Clone Sequence Records
BS13067.3prime Sequence
773 bp (694 high quality bases) assembled on 2006-10-13
> BS13067.3prime
ATGGTCTAGAAAGCTTCTATCGCCTGGCATCATCTATTCCTTCGGAAATG
GGACGAATCATCCAACGAACCCGTTTCAGCGAATTCTGCCCTGAAAAGGT
GTCCCACCAGATCCCAGTTTCTCCAGGTTGGTTCTGGGTGGTATATTCGC
CGAATAAGTTGCTCTTTGCGCAGTTGTTAAACCATCCAGCTCCCTTGTGT
CTCAGGGCGCAATTGCACTCCAGGCAGTTGTCATTATCCTGATCCACAGT
GCTAAACTTAGCTCCAGCATGATAGGACAATGAATCTCCAGCTGAAGGAG
TCAAATTATCCTGGAATTTGCCCAGCAAGACGAGTGGATATAGTTCCTTT
TCGCTGCCAATGGCAAACAACGAATATCCCGCATACGCCACGTTGCCCGA
GAAGTCCTCCATCACAATCCGCAGTTCGTGCAAGGCCGATGAAGTGAGGG
CATGCAGTTTGTTGAGACCAATAAAGAAGTCCCCAGCCAAATTGCCAAAG
CCATCGCGATAATCCAGCCAGCCGCGTTCGAAGTTCACATCATCGGAGGT
GCGGCTCAAAATAACAGTCCAATCCTCATCGCAGGATACGTAGAAGGATT
CCGATTCGGGTGTGAGCTGTACTTTTAGAATTCCGTGGTTAGAAAGGAAG
GAATAGGAGCAACTACTAGGCAACTGCCGTGTAGCTGTTGGTCCATTTAA
TCCACTTGGACCGTAAAAGATTGGCTGCTGACCTGGTGTCGACCTCAATC
CCTTACCCTGGATCAAACGGCTT
BS13067.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10359-PA | 1383 | CG10359-RA | 627..1383 | 773..17 | 3760 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10359-RE | 1762 | CG10359-RE | 835..1591 | 773..17 | 3770 | 99.9 | Minus |
CG10359-RG | 1684 | CG10359-RG | 757..1513 | 773..17 | 3770 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3614317..3615073 | 773..17 | 3770 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:45:26 has no hits.
BS13067.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:49 Download gff for
BS13067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-PA | 627..1383 | 17..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:12 Download gff for
BS13067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-RG | 757..1523 | 5..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:58 Download gff for
BS13067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-RG | 757..1523 | 5..773 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:58 Download gff for
BS13067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3614317..3615083 | 5..773 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:12 Download gff for
BS13067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3614317..3615083 | 5..773 | 99 | | Minus |
BS13067.5prime Sequence
748 bp (702 high quality bases) assembled on 2006-10-13
> BS13067.5prime
GAAGTTATCAGTCGACATGATGAGGCCCCAATTAGCGGCCATAGCCACTG
TCATGGTGCTGGCTGCGATCTGCGGTTTTGGCACTGGTTCCGTGCTGGAA
GTACCCGGAGTCACCCAGGCACCACCACTCCCACCTCGTAACCTCCGAAA
CAACCAAACGCGGTCGCGCATTCCCAACAACTTCCGAAGCATTGCGACCC
CACCAATTGCTCCCAGATGCGACTACAAGGAGCTGATGACCAATCTGCAC
GATCGCGTTGGCATCTTGGTGACCTTGGACGAGGACCAGCGCCACCGGCT
GGAAGTCATCGATAAGAAATTGGATCAGCTGGTGGAAAGCAGTTCGGCCC
GCATGGAATCGATGAAGGCCCAGCAATTGGACTTCCTGCACAGACTGGAC
AGTTTTGAGCACATCCAGCGGCTTTCGAGGAACACTCTAGATGAGCTTAA
AGATATCTCGCGCACTGTTCGTGACGTTTCCCAGGAACAGTATCCCAGCT
CGGGAATAGGTACATTTAATGAATCCAACTTGAATTTATCAAGTCGTCTG
GATGCCTTGGCCACGCTTTTGGCTTCTACTGCTCTCAGTGTCAGATCTGT
GCAGGTTGAAGTGGCCAATCTTTCACGGGCCATTAGGCGCCAAAGCCGTT
TGATCCAGGGTAAGGGATTGAGGTCGACACCAGGTCAGCAGCCCATCTTC
TACGGTCCAAGTGGATTAAATGGACCAACAGCTACACGGCAGTTGCCT
BS13067.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10359-PA | 1383 | CG10359-RA | 1..732 | 17..748 | 3635 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10359-RG | 1684 | CG10359-RG | 128..862 | 14..748 | 3660 | 99.9 | Plus |
CG10359-RE | 1762 | CG10359-RE | 128..566 | 14..452 | 2195 | 100 | Plus |
CG10359-RE | 1762 | CG10359-RE | 644..940 | 452..748 | 1470 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3614068..3614254 | 451..637 | 935 | 100 | Plus |
3L | 28110227 | 3L | 3612319..3612492 | 14..187 | 870 | 100 | Plus |
3L | 28110227 | 3L | 3613749..3613882 | 319..452 | 670 | 100 | Plus |
3L | 28110227 | 3L | 3613075..3613205 | 188..318 | 655 | 100 | Plus |
3L | 28110227 | 3L | 3614307..3614422 | 633..748 | 565 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:55:59 has no hits.
