Clone BS13064 Report

Search the DGRC for BS13064

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:64
Vector:pDNR-Dual
Associated Gene/Transcriptmys-RA
Protein status:BS13064.pep: full length peptide match
Sequenced Size:2573

Clone Sequence Records

BS13064.complete Sequence

2573 bp assembled on 2009-12-07

GenBank Submission: KX806112

> BS13064.complete
GAAGTTATCAGTCGACATGATCCTCGAGAGAAACCGGAGGTGCCAGCTGG
CCCTCCTCATGATCGCAATACTGGCCGCCATCGCTGGACAAACGGATGCC
CAGAAGGCGGCCAAACTGACGGCAGTGAGCACATGTGCATCGAAGGAAAA
GTGTCACACCTGCATCCAGACAGAGGGTTGCGCCTGGTGCATGCAGCCGG
ACTTTAAGGGCCAGTCGCGGTGCTACCAAAACACCAGCTCACTGTGTCCG
GAGGAGTTCGCCTACAGTCCGATAACAGTTGAGCAGATTCTAGTGAACAA
CAAACTAACGAATCAATACAAAGCTGAACTGGCGGCTGGTGGCGGCGGCT
CCGCCATGTCCGGCAGCAGCTCAAGCTCCTACTCGTCGAGTTCGAGCTCG
TCGAGCTTCTACTCGCAGAGCTCCTCGGGATCCAGTTCCGCCAGCGGATA
CGAAGAGTACTCTGCCGGCGAAATTGTCCAAATCCAACCGCAGTCCATGC
GACTCGCATTGCGCGTCAATGAGAAACACAACATCAAGATTAGCTATTCC
CAGGCGGAGGGATATCCGGTGGATCTCTACTACTTGATGGATCTCTCCAA
ATCTATGGAGGACGACAAGGCCAAATTGTCTACGCTGGGCGACAAGTTGT
CCGAGACCATGAAACGCATCACCAACAATTTCCATCTTGGTTTCGGTTCG
TTTGTGGACAAGGTGCTCATGCCCTATGTCTCGACCATTCCCAAAAAACT
CGAGCATCCATGCGAAAACTGCAAGGCTCCCTATGGTTACCAAAATCACA
TGCCACTCAACAATAACACCGAAAGCTTCTCTAACGAGGTGAAGAATGCC
ACAGTGTCGGGCAACTTGGATGCTCCCGAAGGAGGTTTCGATGCCATCAT
GCAGGCCATTGCCTGCCGATCGCAGATCGGTTGGCGGGAACAGGCTCGTC
GGCTGTTGGTCTTCTCGACGGACGCAGGCTTCCATTATGCTGGCGATGGC
AAATTGGGCGGTGTGATTGCTCCAAACGATGGCGAGTGTCACTTGAGTCC
CAAGGGCGAGTACACGCATTCGACGCTGCAGGATTATCCCAGTATTTCGC
AGATCAACCAGAAGGTCAAGGACAATGCCATCAATATTATCTTCGCCGTC
ACTGCCAGTCAGCTGTCTGTCTACGAAAAGTTGGTGGAGCACATCCAGGG
CTCTTCGGCGGCCAAGCTCGATAACGATTCATCCAATGTGGTTGAATTGG
TCAAGGAAGAATATCGCAAAATCTCCTCTTCGGTGGAGATGAAGGACAAC
GCCACTGGAGATGTGAAGATCACCTATTTCTCGTCATGCCTGAGCAACGG
ACCCGAAGTGCAGACCTCTAAGTGCGACAATCTGAAGGAGGGCCAGCAGG
TGAGCTTCACAGCTCAGATTCAGTTGCTCAAGTGTCCCGAGGATCCGCGC
GACTGGACACAGACGATCCACATCTCGCCCGTCGGCATCAACGAGGTCAT
GCAAATCCAGCTGACCATGCTCTGCTCGTGTCCCTGCGAGAATCCCGGTT
CAATTGGATATCAGGTGCAGGCGAACAGCTGCAGCGGCCACGGCACCTCA
ATGTGCGGCATCTGCAATTGCGATGATAGCTATTTCGGCAACAAATGCGA
GTGCTCGGCAACGGATCTAACATCGAAATTCGCGAACGACACTAGCTGTC
GAGCGGATAGCACATCGACGACGGACTGCTCTGGTCGGGGCCATTGCGTT
TGCGGCGCCTGCGAATGCCACAAGCGACCAAATCCCATTGAGATCATATC
CGGTAAACACTGCGAGTGCGACAACTTCAGCTGCGAACGGAACAGGAACC
AGTTGTGCTCGGGTCCCGATCACGGTACATGCGAGTGCGGCCGTTGCAAA
TGCAAGCCAGGCTGGACGGGCTCCAATTGCGGCTGCCAGGAGTCCAACGA
TACATGTATGCCACCTGGAGGCGGCGAGATCTGCTCCGGTCATGGTACCT
GCGAATGCGGTGTCTGCAAGTGTACGGTTAACGATCAGGGACGCTTCTCG
GGCCGACATTGCGAGAAGTGTCCAACTTGCTCGGGCAGGTGCCAGGAGCT
GAAGGATTGTGTCCAGTGCCAGATGTACAAGACGGGCGAGCTGAAGAACG
GTGATGATTGCGCCAGGAACTGCACTCAATTTGTGCCCGTGGGCGTGGAA
AAGGTGGAGATCGATGAGACCAAGGACGAGCAGATGTGCAAATTCTTCGA
CGAGGACGACTGCAAGTTTATGTTCAAGTACAGCGAACAGGGTGAGCTGC
ATGTGTATGCCCAGGAGAATAAGGAGTGTCCGGCCAAGGTTTTCATGTTG
GGCATCGTTATGGGCGTAATTGCCGCCATTGTCCTGGTCGGTCTGGCCAT
TCTCCTGCTGTGGAAGCTGCTCACTACGATCCACGATCGGCGGGAGTTCG
CTCGCTTCGAGAAGGAGCGCATGAACGCCAAGTGGGATACGGGCGAGAAT
CCCATCTACAAGCAGGCCACGTCCACCTTCAAGAACCCCATGTATGCGGG
CAAATAGAAGCTTTCTAGACCAT

