Clone BS13070 Report

Search the DGRC for BS13070

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG1463-RA
Protein status:BS13070.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13070.3prime Sequence

673 bp (591 high quality bases) assembled on 2006-10-13

> BS13070.3prime
ATGGTCTAGAAAGCTTCTACAGTACAACACTTTGTCTGTAGAGTGCCTCG
AATTCTTCGTCGTCTTCAGTCTCACTAACATCTTCACCAGCAAATGCTGC
AGCCAGTTTATAGTACACATCATGTGAATCATCTAAGTCCTCCGCAACTG
CGTTGGAGGATGTTCCTGGTTTGGTTACAGGCACCTGCTCTTCGTGCTCT
TCCTCGAATTCCTCACTGCTGTCGATGGCTTCATATCCTCCTGGTGGCTT
CGGATCGTAGGTGACCAAAATGGTGGGAAACTCCACGATGGTTTTGCCGA
CTAGATTCTCGGCCAGCGTTTTGGTCGAGTCCAGGAGATAACACCTCGTA
GAGCTGCGTCGCACGCCCTCGGCTCTAAGCCAAAAACTCAGCTGACCAAT
ACCGGCAGTCTGATGGTTGGCCAGCAGTTTGCGTTGTTCCCGTGCCGTCT
CGTGCCGCAGATCCACATACTTGGCTACCAGATCGGGCAGCGTGAGCTCC
TCATTGCATTCCTTGTCCACAAATCGAGTTACATTCCGGGGAAGGCTTGC
CTCGTATGGAATATTTGCAAACAGCCACTCTATACGCCAATGGAATCGTC
CCAGTTTCCAGTTTAAATACGTGGTGTTCTCCTTGTGCCGACTGAAATTC
TCCAGTTGCAAGCGCAAATTAAT

BS13070.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1463-PA 1011 CG1463-RA 355..1011 673..17 3235 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1463-RB 1234 CG1463-RB 412..1070 673..15 3265 99.7 Minus
CG1463-RC 1293 CG1463-RC 471..1129 673..15 3265 99.7 Minus
CG1463-RA 1526 CG1463-RA 412..1070 673..15 3265 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12610687..12611145 215..673 2265 99.6 Plus
X 23542271 X 12610433..12610634 15..216 1010 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:45:09 has no hits.

BS13070.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:52 Download gff for BS13070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1463-PA 355..1011 17..673 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:51 Download gff for BS13070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 412..1070 15..673 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:26 Download gff for BS13070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 412..1070 15..673 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:26 Download gff for BS13070.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12610433..12610634 15..216 100 <- Plus
X 12610689..12611145 217..673 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:51 Download gff for BS13070.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12504466..12504667 15..216 100 <- Plus
arm_X 12504722..12505178 217..673 99   Plus

BS13070.5prime Sequence

752 bp (612 high quality bases) assembled on 2006-10-13

> BS13070.5prime
GAAGTTATCAGTCGACATGGCCGATGAGACCAGCACTAAGACCAGAACTA
TGCGCCTGGGAATGTGCGAGGTGTGCGCCGCAAAGGAGGCCTGCTACGCA
TGTCCCAAATGCGAGGTGAAAACATGCAGCCTGCCCTGCGTCCAGATCCA
TAAGAAGGAGCTCAACTGCGATGGCCAGCGGGATCGCACCAAGTTCGTAC
CGCTGAGCGAGATGACCTCGCGGGAATTCATGAGTGACTACTGCTTCTTG
GAGGAGTGCACACGCTATGCAGAGAATCGAAAATCCGATCCGTGCAAGCG
ATTTACCCACGACCAAAGGAATCTCCCAGTGACTCAACATCGCATGCGGA
TGGCAGCCAAGAAGCGTAACATTAATCTGCGCTTGCAACTGGAGAATTTC
AGTCGGCACAAGGAGAACACCACGTATCTAAACTGGAAACTGGGACGATT
CCATTGGCGTATAGAGTGGCTGTTTGCAAATATTCCATACGAGGCAAGCC
TTCCCCGGAATGTAACTCGATTTGTGGACAAGGAATGCAATGAGGAGCTC
ACGCTGCCCGATCTGGTAGCCAAGTATGTGGATCTGCGGCACGAGACGGC
ACGGGAACAACGCAAACTGCTGGCCAACCATCAGACTGCCGGTATTGGTC
AGCTGAGTTTTTGGCTTAGAGCCGAGGGCGTGCGACGCAGCTCTACGAGG
TGTTATCTCCTGGACTCGACCAAAACGCTGGCCGAGAATCTAATCGGCAA
AA

BS13070.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1463-PA 1011 CG1463-RA 1..736 17..752 3655 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1463-RB 1234 CG1463-RB 49..793 9..752 3670 99.6 Plus
CG1463-RC 1293 CG1463-RC 108..852 9..752 3670 99.6 Plus
CG1463-RA 1526 CG1463-RA 49..793 9..752 3670 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12610764..12611473 752..43 3535 99.9 Minus
Blast to na_te.dros performed on 2015-02-11 09:15:11 has no hits.

