Clone Sequence Records
BS13066.complete Sequence
1922 bp assembled on 2009-12-07
GenBank Submission: KX802656
> BS13066.complete
GAAGTTATCAGTCGACATGTGGGCAAGAACAAACTACCTCTGGCGAAGTG
TGGGACGTCTGCGCCGCCAAGTATGCACGACGATCGTTTCACCAGCGCGA
ATATTTGCGGACCGAGAGAATCAGTTCGCCCATGGAATCCTGATGGATTC
TCTCAAACCGTATGCAATACTGCGTCCTCGGGACTCCGCCTGGCAGGATT
TGCCCGCATCTGAAGGCTTTATGCGGCCACAGCCAGATGCCAGTGCTGCC
GATCTCTATGCGGACTTTTTAGGCCTGGTGAGGCACTGTAATCGCATGGA
ACTGAAGATCAGCGATAGCCGCTACGAAGCCTTTACCCGCTGCTTCTGTG
AGCAGCTGCATCGCCTTACGGATGAACAACTTCTTGGATCGCTTAGTGCC
TTGGCCGAGCTGCCCGTACCGGAATCGCCCAAAGCCAAGAACTACATGGA
GATATGGAATACCCTGGACATCGAGTGCTGTCGCCGCATCGAGCGATGGT
CCAGTGAACAATTGCTACTCGTGAGCGATGCCTGGTATCGTCTTGGTCTG
GTCAGGATAGGCGAGTACGTGTGGCTGGCGCTGAAAAAGCTCGGCCGCAA
GCTGCGAAAGCTGCCGCCAGAACAGCTCGTTCACTCCATGTTCCTGTGCA
ATCTACTGCGCCGACCCGTCTTCGAGATGTTCGATTTCGAGTTGAATCTG
GCCCGCTGCGTGGATCAAATGACGCTGTCCGAATTGGGCGTAATGGCCAT
GGGCTTCTTTAAGACACAGACGCCTATCAGAAATCCGGAGCTGCTAACGC
AACTCTATCAGCGATTAGGCAGCGAGCTGGACACCGTGGAAGACATTGTC
CTGGTAGCGCTGCTCAAGGTGCTGCGGTACAGCAGCAAGCTGCCACAAGT
GGAGCCGCTAAAGAAGATGTTAAGCGCTCTAGAGTCGCAAGTGGATCGCG
TTTCCCTCCTCACGTGCCTGCACATGGCTCTTCTGGGCTGTGAACTGCAA
ACGTGCAATGATGCACTGGTGGAGCGCATACTGCTGAGATTCGAGCGTGA
GTTAGAGACTGCCCGCCTCAAGGATATGGAGCGAATTTGTCTGGTAATGG
CCCTTTTCAATATTACAACTAAGTCGGGAGTGGAACGCCGGTTGGCGGAG
AGATTGCCCGATTTGCTGCGCCAGCGTATAGAGGAGATACTGCGCCATCC
TCGTTGTTTCTCCAACTGCCTTCAGTTTCTCACAATGCGTGGTGTTTACG
ATCTTGAGCTTTTGGGCGTGGCACTGGAGCCGCGTTTCCTGAAGCATGCG
TACCCAAGCGGATTGCCCGGGCGTGAGTACTTCCATTTGGATGGGTTCGC
ACGCCTCCTGGGGCCGGAATACCAGGGAGCACTGGTTACCGAGAAGCAAC
GACAGCAGATGGGCCGCAATTACACGCAGTACATCCCCGATCGGGACGGA
CGCTTCAAGCTGAATAATACCGATCGTATTCTAGTGGAAATACGGGATGC
GATCACCATGATCCACCGTCCCGTGACCTTCAAGCACATCCTGCCGCAAT
ACGATCGATGCGATGTAGTGTTGTGCTACGACCGCCGGCAACGGAAGGCG
TTGTCCATAAATGGTGAGGCCTGTCAGGATTACAGCGGTGAGATTCTCAC
CCGGAAGCACTTACTGGGTGAGAGAAAGGCTGCGGATGACCAGCTGGTCA
CAGTGGTTATCGTTATTGCCGGCTGGAACAACGTAATCCGCGATAAGGAT
CGTTTCACCGGCCAAATGGATATGAAGCTAAGGCAGCTGCGGCAATTGGG
ACATCAGCCACTGGTGATCTATTGGCACGAGTGGCGGGAACTGGAGAACT
CAGCTGACCGCCAGGACTTTCTGAAACGCCGCCTTAGCCAAATTGCAAAA
ATTTAGAAGCTTTCTAGACCAT
BS13066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2124-RA | 1890 | CG2124-PA | 1..1890 | 17..1906 | 9450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2124-RA | 2782 | CG2124-RA | 127..2018 | 15..1906 | 9460 | 100 | Plus |
| CG1628-RC | 1499 | CG1628-RC | 1240..1330 | 1906..1816 | 455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10596248..10598049 | 15..1816 | 9010 | 100 | Plus |
| X | 23542271 | X | 10598315..10598405 | 1816..1906 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:56:33 has no hits.
