Clone BS13073 Report

Search the DGRC for BS13073

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG6685-RA
Protein status:BS13073.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13073.3prime Sequence

672 bp (672 high quality bases) assembled on 2006-10-13

> BS13073.3prime
ATGGTCTAGAAAGCTTCTACGTTAGCTTCTCGTCCAGGAATAGTGGATCC
AAACTGCACTTTTGCCGCTGTTCCATGTAATCCAAAAACTGGTGGTCAAA
TAAACGCTGCCCCATGCTGCGTGCCACATCGTCGGATTCGTCGGTGTTTG
CCTTCTCTATGAGCAGCTCAATTTCCTTGGACAAAAATTCTTTGGTCGCA
TCGCTCATCTTCTTTTGCGGCTGGCCCATCAAAGCGTTTTCCAGAAACTT
GTAGGCCTCATTCAAGTCAATGCCGTTCAGTTCCGTTGGCGATGGCTTTG
TCTCATTTTGGATTATGGAGTTCACAACGACGGCTGCTTCGAATTCACAG
AGTTCAGCGAGTTGCGAACTTTTCATGAGCTCCAGCCACTGGTTAATGTT
GTTTAAGCTAACGGAGTCGCAGTTTTTCACCATTTCCTCGCCCTTGCCAA
TCATGTCGGCCACATACTGGAGAATGCCATTCGAATTATTTTGATTTTGC
TGCTTGGCTGCTTCGAGCAGGATTTGCTGTGAGTAGCCCAGTCTGTTTAG
TTGCCTTTGCAGCTTAACTTTCACCTCTCTCGGAATCCTTGCAGGCTTTT
CTGCGCCTTTTTGCACGGAGTTTTTCGGTTCCGGCGTAAATTGTTGCTCC
TCCTCCATGTCGACTGATAACT

BS13073.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6685-PA 642 CG6685-RA 1..642 658..17 3160 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6685-RB 1534 CG6685-RB 24..670 658..12 3190 99.5 Minus
CG6685-RA 929 CG6685-RA 24..670 658..12 3190 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9967834..9968041 261..468 1025 99.5 Plus
3L 28110227 3L 9968105..9968294 469..658 935 99.5 Plus
3L 28110227 3L 9967467..9967623 12..168 770 99.4 Plus
3L 28110227 3L 9967687..9967780 167..260 470 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:24:01 has no hits.

BS13073.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:53 Download gff for BS13073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6685-PA 1..642 17..658 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:31 Download gff for BS13073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 16..674 7..666 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:22 Download gff for BS13073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 16..674 7..666 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:22 Download gff for BS13073.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9967687..9967780 167..260 100 <- Plus
3L 9967834..9968041 261..468 99 <- Plus
3L 9968105..9968302 469..666 97   Plus
3L 9967463..9967621 7..166 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:31 Download gff for BS13073.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9960563..9960721 7..166 98 <- Plus
arm_3L 9960787..9960880 167..260 100 <- Plus
arm_3L 9960934..9961141 261..468 99 <- Plus
arm_3L 9961205..9961402 469..666 97   Plus

BS13073.5prime Sequence

672 bp (672 high quality bases) assembled on 2006-10-13

> BS13073.5prime
GAAGTTATCAGTCGACATGGAGGAGGAGCAACAATTTACGCCGGAACCGA
AAAACTCCGCGCAAAAAGGCGCAGAAAAGCCTGCAAGGATTCCGAGAGAG
GTGAAAGTTAAGCTGCAAAGGCAACTAAACAGACTGGGCTACTCACAGCA
AATCCTGCTCGAAGCAGCCAAGCAGCAAAATCAAAATAATTCGAATGGCA
TTCTCCAGTATGTGGCCGACATGATTGGCAAGGGCGAGGAAATGGTGAAA
AACTGCGACTCCGTTAGCTTAAACAACATTAACCAGTGGCTGGAGCTCAT
GAAAAGTTCGCAACTCGCTGAACTCTGCGAATTCGAAGCAGCCGTCGTTG
TGAACTCCATAATCCAAAATGAGACAAAGCCATCGCCAACGGAACTGAAC
GGCATTGACTTGAATGAGGCCTACAAGTTTCTGGAAAACGCTTTGATGGG
CCAGCCGCAAAAGAAGATGAGCGATGCGACCAAAGAATTTTTGTCCAAGG
AAATTGAGCTGCTCATAGAGAAGGCAAACACCGACGAATCCGACGATGTG
GCACGCAGCATGGGGCAGCGTTTATTTGACCACCAGTTTTTGGATTACAT
GGAACAGCGGCAAAAGTGCAGTTTGGATCCACTATTCCTGGACGAGAAGC
TAACGTAGAAGCTTTCTAGACC

BS13073.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6685-PA 642 CG6685-RA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6685-RB 1534 CG6685-RB 24..670 17..663 3220 99.8 Plus
CG6685-RA 929 CG6685-RA 24..670 17..663 3220 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9967834..9968041 414..207 1040 100 Minus
3L 28110227 3L 9968105..9968294 206..17 950 100 Minus
3L 28110227 3L 9967467..9967623 663..507 770 99.4 Minus
3L 28110227 3L 9967687..9967780 508..415 470 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:21:43 has no hits.

