Clone Sequence Records
BS13064.complete Sequence
2573 bp assembled on 2009-12-07
GenBank Submission: KX806112
> BS13064.complete
GAAGTTATCAGTCGACATGATCCTCGAGAGAAACCGGAGGTGCCAGCTGG
CCCTCCTCATGATCGCAATACTGGCCGCCATCGCTGGACAAACGGATGCC
CAGAAGGCGGCCAAACTGACGGCAGTGAGCACATGTGCATCGAAGGAAAA
GTGTCACACCTGCATCCAGACAGAGGGTTGCGCCTGGTGCATGCAGCCGG
ACTTTAAGGGCCAGTCGCGGTGCTACCAAAACACCAGCTCACTGTGTCCG
GAGGAGTTCGCCTACAGTCCGATAACAGTTGAGCAGATTCTAGTGAACAA
CAAACTAACGAATCAATACAAAGCTGAACTGGCGGCTGGTGGCGGCGGCT
CCGCCATGTCCGGCAGCAGCTCAAGCTCCTACTCGTCGAGTTCGAGCTCG
TCGAGCTTCTACTCGCAGAGCTCCTCGGGATCCAGTTCCGCCAGCGGATA
CGAAGAGTACTCTGCCGGCGAAATTGTCCAAATCCAACCGCAGTCCATGC
GACTCGCATTGCGCGTCAATGAGAAACACAACATCAAGATTAGCTATTCC
CAGGCGGAGGGATATCCGGTGGATCTCTACTACTTGATGGATCTCTCCAA
ATCTATGGAGGACGACAAGGCCAAATTGTCTACGCTGGGCGACAAGTTGT
CCGAGACCATGAAACGCATCACCAACAATTTCCATCTTGGTTTCGGTTCG
TTTGTGGACAAGGTGCTCATGCCCTATGTCTCGACCATTCCCAAAAAACT
CGAGCATCCATGCGAAAACTGCAAGGCTCCCTATGGTTACCAAAATCACA
TGCCACTCAACAATAACACCGAAAGCTTCTCTAACGAGGTGAAGAATGCC
ACAGTGTCGGGCAACTTGGATGCTCCCGAAGGAGGTTTCGATGCCATCAT
GCAGGCCATTGCCTGCCGATCGCAGATCGGTTGGCGGGAACAGGCTCGTC
GGCTGTTGGTCTTCTCGACGGACGCAGGCTTCCATTATGCTGGCGATGGC
AAATTGGGCGGTGTGATTGCTCCAAACGATGGCGAGTGTCACTTGAGTCC
CAAGGGCGAGTACACGCATTCGACGCTGCAGGATTATCCCAGTATTTCGC
AGATCAACCAGAAGGTCAAGGACAATGCCATCAATATTATCTTCGCCGTC
ACTGCCAGTCAGCTGTCTGTCTACGAAAAGTTGGTGGAGCACATCCAGGG
CTCTTCGGCGGCCAAGCTCGATAACGATTCATCCAATGTGGTTGAATTGG
TCAAGGAAGAATATCGCAAAATCTCCTCTTCGGTGGAGATGAAGGACAAC
GCCACTGGAGATGTGAAGATCACCTATTTCTCGTCATGCCTGAGCAACGG
ACCCGAAGTGCAGACCTCTAAGTGCGACAATCTGAAGGAGGGCCAGCAGG
TGAGCTTCACAGCTCAGATTCAGTTGCTCAAGTGTCCCGAGGATCCGCGC
GACTGGACACAGACGATCCACATCTCGCCCGTCGGCATCAACGAGGTCAT
GCAAATCCAGCTGACCATGCTCTGCTCGTGTCCCTGCGAGAATCCCGGTT
CAATTGGATATCAGGTGCAGGCGAACAGCTGCAGCGGCCACGGCACCTCA
ATGTGCGGCATCTGCAATTGCGATGATAGCTATTTCGGCAACAAATGCGA
GTGCTCGGCAACGGATCTAACATCGAAATTCGCGAACGACACTAGCTGTC
GAGCGGATAGCACATCGACGACGGACTGCTCTGGTCGGGGCCATTGCGTT
TGCGGCGCCTGCGAATGCCACAAGCGACCAAATCCCATTGAGATCATATC
CGGTAAACACTGCGAGTGCGACAACTTCAGCTGCGAACGGAACAGGAACC
AGTTGTGCTCGGGTCCCGATCACGGTACATGCGAGTGCGGCCGTTGCAAA
TGCAAGCCAGGCTGGACGGGCTCCAATTGCGGCTGCCAGGAGTCCAACGA
TACATGTATGCCACCTGGAGGCGGCGAGATCTGCTCCGGTCATGGTACCT
GCGAATGCGGTGTCTGCAAGTGTACGGTTAACGATCAGGGACGCTTCTCG
GGCCGACATTGCGAGAAGTGTCCAACTTGCTCGGGCAGGTGCCAGGAGCT
GAAGGATTGTGTCCAGTGCCAGATGTACAAGACGGGCGAGCTGAAGAACG
GTGATGATTGCGCCAGGAACTGCACTCAATTTGTGCCCGTGGGCGTGGAA
AAGGTGGAGATCGATGAGACCAAGGACGAGCAGATGTGCAAATTCTTCGA
CGAGGACGACTGCAAGTTTATGTTCAAGTACAGCGAACAGGGTGAGCTGC
ATGTGTATGCCCAGGAGAATAAGGAGTGTCCGGCCAAGGTTTTCATGTTG
GGCATCGTTATGGGCGTAATTGCCGCCATTGTCCTGGTCGGTCTGGCCAT
TCTCCTGCTGTGGAAGCTGCTCACTACGATCCACGATCGGCGGGAGTTCG
CTCGCTTCGAGAAGGAGCGCATGAACGCCAAGTGGGATACGGGCGAGAAT
CCCATCTACAAGCAGGCCACGTCCACCTTCAAGAACCCCATGTATGCGGG
CAAATAGAAGCTTTCTAGACCAT
BS13064.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:17:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mys-RD | 2541 | CG1560-PD | 1..2541 | 17..2557 | 12705 | 100 | Plus |
mys-RC | 2541 | CG1560-PC | 1..2541 | 17..2557 | 12705 | 100 | Plus |
mys-RA | 2541 | CG1560-PA | 1..2541 | 17..2557 | 12705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mys-RD | 4397 | CG1560-RD | 554..3096 | 16..2558 | 12715 | 100 | Plus |