BS13067.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:50 Download gff for
BS13067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-PA | 1..732 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:14 Download gff for
BS13067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-RG | 125..862 | 10..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:52:46 Download gff for
BS13067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-RG | 125..862 | 10..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:52:46 Download gff for
BS13067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3613075..3613205 | 188..318 | 100 | -> | Plus |
3L | 3613749..3613882 | 319..452 | 100 | -> | Plus |
3L | 3614070..3614253 | 453..636 | 100 | -> | Plus |
3L | 3614311..3614422 | 637..748 | 99 | | Plus |
3L | 3612316..3612492 | 10..187 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:14 Download gff for
BS13067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3612316..3612492 | 10..187 | 99 | -> | Plus |
arm_3L | 3613075..3613205 | 188..318 | 100 | -> | Plus |
arm_3L | 3613749..3613882 | 319..452 | 100 | -> | Plus |
arm_3L | 3614070..3614253 | 453..636 | 100 | -> | Plus |
arm_3L | 3614311..3614422 | 637..748 | 99 | | Plus |
BS13067.complete Sequence
1415 bp assembled on 2006-11-01
> BS13067.complete
GAAGTTATCAGTCGACATGATGAGGCCCCAATTAGCGGCCATAGCCACTG
TCATGGTGCTGGCTGCGATCTGCGGTTTTGGCACTGGTTCCGTGCTGGAA
GTACCCGGAGTCACCCAGGCACCACCACTCCCACCTCGTAACCTCCGAAA
CAACCAAACGCGGTCGCGCATTCCCAACAACTTCCGAAGCATTGCGACCC
CACCAATTGCTCCCAGATGCGACTACAAGGAGCTGATGACCAATCTGCAC
GATCGCGTTGGCATCTTGGTGACCTTGGACGAGGACCAGCGCCACCGGCT
GGAAGTCATCGATAAGAAATTGGATCAGCTGGTGGAAAGCAGTTCGGCCC
GCATGGAATCGATGAAGGCCCAGCAATTGGACTTCCTGCACAGACTGGAC
AGTTTTGAGCACATCCAGCGGCTTTCGAGGAACACTCTAGATGAGCTTAA
AGATATCTCGCGCACTGTTCGTGACGTTTCCCAGGAACAGTATCCCAGCT
CGGGAATAGGTACATTTAATGAATCCAACTTGAATTTATCAAGTCGTCTG
GATGCCTTGGCCACGCTTTTGGCTTCTACTGCTCTCAGTGTCAGATCTGT
GCAGGTTGAAGTGGCCAATCTTTCACGGGCCATTAGGCGCCAAAGCCGTT
TGATCCAGGGTAAGGGATTGAGGTCGACACCAGGTCAGCAGCCAATCTTC
TACGGTCCAAGTGGATTAAATGGACCAACAGCTACACGGCAGTTGCCTAG
TAGTTGCTCCTATTCCTTCCTTTCTAACCACGGAATTCTAAAAGTACAGC
TCACACCCGAATCGGAATCCTTCTACGTATCCTGCGATGAGGATTGGACT
GTTATTTTGAGCCGCACCTCCGATGATGTGAACTTCGAACGCGGCTGGCT
GGATTATCGCGATGGCTTTGGCAATTTGGCTGGGGACTTCTTTATTGGTC
TCAACAAACTGCATGCCCTCACTTCATCGGCCTTGCACGAACTGCGGATT
GTGATGGAGGACTTCTCGGGCAACGTGGCGTATGCGGGATATTCGTTGTT
TGCCATTGGCAGCGAAAAGGAACTATATCCACTCGTCTTGCTGGGCAAAT
TCCAGGATAATTTGACTCCTTCAGCTGGAGATTCATTGTCCTATCATGCT
GGAGCTAAGTTTAGCACTGTGGATCAGGATAATGACAACTGCCTGGAGTG
CAATTGCGCCCTGAGACACAAGGGAGCTGGATGGTTTAACAACTGCGCAA
AGAGCAACTTATTCGGCGAATATACCACCCAGAACCAACCTGGAGAAACT
GGGATCTGGTGGGACACCTTTTCAGGGCAGAATTCGCTGAAACGGGTTCG
TTGGATGATTCGTCCCATTTCCGAAGGAATAGATGATGCCAGGCGATAGA
AGCTTTCTAGACCAT
BS13067.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10359-RG | 1380 | CG10359-PG | 1..1380 | 20..1399 | 6900 | 100 | Plus |
CG10359-RE | 1458 | CG10359-PE | 511..1458 | 452..1399 | 4740 | 100 | Plus |
CG10359-RE | 1458 | CG10359-PE | 1..433 | 20..452 | 2165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10359-RG | 1684 | CG10359-RG | 128..1513 | 14..1399 | 6930 | 100 | Plus |