BS13070.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:52 Download gff for BS13070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1463-PA 1..732 17..748 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:44 Download gff for BS13070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 44..789 1..748 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:31:53 Download gff for BS13070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 44..789 1..748 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:31:53 Download gff for BS13070.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12610768..12611470 46..748 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:44 Download gff for BS13070.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12504801..12505503 46..748 99 <- Minus

BS13070.complete Sequence

1043 bp assembled on 2006-11-01

GenBank Submission: FJ638852

> BS13070.complete
GAAGTTATCAGTCGACATGGCCGATGAGACCAGCACTAAGACCAGAACTA
TGCGCCTGGGAATGTGCGAGGTGTGCGCCGCAAAGGAGGCCTGCTACGCA
TGTCCCAAATGCGAGGTGAAAACATGCAGCCTGCCCTGCGTCCAGATCCA
TAAGAAGGAGCTCAACTGCGATGGCCAGCGGGATCGCACCAAGTTCGTAC
CGCTGAGCGAGATGACCTCGCGGGAATTCATGAGTGACTACTGCTTCTTG
GAGGAGTGCACACGCTATGCAGAGAATCGAAAATCCGATCCGTGCAAGCG
ATTTACCCACGACCAAAGGAATCTCCCAGTGACTCAACATCGCATGCGGA
TGGCAGCCAAGAAGCGTAACATTAATCTGCGCTTGCAACTGGAGAATTTC
AGTCGGCACAAGGAGAACACCACGTATCTAAACTGGAAACTGGGACGATT
CCATTGGCGTATAGAGTGGCTGTTTGCAAATATTCCATACGAGGCAAGCC
TTCCCCGGAATGTAACTCGATTTGTGGACAAGGAATGCAATGAGGAGCTC
ACGCTGCCCGATCTGGTAGCCAAGTATGTGGATCTGCGGCACGAGACGGC
ACGGGAACAACGCAAACTGCTGGCCAACCATCAGACTGCCGGTATTGGTC
AGCTGAGTTTTTGGCTTAGAGCCGAGGGCGTGCGACGCAGCTCTACGAGG
TGTTATCTCCTGGACTCGACCAAAACGCTGGCCGAGAATCTAGTCGGCAA
AACCATCGTGGAGTTTCCCACCATTTTGGTCACCTACGATCCGAAGCCAC
CAGGAGGATATGAAGCCATCGACAGCAGTGAGGAATTCGAGGAAGAGCAC
GAAGAGCAGGTGCCTGTAACCAAACCAGGAACATCCTCCAACGCAGTTGC
GGAGGACTTAGATGATTCACATGATGTGTACTATAAACTGGCTGCAGCAT
TTGCTGGTGAAGATGTTAGTGAGACTGAAGACGACGAAGAATTCGAGGCA
CTCTACAGACAAAGTGTTGTACTGTAGAAGCTTTCTAGACCAT

BS13070.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1463-RB 1011 CG1463-PB 1..1011 17..1027 5055 100 Plus
CG1463-RC 1011 CG1463-PC 1..1011 17..1027 5055 100 Plus
CG1463-RA 1011 CG1463-PA 1..1011 17..1027 5055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1463-RB 1234 CG1463-RB 58..1070 17..1029 5065 100 Plus
CG1463-RC 1293 CG1463-RC 117..1129 17..1029 5065 100 Plus
CG1463-RA 1526 CG1463-RA 58..1070 17..1029 5065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12610687..12611473 829..43 3935 100 Minus
X 23542271 X 12610433..12610634 1029..828 1010 100 Minus
Blast to na_te.dros performed on 2014-11-27 17:00:00 has no hits.

BS13070.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:30 Download gff for BS13070.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 1..1011 17..1027 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:27 Download gff for BS13070.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 35..1061 1..1029 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:51 Download gff for BS13070.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 58..1068 17..1027 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:30 Download gff for BS13070.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 35..1061 1..1029 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:03 Download gff for BS13070.complete
Subject Subject Range Query Range Percent Splice Strand
CG1463-RA 58..1068 17..1027 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:03 Download gff for BS13070.complete
Subject Subject Range Query Range Percent Splice Strand
X 12610689..12611470 46..827 100 <- Minus
X 12610435..12610634 828..1027 100 <- Minus
X 12611523..12611551 17..45 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:51 Download gff for BS13070.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12504468..12504667 828..1027 100 <- Minus
arm_X 12504722..12505503 46..827 100 <- Minus
arm_X 12505556..12505584 17..45 100   Minus

BS13070.pep Sequence

Translation from 16 to 1026

> BS13070.pep
MADETSTKTRTMRLGMCEVCAAKEACYACPKCEVKTCSLPCVQIHKKELN
CDGQRDRTKFVPLSEMTSREFMSDYCFLEECTRYAENRKSDPCKRFTHDQ
RNLPVTQHRMRMAAKKRNINLRLQLENFSRHKENTTYLNWKLGRFHWRIE
WLFANIPYEASLPRNVTRFVDKECNEELTLPDLVAKYVDLRHETAREQRK
LLANHQTAGIGQLSFWLRAEGVRRSSTRCYLLDSTKTLAENLVGKTIVEF
PTILVTYDPKPPGGYEAIDSSEEFEEEHEEQVPVTKPGTSSNAVAEDLDD
SHDVYYKLAAAFAGEDVSETEDDEEFEALYRQSVVL*

BS13070.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1463-PB 336 CG1463-PB 1..336 1..336 1791 100 Plus
CG1463-PC 336 CG1463-PC 1..336 1..336 1791 100 Plus
CG1463-PA 336 CG1463-PA 1..336 1..336 1791 100 Plus