mys-RC | 4187 | CG1560-RC | 344..2886 | 16..2558 | 12715 | 100 | Plus |
mys-RA | 4042 | CG1560-RA | 199..2741 | 16..2558 | 12715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:17:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8067560..8068784 | 1268..2492 | 6125 | 100 | Plus |
X | 23542271 | X | 8063957..8064464 | 16..523 | 2525 | 99.8 | Plus |
X | 23542271 | X | 8067062..8067496 | 833..1267 | 2175 | 100 | Plus |
X | 23542271 | X | 8064533..8064761 | 519..747 | 1145 | 100 | Plus |
X | 23542271 | X | 8065448..8065532 | 748..832 | 425 | 100 | Plus |
X | 23542271 | X | 8068869..8068936 | 2491..2558 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:17:18 has no hits.
BS13064.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:52 Download gff for
BS13064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mys-RA | 198..2732 | 17..2551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:39 Download gff for
BS13064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mys-RA | 200..2734 | 17..2551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:11 Download gff for
BS13064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mys-RA | 198..2732 | 17..2551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:10 Download gff for
BS13064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mys-RA | 200..2734 | 17..2551 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:10 Download gff for
BS13064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8063958..8064459 | 17..518 | 100 | -> | Plus |
X | 8064533..8064761 | 519..747 | 100 | -> | Plus |
X | 8065448..8065532 | 748..832 | 100 | -> | Plus |
X | 8067062..8067496 | 833..1267 | 100 | -> | Plus |
X | 8067560..8068783 | 1268..2491 | 100 | -> | Plus |
X | 8068870..8068929 | 2492..2551 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:39 Download gff for
BS13064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7957991..7958492 | 17..518 | 100 | -> | Plus |
arm_X | 7958566..7958794 | 519..747 | 100 | -> | Plus |
arm_X | 7959481..7959565 | 748..832 | 100 | -> | Plus |
arm_X | 7961095..7961529 | 833..1267 | 100 | -> | Plus |
arm_X | 7961593..7962816 | 1268..2491 | 100 | -> | Plus |
arm_X | 7962903..7962962 | 2492..2551 | 100 | | Plus |
BS13064.3prime Sequence
706 bp (696 high quality bases) assembled on 2006-10-13
> BS13064.3prime
ATGGTCTAGAAAGCTTCTATTTGCCCGCATACATGGGGTTCTTGAAGGTG
GACGTGGCCTGCTTGTAGATGGGATTCTCGCCCGTATCCCACTTGGCGTT
CATGCGCTCCTTCTCGAAGCGAGCGAACTCCCGCCGATCGTGGATCGTAG
TGAGCAGCTTCCACAGCAGGAGAATGGCCAGACCGACCAGGACAATGGCG
GCAATTACGCCCATAACGATGCCCAACATGAAAACCTTGGCCGGACACTC
CTTATTCTCCTGGGCATACACATGCAGCTCACCCTGTTCGCTGTACTTGA
ACATAAACTTGCAGTCGTCCTCGTCGAAGAATTTGCACATCTGCTCGTCC
TTGGTCTCATCGATCTCCACCTTTTCCACGCCCACGGGCACAAATTGAGT
GCAGTTCCTGGCGCAATCATCACCGTTCTTCAGCTCGCCCGTCTTGTACA
TCTGGCACTGGACACAATCCTTCAGCTCCTGGCACCTGCCCGAGCAAGTT
GGACACTTCTCGCAATGTCGGCCCGAGAAGCGTCCCTGATCGTTAACCGT
ACACTTGCAGACACCGCATTCGCAGGTACCATGACCGGAGCAGATCTCGC
CGCCTCCAGGTGGCATACATGTATCGTTGGACTCCTGGCAGCCGCAATTG
GAGCCCGTCCAGCCTGGCTTGCATTTGCAACGGCCGCACTCGCATGTAAC
GTGATC
BS13064.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:21:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1560-PA | 2541 | mys-RA | 1852..2541 | 706..17 | 3425 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:49:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mys-RD | 4397 | CG1560-RD | 2406..3096 | 706..16 | 3440 | 99.9 | Minus |
