Clone Sequence Records
BS13070.3prime Sequence
673 bp (591 high quality bases) assembled on 2006-10-13
> BS13070.3prime
ATGGTCTAGAAAGCTTCTACAGTACAACACTTTGTCTGTAGAGTGCCTCG
AATTCTTCGTCGTCTTCAGTCTCACTAACATCTTCACCAGCAAATGCTGC
AGCCAGTTTATAGTACACATCATGTGAATCATCTAAGTCCTCCGCAACTG
CGTTGGAGGATGTTCCTGGTTTGGTTACAGGCACCTGCTCTTCGTGCTCT
TCCTCGAATTCCTCACTGCTGTCGATGGCTTCATATCCTCCTGGTGGCTT
CGGATCGTAGGTGACCAAAATGGTGGGAAACTCCACGATGGTTTTGCCGA
CTAGATTCTCGGCCAGCGTTTTGGTCGAGTCCAGGAGATAACACCTCGTA
GAGCTGCGTCGCACGCCCTCGGCTCTAAGCCAAAAACTCAGCTGACCAAT
ACCGGCAGTCTGATGGTTGGCCAGCAGTTTGCGTTGTTCCCGTGCCGTCT
CGTGCCGCAGATCCACATACTTGGCTACCAGATCGGGCAGCGTGAGCTCC
TCATTGCATTCCTTGTCCACAAATCGAGTTACATTCCGGGGAAGGCTTGC
CTCGTATGGAATATTTGCAAACAGCCACTCTATACGCCAATGGAATCGTC
CCAGTTTCCAGTTTAAATACGTGGTGTTCTCCTTGTGCCGACTGAAATTC
TCCAGTTGCAAGCGCAAATTAAT
BS13070.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1463-PA | 1011 | CG1463-RA | 355..1011 | 673..17 | 3235 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1463-RB | 1234 | CG1463-RB | 412..1070 | 673..15 | 3265 | 99.7 | Minus |
CG1463-RC | 1293 | CG1463-RC | 471..1129 | 673..15 | 3265 | 99.7 | Minus |
CG1463-RA | 1526 | CG1463-RA | 412..1070 | 673..15 | 3265 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:45:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12610687..12611145 | 215..673 | 2265 | 99.6 | Plus |
X | 23542271 | X | 12610433..12610634 | 15..216 | 1010 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:45:09 has no hits.
BS13070.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:52 Download gff for
BS13070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-PA | 355..1011 | 17..673 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:51 Download gff for
BS13070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-RA | 412..1070 | 15..673 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:26 Download gff for
BS13070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-RA | 412..1070 | 15..673 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:26 Download gff for
BS13070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12610433..12610634 | 15..216 | 100 | <- | Plus |
X | 12610689..12611145 | 217..673 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:51 Download gff for
BS13070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12504466..12504667 | 15..216 | 100 | <- | Plus |
arm_X | 12504722..12505178 | 217..673 | 99 | | Plus |
BS13070.5prime Sequence
752 bp (612 high quality bases) assembled on 2006-10-13
> BS13070.5prime
GAAGTTATCAGTCGACATGGCCGATGAGACCAGCACTAAGACCAGAACTA
TGCGCCTGGGAATGTGCGAGGTGTGCGCCGCAAAGGAGGCCTGCTACGCA
TGTCCCAAATGCGAGGTGAAAACATGCAGCCTGCCCTGCGTCCAGATCCA
TAAGAAGGAGCTCAACTGCGATGGCCAGCGGGATCGCACCAAGTTCGTAC
CGCTGAGCGAGATGACCTCGCGGGAATTCATGAGTGACTACTGCTTCTTG
GAGGAGTGCACACGCTATGCAGAGAATCGAAAATCCGATCCGTGCAAGCG
ATTTACCCACGACCAAAGGAATCTCCCAGTGACTCAACATCGCATGCGGA
TGGCAGCCAAGAAGCGTAACATTAATCTGCGCTTGCAACTGGAGAATTTC
AGTCGGCACAAGGAGAACACCACGTATCTAAACTGGAAACTGGGACGATT
CCATTGGCGTATAGAGTGGCTGTTTGCAAATATTCCATACGAGGCAAGCC
TTCCCCGGAATGTAACTCGATTTGTGGACAAGGAATGCAATGAGGAGCTC
ACGCTGCCCGATCTGGTAGCCAAGTATGTGGATCTGCGGCACGAGACGGC
ACGGGAACAACGCAAACTGCTGGCCAACCATCAGACTGCCGGTATTGGTC
AGCTGAGTTTTTGGCTTAGAGCCGAGGGCGTGCGACGCAGCTCTACGAGG
TGTTATCTCCTGGACTCGACCAAAACGCTGGCCGAGAATCTAATCGGCAA
AA
BS13070.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1463-PA | 1011 | CG1463-RA | 1..736 | 17..752 | 3655 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1463-RB | 1234 | CG1463-RB | 49..793 | 9..752 | 3670 | 99.6 | Plus |
CG1463-RC | 1293 | CG1463-RC | 108..852 | 9..752 | 3670 | 99.6 | Plus |
CG1463-RA | 1526 | CG1463-RA | 49..793 | 9..752 | 3670 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12610764..12611473 | 752..43 | 3535 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:15:11 has no hits.