BS13064.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
mys-RD 2541 CG1560-PD 1..2541 17..2557 12705 100 Plus
mys-RC 2541 CG1560-PC 1..2541 17..2557 12705 100 Plus
mys-RA 2541 CG1560-PA 1..2541 17..2557 12705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
mys-RD 4397 CG1560-RD 554..3096 16..2558 12715 100 Plus
mys-RC 4187 CG1560-RC 344..2886 16..2558 12715 100 Plus
mys-RA 4042 CG1560-RA 199..2741 16..2558 12715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:17:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8067560..8068784 1268..2492 6125 100 Plus
X 23542271 X 8063957..8064464 16..523 2525 99.8 Plus
X 23542271 X 8067062..8067496 833..1267 2175 100 Plus
X 23542271 X 8064533..8064761 519..747 1145 100 Plus
X 23542271 X 8065448..8065532 748..832 425 100 Plus
X 23542271 X 8068869..8068936 2491..2558 340 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:17:18 has no hits.

BS13064.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:52 Download gff for BS13064.complete
Subject Subject Range Query Range Percent Splice Strand
mys-RA 198..2732 17..2551 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:39 Download gff for BS13064.complete
Subject Subject Range Query Range Percent Splice Strand
mys-RA 200..2734 17..2551 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:11 Download gff for BS13064.complete
Subject Subject Range Query Range Percent Splice Strand
mys-RA 198..2732 17..2551 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:10 Download gff for BS13064.complete
Subject Subject Range Query Range Percent Splice Strand
mys-RA 200..2734 17..2551 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:10 Download gff for BS13064.complete
Subject Subject Range Query Range Percent Splice Strand
X 8063958..8064459 17..518 100 -> Plus
X 8064533..8064761 519..747 100 -> Plus
X 8065448..8065532 748..832 100 -> Plus
X 8067062..8067496 833..1267 100 -> Plus
X 8067560..8068783 1268..2491 100 -> Plus
X 8068870..8068929 2492..2551 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:39 Download gff for BS13064.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7957991..7958492 17..518 100 -> Plus
arm_X 7958566..7958794 519..747 100 -> Plus
arm_X 7959481..7959565 748..832 100 -> Plus
arm_X 7961095..7961529 833..1267 100 -> Plus
arm_X 7961593..7962816 1268..2491 100 -> Plus
arm_X 7962903..7962962 2492..2551 100   Plus

