056074 | 253..508 | 100 | | Plus |
BS13063.pep Sequence
Translation from 16 to 507
> BS13063.pep
MLQAIKTLRWTQPMRALSTVNTSSGVQGNLSPAAPAPEPDKLYSKLEIEL
RGIDPAVLKSYTWFATTAAEHLGIEKGKCWSPRKAHHERMTLLKSVHIYK
KHRVQYEVRTHFRYMNFHKLTGSTLDTFLEYIERNLPEGVALQASRTELQ
EIPEHLRQPPEQV*
BS13063.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS10-PA | 163 | CG4247-PA | 1..163 | 1..163 | 858 | 100 | Plus |
| mRpS10-PB | 173 | CG4247-PB | 13..173 | 3..163 | 849 | 100 | Plus |