mys-RC | 4187 | CG1560-RC | 2196..2886 | 706..16 | 3440 | 99.9 | Minus |
mys-RB | 4042 | CG1560-RB | 2051..2741 | 706..16 | 3440 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:49:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8068160..8068784 | 706..82 | 3110 | 99.8 | Minus |
X | 23542271 | X | 8068869..8068936 | 83..16 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:49:49 has no hits.
BS13064.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:47 Download gff for
BS13064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1560-PA | 1852..2541 | 17..706 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:36:27 Download gff for
BS13064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mys-RB | 2051..2741 | 16..706 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:48 Download gff for
BS13064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mys-RB | 2051..2741 | 16..706 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:26:48 Download gff for
BS13064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8068160..8068783 | 83..706 | 99 | -> | Minus |
X | 8068870..8068936 | 16..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:36:27 Download gff for
BS13064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7962193..7962816 | 83..706 | 99 | -> | Minus |
arm_X | 7962903..7962969 | 16..82 | 100 | | Minus |
BS13064.5prime Sequence
841 bp (773 high quality bases) assembled on 2006-10-13
> BS13064.5prime
GAAGTTATCAGTCGACATGATCCTCGAGAGAAACCGGAGGTGCCAGCTGG
CCCTCCTCATGATCGCAATACTGGCCGCCATCGCTGGACAAACGGATGCC
CAGAAGGCGGCCAAACTGACGGCAGTGAGCACATGTGCATCGAAGGAAAA
GTGTCACACCTGCATCCAGACAGAGGGTTGCGCCTGGTGCATGCAGCCGG
ACTTTAAGGGCCAGTCGCGGTGCTACCAAAACACCAGCTCACTGTGTCCG
GAGGAGTTCGCCTACAGTCCGATAACAGTTGAGCAGATTCTAGTGAACAA
CAAACTAACGAATCAATACAAAGCTGAACTGGCGGCTGGTGGCGGCGGCT
CCGCCATGTCCGGCAGCAGCTCAAGCTCCTACTCGTCGAGTTCGAGCTCG
TCGAGCTTCTACTCGCAGAGCTCCTCGGGATCCAGTTCCGCCAGCGGATA
CGAAGAGTACTCTGCCGGCGAAATTGTCCAAATCCAACCGCAGTCCATGC
GACTCGCATTGCGCGTCAATGAGAAACACAACATCAAGATTAGCTATTCC
CAGGCGGAGGGATATCCGGTGGATCTCTACTACTTGATGGATCTCTCCAA
ATCTATGGAGGACGACAAGGCCAAATTGTCTACGCTGGGCGACAAGTTGT
CCGAGACCATGAAACGCATCACCAACAATTTCCATCTTGGTTTCGGTTCG
TTTGTGGACAAGGTGCTCATGCCCTATGTCTCGACCATTCCCAAAAAACT
CGAGCATCCATGCGAAAACTGCAAGGCTCCCTATGGTTACAAAATCACAT
GCCACTCCAACATAACACCGAAAGCTTCTCTAACGAGGTGA
BS13064.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:21:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1560-PA | 2541 | mys-RA | 1..826 | 17..841 | 4015 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mys-RD | 4397 | CG1560-RD | 554..1380 | 16..841 | 4065 | 99.6 | Plus |
mys-RC | 4187 | CG1560-RC | 344..1170 | 16..841 | 4065 | 99.6 | Plus |
mys-RA | 4042 | CG1560-RA | 199..1025 | 16..841 | 4065 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8063957..8064464 | 16..523 | 2525 | 99.8 | Plus |
X | 23542271 | X | 8064533..8064761 | 519..747 | 1145 | 100 | Plus |
X | 23542271 | X | 8065448..8065532 | 748..831 | 330 | 95.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:57:31 has no hits.