BS13064.3prime Sequence

706 bp (696 high quality bases) assembled on 2006-10-13

> BS13064.3prime
ATGGTCTAGAAAGCTTCTATTTGCCCGCATACATGGGGTTCTTGAAGGTG
GACGTGGCCTGCTTGTAGATGGGATTCTCGCCCGTATCCCACTTGGCGTT
CATGCGCTCCTTCTCGAAGCGAGCGAACTCCCGCCGATCGTGGATCGTAG
TGAGCAGCTTCCACAGCAGGAGAATGGCCAGACCGACCAGGACAATGGCG
GCAATTACGCCCATAACGATGCCCAACATGAAAACCTTGGCCGGACACTC
CTTATTCTCCTGGGCATACACATGCAGCTCACCCTGTTCGCTGTACTTGA
ACATAAACTTGCAGTCGTCCTCGTCGAAGAATTTGCACATCTGCTCGTCC
TTGGTCTCATCGATCTCCACCTTTTCCACGCCCACGGGCACAAATTGAGT
GCAGTTCCTGGCGCAATCATCACCGTTCTTCAGCTCGCCCGTCTTGTACA
TCTGGCACTGGACACAATCCTTCAGCTCCTGGCACCTGCCCGAGCAAGTT
GGACACTTCTCGCAATGTCGGCCCGAGAAGCGTCCCTGATCGTTAACCGT
ACACTTGCAGACACCGCATTCGCAGGTACCATGACCGGAGCAGATCTCGC
CGCCTCCAGGTGGCATACATGTATCGTTGGACTCCTGGCAGCCGCAATTG
GAGCCCGTCCAGCCTGGCTTGCATTTGCAACGGCCGCACTCGCATGTAAC
GTGATC

BS13064.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1560-PA 2541 mys-RA 1852..2541 706..17 3425 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
mys-RD 4397 CG1560-RD 2406..3096 706..16 3440 99.9 Minus
mys-RC 4187 CG1560-RC 2196..2886 706..16 3440 99.9 Minus
mys-RB 4042 CG1560-RB 2051..2741 706..16 3440 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8068160..8068784 706..82 3110 99.8 Minus
X 23542271 X 8068869..8068936 83..16 340 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:49:49 has no hits.

BS13064.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:47 Download gff for BS13064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1560-PA 1852..2541 17..706 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:36:27 Download gff for BS13064.3prime
Subject Subject Range Query Range Percent Splice Strand
mys-RB 2051..2741 16..706 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:48 Download gff for BS13064.3prime
Subject Subject Range Query Range Percent Splice Strand
mys-RB 2051..2741 16..706 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:26:48 Download gff for BS13064.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8068160..8068783 83..706 99 -> Minus
X 8068870..8068936 16..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:36:27 Download gff for BS13064.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7962193..7962816 83..706 99 -> Minus
arm_X 7962903..7962969 16..82 100   Minus

BS13064.5prime Sequence

841 bp (773 high quality bases) assembled on 2006-10-13

> BS13064.5prime
GAAGTTATCAGTCGACATGATCCTCGAGAGAAACCGGAGGTGCCAGCTGG
CCCTCCTCATGATCGCAATACTGGCCGCCATCGCTGGACAAACGGATGCC
CAGAAGGCGGCCAAACTGACGGCAGTGAGCACATGTGCATCGAAGGAAAA
GTGTCACACCTGCATCCAGACAGAGGGTTGCGCCTGGTGCATGCAGCCGG
ACTTTAAGGGCCAGTCGCGGTGCTACCAAAACACCAGCTCACTGTGTCCG
GAGGAGTTCGCCTACAGTCCGATAACAGTTGAGCAGATTCTAGTGAACAA
CAAACTAACGAATCAATACAAAGCTGAACTGGCGGCTGGTGGCGGCGGCT
CCGCCATGTCCGGCAGCAGCTCAAGCTCCTACTCGTCGAGTTCGAGCTCG
TCGAGCTTCTACTCGCAGAGCTCCTCGGGATCCAGTTCCGCCAGCGGATA
CGAAGAGTACTCTGCCGGCGAAATTGTCCAAATCCAACCGCAGTCCATGC
GACTCGCATTGCGCGTCAATGAGAAACACAACATCAAGATTAGCTATTCC
CAGGCGGAGGGATATCCGGTGGATCTCTACTACTTGATGGATCTCTCCAA
ATCTATGGAGGACGACAAGGCCAAATTGTCTACGCTGGGCGACAAGTTGT
CCGAGACCATGAAACGCATCACCAACAATTTCCATCTTGGTTTCGGTTCG
TTTGTGGACAAGGTGCTCATGCCCTATGTCTCGACCATTCCCAAAAAACT
CGAGCATCCATGCGAAAACTGCAAGGCTCCCTATGGTTACAAAATCACAT
GCCACTCCAACATAACACCGAAAGCTTCTCTAACGAGGTGA