BS13073.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:54 Download gff for BS13073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6685-PA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:24 Download gff for BS13073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 16..674 9..668 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:20 Download gff for BS13073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 16..674 9..668 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:20 Download gff for BS13073.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9967463..9967621 509..668 98 <- Minus
3L 9967687..9967780 415..508 100 <- Minus
3L 9967834..9968041 207..414 100 <- Minus
3L 9968105..9968302 9..206 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:24 Download gff for BS13073.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9960563..9960721 509..668 98 <- Minus
arm_3L 9960787..9960880 415..508 100 <- Minus
arm_3L 9960934..9961141 207..414 100 <- Minus
arm_3L 9961205..9961402 9..206 97   Minus

BS13073.complete Sequence

674 bp assembled on 2006-11-01

GenBank Submission: FJ637374

> BS13073.complete
GAAGTTATCAGTCGACATGGAGGAGGAGCAACAATTTACGCCGGAACCGA
AAAACTCCGCGCAAAAAGGCGCAGAAAAGCCTGCAAGGATTCCGAGAGAG
GTGAAAGTTAAGCTGCAAAGGCAACTAAACAGACTGGGCTACTCACAGCA
AATCCTGCTCGAAGCAGCCAAGCAGCAAAATCAAAATAATTCGAATGGCA
TTCTCCAGTATGTGGCCGACATGATTGGCAAGGGCGAGGAAATGGTGAAA
AACTGCGACTCCGTTAGCTTAAACAACATTAACCAGTGGCTGGAGCTCAT
GAAAAGTTCGCAACTCGCTGAACTCTGCGAATTCGAAGCAGCCGTCGTTG
TGAACTCCATAATCCAAAATGAGACAAAGCCATCGCCAACGGAACTGAAC
GGCATTGACTTGAATGAGGCCTACAAGTTTCTGGAAAACGCTTTGATGGG
CCAGCCGCAAAAGAAGATGAGCGATGCGACCAAAGAATTTTTGTCCAAGG
AAATTGAGCTGCTCATAGAGAAGGCAAACACCGACGAATCCGACGATGTG
GCACGCAGCATGGGGCAGCGTTTATTTGACCACCAGTTTTTGGATTACAT
GGAACAGCGGCAAAAGTGCAGTTTGGATCCACTATTCCTGGACGAGAAGC
TAACGTAGAAGCTTTCTAGACCAT

BS13073.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6685-RB 642 CG6685-PB 1..642 17..658 3210 100 Plus
CG6685-RA 642 CG6685-PA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6685-RB 1534 CG6685-RB 24..670 17..663 3220 99.8 Plus
CG6685-RA 929 CG6685-RA 24..670 17..663 3220 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9967834..9968041 414..207 1040 100 Minus
3L 28110227 3L 9968105..9968294 206..17 950 100 Minus
3L 28110227 3L 9967467..9967623 663..507 770 99.4 Minus
3L 28110227 3L 9967687..9967780 508..415 470 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:26:10 has no hits.

BS13073.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:31 Download gff for BS13073.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:29 Download gff for BS13073.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 1..658 10..668 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:31 Download gff for BS13073.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 24..665 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:31 Download gff for BS13073.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 1..658 10..668 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:48 Download gff for BS13073.complete
Subject Subject Range Query Range Percent Splice Strand
CG6685-RA 24..665 17..658 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:48 Download gff for BS13073.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9967472..9967621 509..658 100 <- Minus
3L 9967687..9967780 415..508 100 <- Minus
3L 9967834..9968041 207..414 100 <- Minus
3L 9968105..9968294 17..206 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:31 Download gff for BS13073.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9960572..9960721 509..658 100 <- Minus
arm_3L 9960787..9960880 415..508 100 <- Minus
arm_3L 9960934..9961141 207..414 100 <- Minus
arm_3L 9961205..9961394 17..206 100   Minus

BS13073.pep Sequence

Translation from 16 to 657

> BS13073.pep
MEEEQQFTPEPKNSAQKGAEKPARIPREVKVKLQRQLNRLGYSQQILLEA
AKQQNQNNSNGILQYVADMIGKGEEMVKNCDSVSLNNINQWLELMKSSQL
AELCEFEAAVVVNSIIQNETKPSPTELNGIDLNEAYKFLENALMGQPQKK
MSDATKEFLSKEIELLIEKANTDESDDVARSMGQRLFDHQFLDYMEQRQK
CSLDPLFLDEKLT*

BS13073.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6685-PB 213 CG6685-PB 1..213 1..213 1081 100 Plus
CG6685-PA 213 CG6685-PA 1..213 1..213 1081 100 Plus