Clone Sequence Records
BS13068.3prime Sequence
738 bp (716 high quality bases) assembled on 2006-10-13
> BS13068.3prime
ATGGTCTAGAAAGCTTTTACTTAGTTTTGCGACTGCGCCGCGGCTGGGAT
TCGTCCAGAGGCGGAAGGCCAAGGAGTTGGCGTCGTTCCCGCTTGCCACG
CAGTATGGCTTCCTTGAAGAGGTTGCAATAGAGCTCCACTGCGGCCGGCG
AGTCATCGTTGCCGGGCACCGGATAGGTGATCAGGTTGGGATTGCAATTG
CTGTCCACTATGCCAATGGTTGGTATGGCCATTTTGGCGGCGTCCCGAAC
CGCCGTGTGCTGAGCCATAACGTTGTTTTGAGTGTTGAGGAAAATGCAAA
GATCGGGCAGCCTGGTGACCGCATCGAATTGCACATTGGCATTGGTAAAG
ATGCCGCCGCGCCAAAAGCGAGTGTGCGAGAATTCACCGGCCTCCTGGGC
CTTTCGCTCCACGAGATGTGAGTTCATGGCGTTGCGGTTGAAGAACAGAA
TGATGCCATCTCGGAAGGCAATGTGTGCGGCAAAGTTGAGGGCATCGCGC
AGATGTGATGCCGTCTTGTCCAGATCGAAGATCAGATGACCTAATCGACT
GCCGAACAAGTACGGACGCATTCGGTCGTCCAGGGAGCCCTCCTTGTGGC
CATAGTGCACTCGGGCATTGAAGAGGTCGCGCACGGTGAACAGGTTGTGC
ACTTGGAAGTAGTCCGGATGCTTCAGAATCCGCTGTTCCACCAGGGCGAT
GTCCTCCGGTTCCGTTTCCACCGATTGCTCCGGCTGTG
BS13068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2937-PA | 795 | mRpS2-RA | 74..795 | 738..17 | 3585 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS2-RA | 924 | CG2937-RA | 130..855 | 738..13 | 3600 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4849508..4850233 | 13..738 | 3600 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:14:59 has no hits.
BS13068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:50 Download gff for
BS13068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2937-PA | 74..795 | 17..738 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:41 Download gff for
BS13068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-RA | 130..855 | 13..738 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:31:38 Download gff for
BS13068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-RA | 130..855 | 13..738 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:31:38 Download gff for
BS13068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4849508..4850233 | 13..738 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:41 Download gff for
BS13068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4849508..4850233 | 13..738 | 99 | | Plus |
BS13068.5prime Sequence
744 bp (685 high quality bases) assembled on 2006-10-13
> BS13068.5prime
GAAGTTATCAGTCGACATGTTGAGAAAATCGTTTGCCAACCTACCCCGCT
TTGGTCAGATGTGCGGTCTGCCACGACGCCTGCAGAGCACACAGCCGGAG
CAATCGGTGGAAACGGAACCGGAGGACATCGCCCTGGTGGAACAGCGGAT
TCTGAAGCATCCGGACTACTTCCAAGTGCACAACCTGTTCACCGTGCGCG
ACCTCTTCAATGCCCGAGTGCACTATGGCCACAAGGAGGGCTCCCTGGAC
GACCGAATGCGTCCGTACTTGTTCGGCAGTCGATTAGGTCATCTGATCTT
CGATCTGGACAAGACGGCATCACATCTGCGCGATGCCCTCAACTTTGCCG
CACACATTGCCTTCCGAGATGGCATCATTCTGTTCTTCAACCGCAACGCC
ATGAACTCACATCTCGTGGAGCGAAAGGCCCAGGAGGCCGGTGAATTCTC
GCACACTCGCTTTTGGCGCGGCGGCATCTTTACCAATGCCAATGTGCAAT
TCGATGCGGTCACCAGGCTGCCCGATCTTTGCATTTTCCTCAACACTCAA
AACAACGTTATGGCTCAGCACACGGCGGTTCGGGACGCCGCCAAAATGGC
CATACCAACCATTGGCATAGTGGACAGCAATTGCAATCCCAACCTGATCA
CCTATCCGGTGCCCGGCAACGATGACTCGCCGGCCGCAGTGGAGCTCTAT
TGCAACCTCTTCAAGGAAGCCCTACTGCGTGGCAAGCGGGAACG
BS13068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2937-PA | 795 | mRpS2-RA | 1..728 | 17..744 | 3590 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS2-RA | 924 | CG2937-RA | 57..784 | 17..744 | 3610 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4849579..4850281 | 744..42 | 3485 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:29:43 has no hits.