BS13070.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:52 Download gff for
BS13070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-PA | 1..732 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:44 Download gff for
BS13070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-RA | 44..789 | 1..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:31:53 Download gff for
BS13070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-RA | 44..789 | 1..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:31:53 Download gff for
BS13070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12610768..12611470 | 46..748 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:44 Download gff for
BS13070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12504801..12505503 | 46..748 | 99 | <- | Minus |
BS13070.complete Sequence
1043 bp assembled on 2006-11-01
GenBank Submission: FJ638852
> BS13070.complete
GAAGTTATCAGTCGACATGGCCGATGAGACCAGCACTAAGACCAGAACTA
TGCGCCTGGGAATGTGCGAGGTGTGCGCCGCAAAGGAGGCCTGCTACGCA
TGTCCCAAATGCGAGGTGAAAACATGCAGCCTGCCCTGCGTCCAGATCCA
TAAGAAGGAGCTCAACTGCGATGGCCAGCGGGATCGCACCAAGTTCGTAC
CGCTGAGCGAGATGACCTCGCGGGAATTCATGAGTGACTACTGCTTCTTG
GAGGAGTGCACACGCTATGCAGAGAATCGAAAATCCGATCCGTGCAAGCG
ATTTACCCACGACCAAAGGAATCTCCCAGTGACTCAACATCGCATGCGGA
TGGCAGCCAAGAAGCGTAACATTAATCTGCGCTTGCAACTGGAGAATTTC
AGTCGGCACAAGGAGAACACCACGTATCTAAACTGGAAACTGGGACGATT
CCATTGGCGTATAGAGTGGCTGTTTGCAAATATTCCATACGAGGCAAGCC
TTCCCCGGAATGTAACTCGATTTGTGGACAAGGAATGCAATGAGGAGCTC
ACGCTGCCCGATCTGGTAGCCAAGTATGTGGATCTGCGGCACGAGACGGC
ACGGGAACAACGCAAACTGCTGGCCAACCATCAGACTGCCGGTATTGGTC
AGCTGAGTTTTTGGCTTAGAGCCGAGGGCGTGCGACGCAGCTCTACGAGG
TGTTATCTCCTGGACTCGACCAAAACGCTGGCCGAGAATCTAGTCGGCAA
AACCATCGTGGAGTTTCCCACCATTTTGGTCACCTACGATCCGAAGCCAC
CAGGAGGATATGAAGCCATCGACAGCAGTGAGGAATTCGAGGAAGAGCAC
GAAGAGCAGGTGCCTGTAACCAAACCAGGAACATCCTCCAACGCAGTTGC
GGAGGACTTAGATGATTCACATGATGTGTACTATAAACTGGCTGCAGCAT
TTGCTGGTGAAGATGTTAGTGAGACTGAAGACGACGAAGAATTCGAGGCA
CTCTACAGACAAAGTGTTGTACTGTAGAAGCTTTCTAGACCAT
BS13070.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1463-RB | 1011 | CG1463-PB | 1..1011 | 17..1027 | 5055 | 100 | Plus |
CG1463-RC | 1011 | CG1463-PC | 1..1011 | 17..1027 | 5055 | 100 | Plus |
CG1463-RA | 1011 | CG1463-PA | 1..1011 | 17..1027 | 5055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1463-RB | 1234 | CG1463-RB | 58..1070 | 17..1029 | 5065 | 100 | Plus |
CG1463-RC | 1293 | CG1463-RC | 117..1129 | 17..1029 | 5065 | 100 | Plus |
CG1463-RA | 1526 | CG1463-RA | 58..1070 | 17..1029 | 5065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12610687..12611473 | 829..43 | 3935 | 100 | Minus |
X | 23542271 | X | 12610433..12610634 | 1029..828 | 1010 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:00:00 has no hits.
BS13070.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:30 Download gff for
BS13070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-RA | 1..1011 | 17..1027 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:27 Download gff for
BS13070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-RA | 35..1061 | 1..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:51 Download gff for
BS13070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-RA | 58..1068 | 17..1027 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:30 Download gff for
BS13070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-RA | 35..1061 | 1..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:03 Download gff for
BS13070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1463-RA | 58..1068 | 17..1027 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:03 Download gff for
BS13070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12610689..12611470 | 46..827 | 100 | <- | Minus |
X | 12610435..12610634 | 828..1027 | 100 | <- | Minus |
X | 12611523..12611551 | 17..45 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:51 Download gff for
BS13070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12504468..12504667 | 828..1027 | 100 | <- | Minus |
arm_X | 12504722..12505503 | 46..827 | 100 | <- | Minus |
arm_X | 12505556..12505584 | 17..45 | 100 | | Minus |
BS13070.pep Sequence
Translation from 16 to 1026
> BS13070.pep
MADETSTKTRTMRLGMCEVCAAKEACYACPKCEVKTCSLPCVQIHKKELN
CDGQRDRTKFVPLSEMTSREFMSDYCFLEECTRYAENRKSDPCKRFTHDQ
RNLPVTQHRMRMAAKKRNINLRLQLENFSRHKENTTYLNWKLGRFHWRIE
WLFANIPYEASLPRNVTRFVDKECNEELTLPDLVAKYVDLRHETAREQRK
LLANHQTAGIGQLSFWLRAEGVRRSSTRCYLLDSTKTLAENLVGKTIVEF
PTILVTYDPKPPGGYEAIDSSEEFEEEHEEQVPVTKPGTSSNAVAEDLDD
SHDVYYKLAAAFAGEDVSETEDDEEFEALYRQSVVL*
BS13070.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1463-PB | 336 | CG1463-PB | 1..336 | 1..336 | 1791 | 100 | Plus |
CG1463-PC | 336 | CG1463-PC | 1..336 | 1..336 | 1791 | 100 | Plus |
CG1463-PA | 336 | CG1463-PA | 1..336 | 1..336 | 1791 | 100 | Plus |