BS13066.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:25 Download gff for
BS13066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-RA | 174..2063 | 17..1906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:51 Download gff for
BS13066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-RA | 129..2018 | 17..1906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:07 Download gff for
BS13066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-RA | 174..2063 | 17..1906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:16 Download gff for
BS13066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-RA | 129..2018 | 17..1906 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:16 Download gff for
BS13066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10596250..10598049 | 17..1816 | 100 | -> | Plus |
| X | 10598316..10598405 | 1817..1906 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:51 Download gff for
BS13066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10492349..10492438 | 1817..1906 | 100 | | Plus |
| arm_X | 10490283..10492082 | 17..1816 | 100 | -> | Plus |
BS13066.3prime Sequence
719 bp (716 high quality bases) assembled on 2006-10-13
> BS13066.3prime
ATGGTCTAGAAAGCTTCTAAATTTTTGCAATTTGGCTAAGGCGGCGTTTC
AGAAAGTCCTGGCGGTCAGCTGAGTTCTCCAGTTCCCGCCACTCGTGCCA
ATAGATCACCAGTGGCTGATGTCCCAATTGCCGCAGCTGCCTTAGCTTCA
TATCCATTTGGCCGGTGAAACGATCCTTATCGCGGATTACGTTGTTCCAG
CCGGCAATAACGATAACCACTGTGACCAGCTGGTCATCCGCAGCCTTTCT
CTCACCCAGTAAGTGCTTCCGGGTGAGAATCTCACCGCTGTAATCCTGAC
AGGCCTCACCATTTATGGACAACGCCTTCCGTTGCCGGCGGTCGTAGCAC
AACACTACATCGCATCGATCGTATTGCGGCAGGATGTGCTTGAAGGTCAC
GGGACGGTGGATCATGGTGATCGCATCCCGTATTTCCACTAGAATACGAT
CGGTATTATTCAGCTTGAAGCGTCCGTCCCGATCGGGGATGTACTGCGTG
TAATTGCGGCCCATCTGCTGTCGTTGCTTCTCGGTAACCAGTGCTCCCTG
GTATTCCGGCCCCAGGAGGCGTGCGAACCCATCCAAATGGAAATACTCAC
GCCCGGGCAATCCGCTTGGGTACGCATGCTTCAGGAAACGCGGCTCCAGT
GCCACGCCCAAAAGCTCAAGATCGTAAACACCACGCATTGTGAGAAACTG
AAGGCAGTTGGAGAAACAA
BS13066.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:21:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2124-PA | 1890 | CG2124-RA | 1188..1890 | 719..17 | 3490 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2124-RA | 2782 | CG2124-RA | 1316..2018 | 719..17 | 3500 | 99.9 | Minus |
| CG1628-RC | 1499 | CG1628-RC | 1240..1330 | 17..107 | 455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:40:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10597437..10598049 | 719..107 | 3050 | 99.8 | Minus |
| X | 23542271 | X | 10598315..10598405 | 107..17 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:40:08 has no hits.