CG10359-RE | 1762 | CG10359-RE | 644..1591 | 452..1399 | 4740 | 100 | Plus |
CG10359-RE | 1762 | CG10359-RE | 128..566 | 14..452 | 2195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3614307..3615073 | 633..1399 | 3835 | 100 | Plus |
3L | 28110227 | 3L | 3614068..3614254 | 451..637 | 935 | 100 | Plus |
3L | 28110227 | 3L | 3612319..3612492 | 14..187 | 870 | 100 | Plus |
3L | 28110227 | 3L | 3613749..3613882 | 319..452 | 670 | 100 | Plus |
3L | 28110227 | 3L | 3613075..3613205 | 188..318 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:09:19 has no hits.
BS13067.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:28 Download gff for
BS13067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-RG | 1..1380 | 20..1399 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:26 Download gff for
BS13067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-RG | 123..1521 | 10..1411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:53 Download gff for
BS13067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-RG | 131..1513 | 17..1399 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:29 Download gff for
BS13067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-RG | 123..1521 | 10..1411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:09 Download gff for
BS13067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10359-RG | 131..1513 | 17..1399 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:09 Download gff for
BS13067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3612322..3612492 | 17..187 | 100 | -> | Plus |
3L | 3613075..3613205 | 188..318 | 100 | -> | Plus |
3L | 3613749..3613882 | 319..452 | 100 | -> | Plus |
3L | 3614070..3614253 | 453..636 | 100 | -> | Plus |
3L | 3614311..3615073 | 637..1399 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:53 Download gff for
BS13067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3612322..3612492 | 17..187 | 100 | -> | Plus |
arm_3L | 3613075..3613205 | 188..318 | 100 | -> | Plus |
arm_3L | 3613749..3613882 | 319..452 | 100 | -> | Plus |
arm_3L | 3614070..3614253 | 453..636 | 100 | -> | Plus |
arm_3L | 3614311..3615073 | 637..1399 | 100 | | Plus |
BS13067.pep Sequence
Translation from 16 to 1398
> BS13067.pep
MMRPQLAAIATVMVLAAICGFGTGSVLEVPGVTQAPPLPPRNLRNNQTRS
RIPNNFRSIATPPIAPRCDYKELMTNLHDRVGILVTLDEDQRHRLEVIDK
KLDQLVESSSARMESMKAQQLDFLHRLDSFEHIQRLSRNTLDELKDISRT
VRDVSQEQYPSSGIGTFNESNLNLSSRLDALATLLASTALSVRSVQVEVA
NLSRAIRRQSRLIQGKGLRSTPGQQPIFYGPSGLNGPTATRQLPSSCSYS
FLSNHGILKVQLTPESESFYVSCDEDWTVILSRTSDDVNFERGWLDYRDG
FGNLAGDFFIGLNKLHALTSSALHELRIVMEDFSGNVAYAGYSLFAIGSE
KELYPLVLLGKFQDNLTPSAGDSLSYHAGAKFSTVDQDNDNCLECNCALR
HKGAGWFNNCAKSNLFGEYTTQNQPGETGIWWDTFSGQNSLKRVRWMIRP
ISEGIDDARR*
BS13067.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10359-PG | 459 | CG10359-PG | 1..459 | 2..460 | 2385 | 100 | Plus |
CG10359-PE | 485 | CG10359-PE | 1..485 | 2..460 | 2348 | 94.6 | Plus |
CG1791-PC | 333 | CG1791-PC | 54..332 | 185..453 | 413 | 38.9 | Plus |
CG1791-PA | 334 | CG1791-PA | 54..333 | 185..453 | 412 | 38.8 | Plus |
CG9500-PA | 272 | CG9500-PA | 33..266 | 219..450 | 396 | 40.9 | Plus |