BS13068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:50 Download gff for
BS13068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2937-PA | 1..728 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:26:23 Download gff for
BS13068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-RA | 57..784 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:50 Download gff for
BS13068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-RA | 57..784 | 17..744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:50 Download gff for
BS13068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4849579..4850281 | 42..744 | 99 | <- | Minus |
| 2L | 4850339..4850363 | 17..41 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:26:23 Download gff for
BS13068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4849579..4850281 | 42..744 | 99 | <- | Minus |
| arm_2L | 4850339..4850363 | 17..41 | 100 | | Minus |
BS13068.complete Sequence
827 bp assembled on 2006-11-01
GenBank Submission: FJ637373
> BS13068.complete
GAAGTTATCAGTCGACATGTTGAGAAAATCGTTTGCCAACCTACCCCGCT
TTGGTCAGATGTGCGGTCTGCCACGACGCCTGCAGAGCACACAGCCGGAG
CAATCGGTGGAAACGGAACCGGAGGACATCGCCCTGGTGGAACAGCGGAT
TCTGAAGCATCCGGACTACTTCCAAGTGCACAACCTGTTCACCGTGCGCG
ACCTCTTCAATGCCCGAGTGCACTATGGCCACAAGGAGGGCTCCCTGGAC
GACCGAATGCGTCCGTACTTGTTCGGCAGTCGATTAGGTCATCTGATCTT
CGATCTGGACAAGACGGCATCACATCTGCGCGATGCCCTCAACTTTGCCG
CACACATTGCCTTCCGAGATGGCATCATTCTGTTCTTCAACCGCAACGCC
ATGAACTCACATCTCGTGGAGCGAAAGGCCCAGGAGGCCGGTGAATTCTC
GCACACTCGCTTTTGGCGCGGCGGCATCTTTACCAATGCCAATGTGCAAT
TCGATGCGGTCACCAGGCTGCCCGATCTTTGCATTTTCCTCAACACTCAA
AACAACGTTATGGCTCAGCACACGGCGGTTCGGGACGCCGCCAAAATGGC
CATACCAACCATTGGCATAGTGGACAGCAATTGCAATCCCAACCTGATCA
CCTATCCGGTGCCCGGCAACGATGACTCGCCGGCCGCAGTGGAGCTCTAT
TGCAACCTCTTCAAGGAAGCCATACTGCGTGGCAAGCGGGAACGACGCCA
ACTCCTTGGCCTTCCGCCTCTGGACGAATCCCAGCCGCGGCGCAGTCGCA
AAACTAAGTAAAAGCTTTCTAGACCAT
BS13068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:59:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS2-RA | 795 | CG2937-PA | 1..795 | 17..811 | 3960 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:59:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS2-RA | 924 | CG2937-RA | 57..855 | 17..815 | 3965 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:59:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4849508..4850281 | 815..42 | 3840 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:59:13 has no hits.
BS13068.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:40:30 Download gff for
BS13068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-RA | 1..795 | 17..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:14:13 Download gff for
BS13068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-RA | 56..854 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:37 Download gff for
BS13068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-RA | 62..849 | 22..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:40:30 Download gff for
BS13068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-RA | 56..854 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:39 Download gff for
BS13068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS2-RA | 62..849 | 22..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:39 Download gff for
BS13068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4850339..4850358 | 22..41 | 100 | | Minus |
| 2L | 4849514..4850281 | 42..809 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:37 Download gff for
BS13068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4849514..4850281 | 42..809 | 99 | <- | Minus |
| arm_2L | 4850339..4850358 | 22..41 | 100 | | Minus |
BS13068.pep Sequence
Translation from 16 to 810
> BS13068.pep
MLRKSFANLPRFGQMCGLPRRLQSTQPEQSVETEPEDIALVEQRILKHPD
YFQVHNLFTVRDLFNARVHYGHKEGSLDDRMRPYLFGSRLGHLIFDLDKT
ASHLRDALNFAAHIAFRDGIILFFNRNAMNSHLVERKAQEAGEFSHTRFW
RGGIFTNANVQFDAVTRLPDLCIFLNTQNNVMAQHTAVRDAAKMAIPTIG
IVDSNCNPNLITYPVPGNDDSPAAVELYCNLFKEAILRGKRERRQLLGLP
PLDESQPRRSRKTK*
BS13068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS2-PA | 264 | CG2937-PA | 1..264 | 1..264 | 1389 | 100 | Plus |