BS13066.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:48 Download gff for
BS13066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-PA | 1190..1890 | 17..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:38:47 Download gff for
BS13066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-RA | 1318..2021 | 14..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:43:06 Download gff for
BS13066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-RA | 1318..2021 | 14..717 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:43:06 Download gff for
BS13066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10597439..10598049 | 107..717 | 99 | -> | Minus |
| X | 10598316..10598408 | 14..106 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:38:47 Download gff for
BS13066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10491472..10492082 | 107..717 | 99 | -> | Minus |
| arm_X | 10492349..10492441 | 14..106 | 98 | | Minus |
BS13066.5prime Sequence
823 bp (731 high quality bases) assembled on 2006-10-13
> BS13066.5prime
GAAGTTATCAGTCGACATGTGGGCAAGAACAAACTACCTCTGGCGAAGTG
TGGGACGTCTGCGCCGCCAAGTATGCACGACGATCGTTTCACCAGCGCGA
ATATTTGCGGACCGAGAGAATCAGTTCGCCCATGGAATCCTGATGGATTC
TCTCAAACCGTATGCAATACTGCGTCCTCGGGACTCCGCCTGGCAGGATT
TGCCCGCATCTGAAGGCTTTATGCGGCCACAGCCAGATGCCAGTGCTGCC
GATCTCTATGCGGACTTTTTAGGCCTGGTGAGGCACTGTAATCGCATGGA
ACTGAAGATCAGCGATAGCCGCTACGAAGCCTTTACCCGCTGCTTCTGTG
AGCAGCTGCATCGCCTTACGGATGAACAACTTCTTGGATCGCTTAGTGCC
TTGGCCGAGCTGCCCGTACCGGAATCGCCCAAAGCCAAGAACTACATGGA
GATATGGAATACCCTGGACATCGAGTGCTGTCGCCGCATCGAGCGATGGT
CCAGTGAACAATTGCTACTCGTGAGCGATGCCTGGTATCGTCTTGGTCTG
GTCAGGATAGGCGAGTACGTGTGGCTGGCGCTGAAAAAGCTCGGCCGCAA
GCTGCGAAAGCTGCCGCCAGAACAGCTCGTTCACTCCATGTTCCTGTGCA
ATCTACTGCGCCGACCCGTCTTCGAGATGTTCGATTTCGAGTTGAATCTG
GCCCGCTGCGTGGATCAAATGACGCTTGTCCGAATTGGGCGTAATGGCCA
TGGGCTTCTTTAAGACACAGACGCCTATCAGAAATCCGGAGCTGCTAACG
CAACTCTATCACCGATTAAGCAG
BS13066.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2124-PA | 1890 | CG2124-RA | 1..801 | 17..818 | 3945 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2124-RA | 2782 | CG2124-RA | 127..934 | 15..823 | 3990 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10596248..10597055 | 15..823 | 3965 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:57:36 has no hits.
BS13066.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:48 Download gff for
BS13066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-PA | 1..806 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:00:38 Download gff for
BS13066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-RA | 127..934 | 15..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:37:58 Download gff for
BS13066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2124-RA | 127..934 | 15..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:37:58 Download gff for
BS13066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10596248..10597055 | 15..823 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:00:38 Download gff for
BS13066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10490281..10491088 | 15..823 | 99 | | Plus |
BS13066.pep Sequence
Translation from 16 to 1905
> BS13066.pep
MWARTNYLWRSVGRLRRQVCTTIVSPARIFADRENQFAHGILMDSLKPYA
ILRPRDSAWQDLPASEGFMRPQPDASAADLYADFLGLVRHCNRMELKISD
SRYEAFTRCFCEQLHRLTDEQLLGSLSALAELPVPESPKAKNYMEIWNTL
DIECCRRIERWSSEQLLLVSDAWYRLGLVRIGEYVWLALKKLGRKLRKLP
PEQLVHSMFLCNLLRRPVFEMFDFELNLARCVDQMTLSELGVMAMGFFKT
QTPIRNPELLTQLYQRLGSELDTVEDIVLVALLKVLRYSSKLPQVEPLKK
MLSALESQVDRVSLLTCLHMALLGCELQTCNDALVERILLRFERELETAR
LKDMERICLVMALFNITTKSGVERRLAERLPDLLRQRIEEILRHPRCFSN
CLQFLTMRGVYDLELLGVALEPRFLKHAYPSGLPGREYFHLDGFARLLGP
EYQGALVTEKQRQQMGRNYTQYIPDRDGRFKLNNTDRILVEIRDAITMIH
RPVTFKHILPQYDRCDVVLCYDRRQRKALSINGEACQDYSGEILTRKHLL
GERKAADDQLVTVVIVIAGWNNVIRDKDRFTGQMDMKLRQLRQLGHQPLV
IYWHEWRELENSADRQDFLKRRLSQIAKI*
BS13066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:08:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2124-PA | 629 | CG2124-PA | 1..629 | 1..629 | 3280 | 100 | Plus |