BS13064.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1560-PA 2541 mys-RA 1..826 17..841 4015 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
mys-RD 4397 CG1560-RD 554..1380 16..841 4065 99.6 Plus
mys-RC 4187 CG1560-RC 344..1170 16..841 4065 99.6 Plus
mys-RA 4042 CG1560-RA 199..1025 16..841 4065 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8063957..8064464 16..523 2525 99.8 Plus
X 23542271 X 8064533..8064761 519..747 1145 100 Plus
X 23542271 X 8065448..8065532 748..831 330 95.3 Plus
Blast to na_te.dros performed on 2015-02-11 18:57:31 has no hits.

BS13064.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:48 Download gff for BS13064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1560-PA 1..825 17..840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:00:36 Download gff for BS13064.5prime
Subject Subject Range Query Range Percent Splice Strand
mys-RA 196..1024 10..840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:37:36 Download gff for BS13064.5prime
Subject Subject Range Query Range Percent Splice Strand
mys-RA 196..1024 10..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:37:36 Download gff for BS13064.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8063954..8064459 10..518 99 -> Plus
X 8064533..8064761 519..747 100 -> Plus
X 8065448..8065539 748..837 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:00:36 Download gff for BS13064.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7957987..7958492 10..518 99 -> Plus
arm_X 7958566..7958794 519..747 100 -> Plus
arm_X 7959481..7959572 748..837 93   Plus

BS13064.pep Sequence

Translation from 16 to 2556

> BS13064.pep
MILERNRRCQLALLMIAILAAIAGQTDAQKAAKLTAVSTCASKEKCHTCI
QTEGCAWCMQPDFKGQSRCYQNTSSLCPEEFAYSPITVEQILVNNKLTNQ
YKAELAAGGGGSAMSGSSSSSYSSSSSSSSFYSQSSSGSSSASGYEEYSA
GEIVQIQPQSMRLALRVNEKHNIKISYSQAEGYPVDLYYLMDLSKSMEDD
KAKLSTLGDKLSETMKRITNNFHLGFGSFVDKVLMPYVSTIPKKLEHPCE
NCKAPYGYQNHMPLNNNTESFSNEVKNATVSGNLDAPEGGFDAIMQAIAC
RSQIGWREQARRLLVFSTDAGFHYAGDGKLGGVIAPNDGECHLSPKGEYT
HSTLQDYPSISQINQKVKDNAINIIFAVTASQLSVYEKLVEHIQGSSAAK
LDNDSSNVVELVKEEYRKISSSVEMKDNATGDVKITYFSSCLSNGPEVQT
SKCDNLKEGQQVSFTAQIQLLKCPEDPRDWTQTIHISPVGINEVMQIQLT
MLCSCPCENPGSIGYQVQANSCSGHGTSMCGICNCDDSYFGNKCECSATD
LTSKFANDTSCRADSTSTTDCSGRGHCVCGACECHKRPNPIEIISGKHCE
CDNFSCERNRNQLCSGPDHGTCECGRCKCKPGWTGSNCGCQESNDTCMPP
GGGEICSGHGTCECGVCKCTVNDQGRFSGRHCEKCPTCSGRCQELKDCVQ
CQMYKTGELKNGDDCARNCTQFVPVGVEKVEIDETKDEQMCKFFDEDDCK
FMFKYSEQGELHVYAQENKECPAKVFMLGIVMGVIAAIVLVGLAILLLWK
LLTTIHDRREFARFEKERMNAKWDTGENPIYKQATSTFKNPMYAGK*

BS13064.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
mys-PD 846 CG1560-PD 1..846 1..846 4573 100 Plus
mys-PC 846 CG1560-PC 1..846 1..846 4573 100 Plus
mys-PA 846 CG1560-PA 1..846 1..846 4573 100 Plus
mys-PB 846 CG1560-PB 1..846 1..846 4472 98 Plus
Itgbetanu-PB 799 CG1762-PB 33..785 40..841 1030 31 Plus