BS13064.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:48 Download gff for
BS13064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1560-PA | 1..825 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:00:36 Download gff for
BS13064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mys-RA | 196..1024 | 10..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:37:36 Download gff for
BS13064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mys-RA | 196..1024 | 10..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:37:36 Download gff for
BS13064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8063954..8064459 | 10..518 | 99 | -> | Plus |
X | 8064533..8064761 | 519..747 | 100 | -> | Plus |
X | 8065448..8065539 | 748..837 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:00:36 Download gff for
BS13064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7957987..7958492 | 10..518 | 99 | -> | Plus |
arm_X | 7958566..7958794 | 519..747 | 100 | -> | Plus |
arm_X | 7959481..7959572 | 748..837 | 93 | | Plus |
BS13064.pep Sequence
Translation from 16 to 2556
> BS13064.pep
MILERNRRCQLALLMIAILAAIAGQTDAQKAAKLTAVSTCASKEKCHTCI
QTEGCAWCMQPDFKGQSRCYQNTSSLCPEEFAYSPITVEQILVNNKLTNQ
YKAELAAGGGGSAMSGSSSSSYSSSSSSSSFYSQSSSGSSSASGYEEYSA
GEIVQIQPQSMRLALRVNEKHNIKISYSQAEGYPVDLYYLMDLSKSMEDD
KAKLSTLGDKLSETMKRITNNFHLGFGSFVDKVLMPYVSTIPKKLEHPCE
NCKAPYGYQNHMPLNNNTESFSNEVKNATVSGNLDAPEGGFDAIMQAIAC
RSQIGWREQARRLLVFSTDAGFHYAGDGKLGGVIAPNDGECHLSPKGEYT
HSTLQDYPSISQINQKVKDNAINIIFAVTASQLSVYEKLVEHIQGSSAAK
LDNDSSNVVELVKEEYRKISSSVEMKDNATGDVKITYFSSCLSNGPEVQT
SKCDNLKEGQQVSFTAQIQLLKCPEDPRDWTQTIHISPVGINEVMQIQLT
MLCSCPCENPGSIGYQVQANSCSGHGTSMCGICNCDDSYFGNKCECSATD
LTSKFANDTSCRADSTSTTDCSGRGHCVCGACECHKRPNPIEIISGKHCE
CDNFSCERNRNQLCSGPDHGTCECGRCKCKPGWTGSNCGCQESNDTCMPP
GGGEICSGHGTCECGVCKCTVNDQGRFSGRHCEKCPTCSGRCQELKDCVQ
CQMYKTGELKNGDDCARNCTQFVPVGVEKVEIDETKDEQMCKFFDEDDCK
FMFKYSEQGELHVYAQENKECPAKVFMLGIVMGVIAAIVLVGLAILLLWK
LLTTIHDRREFARFEKERMNAKWDTGENPIYKQATSTFKNPMYAGK*
BS13064.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:12:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mys-PD | 846 | CG1560-PD | 1..846 | 1..846 | 4573 | 100 | Plus |
mys-PC | 846 | CG1560-PC | 1..846 | 1..846 | 4573 | 100 | Plus |
mys-PA | 846 | CG1560-PA | 1..846 | 1..846 | 4573 | 100 | Plus |
mys-PB | 846 | CG1560-PB | 1..846 | 1..846 | 4472 | 98 | Plus |
Itgbetanu-PB | 799 | CG1762-PB | 33..785 | 40..841 | 1030 | 31 | Plus |