Clone Sequence Records
BS13073.3prime Sequence
672 bp (672 high quality bases) assembled on 2006-10-13
> BS13073.3prime
ATGGTCTAGAAAGCTTCTACGTTAGCTTCTCGTCCAGGAATAGTGGATCC
AAACTGCACTTTTGCCGCTGTTCCATGTAATCCAAAAACTGGTGGTCAAA
TAAACGCTGCCCCATGCTGCGTGCCACATCGTCGGATTCGTCGGTGTTTG
CCTTCTCTATGAGCAGCTCAATTTCCTTGGACAAAAATTCTTTGGTCGCA
TCGCTCATCTTCTTTTGCGGCTGGCCCATCAAAGCGTTTTCCAGAAACTT
GTAGGCCTCATTCAAGTCAATGCCGTTCAGTTCCGTTGGCGATGGCTTTG
TCTCATTTTGGATTATGGAGTTCACAACGACGGCTGCTTCGAATTCACAG
AGTTCAGCGAGTTGCGAACTTTTCATGAGCTCCAGCCACTGGTTAATGTT
GTTTAAGCTAACGGAGTCGCAGTTTTTCACCATTTCCTCGCCCTTGCCAA
TCATGTCGGCCACATACTGGAGAATGCCATTCGAATTATTTTGATTTTGC
TGCTTGGCTGCTTCGAGCAGGATTTGCTGTGAGTAGCCCAGTCTGTTTAG
TTGCCTTTGCAGCTTAACTTTCACCTCTCTCGGAATCCTTGCAGGCTTTT
CTGCGCCTTTTTGCACGGAGTTTTTCGGTTCCGGCGTAAATTGTTGCTCC
TCCTCCATGTCGACTGATAACT
BS13073.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6685-PA | 642 | CG6685-RA | 1..642 | 658..17 | 3160 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6685-RB | 1534 | CG6685-RB | 24..670 | 658..12 | 3190 | 99.5 | Minus |
CG6685-RA | 929 | CG6685-RA | 24..670 | 658..12 | 3190 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9967834..9968041 | 261..468 | 1025 | 99.5 | Plus |
3L | 28110227 | 3L | 9968105..9968294 | 469..658 | 935 | 99.5 | Plus |
3L | 28110227 | 3L | 9967467..9967623 | 12..168 | 770 | 99.4 | Plus |
3L | 28110227 | 3L | 9967687..9967780 | 167..260 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:24:01 has no hits.
BS13073.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:53 Download gff for
BS13073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-PA | 1..642 | 17..658 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:31 Download gff for
BS13073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-RA | 16..674 | 7..666 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:22 Download gff for
BS13073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-RA | 16..674 | 7..666 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:22 Download gff for
BS13073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9967687..9967780 | 167..260 | 100 | <- | Plus |
3L | 9967834..9968041 | 261..468 | 99 | <- | Plus |
3L | 9968105..9968302 | 469..666 | 97 | | Plus |
3L | 9967463..9967621 | 7..166 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:31 Download gff for
BS13073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9960563..9960721 | 7..166 | 98 | <- | Plus |
arm_3L | 9960787..9960880 | 167..260 | 100 | <- | Plus |
arm_3L | 9960934..9961141 | 261..468 | 99 | <- | Plus |
arm_3L | 9961205..9961402 | 469..666 | 97 | | Plus |
BS13073.5prime Sequence
672 bp (672 high quality bases) assembled on 2006-10-13
> BS13073.5prime
GAAGTTATCAGTCGACATGGAGGAGGAGCAACAATTTACGCCGGAACCGA
AAAACTCCGCGCAAAAAGGCGCAGAAAAGCCTGCAAGGATTCCGAGAGAG
GTGAAAGTTAAGCTGCAAAGGCAACTAAACAGACTGGGCTACTCACAGCA
AATCCTGCTCGAAGCAGCCAAGCAGCAAAATCAAAATAATTCGAATGGCA
TTCTCCAGTATGTGGCCGACATGATTGGCAAGGGCGAGGAAATGGTGAAA
AACTGCGACTCCGTTAGCTTAAACAACATTAACCAGTGGCTGGAGCTCAT
GAAAAGTTCGCAACTCGCTGAACTCTGCGAATTCGAAGCAGCCGTCGTTG
TGAACTCCATAATCCAAAATGAGACAAAGCCATCGCCAACGGAACTGAAC
GGCATTGACTTGAATGAGGCCTACAAGTTTCTGGAAAACGCTTTGATGGG
CCAGCCGCAAAAGAAGATGAGCGATGCGACCAAAGAATTTTTGTCCAAGG
AAATTGAGCTGCTCATAGAGAAGGCAAACACCGACGAATCCGACGATGTG
GCACGCAGCATGGGGCAGCGTTTATTTGACCACCAGTTTTTGGATTACAT
GGAACAGCGGCAAAAGTGCAGTTTGGATCCACTATTCCTGGACGAGAAGC
TAACGTAGAAGCTTTCTAGACC
BS13073.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6685-PA | 642 | CG6685-RA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6685-RB | 1534 | CG6685-RB | 24..670 | 17..663 | 3220 | 99.8 | Plus |
CG6685-RA | 929 | CG6685-RA | 24..670 | 17..663 | 3220 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9967834..9968041 | 414..207 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 9968105..9968294 | 206..17 | 950 | 100 | Minus |
3L | 28110227 | 3L | 9967467..9967623 | 663..507 | 770 | 99.4 | Minus |
3L | 28110227 | 3L | 9967687..9967780 | 508..415 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:21:43 has no hits.
BS13073.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:54 Download gff for
BS13073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:24 Download gff for
BS13073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-RA | 16..674 | 9..668 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:20 Download gff for
BS13073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-RA | 16..674 | 9..668 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:20 Download gff for
BS13073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9967463..9967621 | 509..668 | 98 | <- | Minus |
3L | 9967687..9967780 | 415..508 | 100 | <- | Minus |
3L | 9967834..9968041 | 207..414 | 100 | <- | Minus |
3L | 9968105..9968302 | 9..206 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:24 Download gff for
BS13073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9960563..9960721 | 509..668 | 98 | <- | Minus |
arm_3L | 9960787..9960880 | 415..508 | 100 | <- | Minus |
arm_3L | 9960934..9961141 | 207..414 | 100 | <- | Minus |
arm_3L | 9961205..9961402 | 9..206 | 97 | | Minus |
BS13073.complete Sequence
674 bp assembled on 2006-11-01
GenBank Submission: FJ637374
> BS13073.complete
GAAGTTATCAGTCGACATGGAGGAGGAGCAACAATTTACGCCGGAACCGA
AAAACTCCGCGCAAAAAGGCGCAGAAAAGCCTGCAAGGATTCCGAGAGAG
GTGAAAGTTAAGCTGCAAAGGCAACTAAACAGACTGGGCTACTCACAGCA
AATCCTGCTCGAAGCAGCCAAGCAGCAAAATCAAAATAATTCGAATGGCA
TTCTCCAGTATGTGGCCGACATGATTGGCAAGGGCGAGGAAATGGTGAAA
AACTGCGACTCCGTTAGCTTAAACAACATTAACCAGTGGCTGGAGCTCAT
GAAAAGTTCGCAACTCGCTGAACTCTGCGAATTCGAAGCAGCCGTCGTTG
TGAACTCCATAATCCAAAATGAGACAAAGCCATCGCCAACGGAACTGAAC
GGCATTGACTTGAATGAGGCCTACAAGTTTCTGGAAAACGCTTTGATGGG
CCAGCCGCAAAAGAAGATGAGCGATGCGACCAAAGAATTTTTGTCCAAGG
AAATTGAGCTGCTCATAGAGAAGGCAAACACCGACGAATCCGACGATGTG
GCACGCAGCATGGGGCAGCGTTTATTTGACCACCAGTTTTTGGATTACAT
GGAACAGCGGCAAAAGTGCAGTTTGGATCCACTATTCCTGGACGAGAAGC
TAACGTAGAAGCTTTCTAGACCAT
BS13073.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6685-RB | 642 | CG6685-PB | 1..642 | 17..658 | 3210 | 100 | Plus |
CG6685-RA | 642 | CG6685-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6685-RB | 1534 | CG6685-RB | 24..670 | 17..663 | 3220 | 99.8 | Plus |
CG6685-RA | 929 | CG6685-RA | 24..670 | 17..663 | 3220 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9967834..9968041 | 414..207 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 9968105..9968294 | 206..17 | 950 | 100 | Minus |
3L | 28110227 | 3L | 9967467..9967623 | 663..507 | 770 | 99.4 | Minus |
3L | 28110227 | 3L | 9967687..9967780 | 508..415 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:26:10 has no hits.
BS13073.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:31 Download gff for
BS13073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-RA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:29 Download gff for
BS13073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-RA | 1..658 | 10..668 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:31 Download gff for
BS13073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-RA | 24..665 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:31 Download gff for
BS13073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-RA | 1..658 | 10..668 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:48 Download gff for
BS13073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6685-RA | 24..665 | 17..658 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:48 Download gff for
BS13073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9967472..9967621 | 509..658 | 100 | <- | Minus |
3L | 9967687..9967780 | 415..508 | 100 | <- | Minus |
3L | 9967834..9968041 | 207..414 | 100 | <- | Minus |
3L | 9968105..9968294 | 17..206 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:31 Download gff for
BS13073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9960572..9960721 | 509..658 | 100 | <- | Minus |
arm_3L | 9960787..9960880 | 415..508 | 100 | <- | Minus |
arm_3L | 9960934..9961141 | 207..414 | 100 | <- | Minus |
arm_3L | 9961205..9961394 | 17..206 | 100 | | Minus |
BS13073.pep Sequence
Translation from 16 to 657
> BS13073.pep
MEEEQQFTPEPKNSAQKGAEKPARIPREVKVKLQRQLNRLGYSQQILLEA
AKQQNQNNSNGILQYVADMIGKGEEMVKNCDSVSLNNINQWLELMKSSQL
AELCEFEAAVVVNSIIQNETKPSPTELNGIDLNEAYKFLENALMGQPQKK
MSDATKEFLSKEIELLIEKANTDESDDVARSMGQRLFDHQFLDYMEQRQK
CSLDPLFLDEKLT*
BS13073.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6685-PB | 213 | CG6685-PB | 1..213 | 1..213 | 1081 | 100 | Plus |
CG6685-PA | 213 | CG6685-PA | 1..213 | 1..213 | 1081 | 100 | Plus |