Clone Sequence Records
BS13074.3prime Sequence
796 bp (729 high quality bases) assembled on 2006-10-13
> BS13074.3prime
ATGGTCTAGAAAGCTTTTATTTATTTTTCTTAGCACTCGACTCCCTGGAG
ATAGGAACAAGATCTCTAATAATGCCGTTCAGCCGATCTGCGAATGCTTG
GAAAGAGAACTTTTGCTGCACCCGTTTGTGACCCTGGTCTCCCATCTTTA
CACGCAGCTGCTCGTCCCGGAAAAGCTGGAGCATTGCTCCACCAAAGCTC
TTCTCGGTCTTTTCGCACAGAAAGCCAGTGGAAGTGCTCACCACCGTTTC
AGTGGGTCCGCCGCTGTTTAATGCCACGACTGGCTTCGAGCAGTACATGC
CCTCCAGCGGCACAATGCCGAAGTGCTCGTTCTCTGGCGTATACAGCAGA
CAGTGAGCGGCAAAGAGCAGGCGACATTTCTCCTCGTCGGTAGGCGAGCG
TAGCAGCACAACGTGATCCTGAAGTTTCAACTCCTCCGTAAGGTGCTCCA
GCTCCGCGAAGTGCTCCACATTTTCCATGCATCTGGTGTCGTAACCCCCG
GCGATGATCAGGCGACAGCGCTTGAAGTCCGTGGCGGGCAGCATGTCGCC
CAGAAGGCGCAGGGAATGTAAGGCAAGGGCGTGGTTCTTCTTGCGCTCGT
AGCGATTGATGTCCAGATAGATAAAGGCGTTGAGTGGTACTCGCGGATGC
ACTGGCTCGTCCAGTAAAGCAGACCGCTGTTCTAGCTTTTTCTGCATCTG
GTCAAAGTACTGGGTGTGCAGTGAAGGATACAGCACATCCGGCACCGTGC
TCAGTCGGCGAAAGGTGTCCTGGAAGACACGTAGCGTAAATTTGGA
BS13074.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1291-PA | 1275 | CG1291-RA | 496..1275 | 796..17 | 3900 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1291-RA | 1477 | CG1291-RA | 680..1461 | 796..15 | 3910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:55:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3144487..3145268 | 796..15 | 3910 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 21:55:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 3649..3686 | 758..796 | 111 | 79.5 | Plus |
BS13074.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:55 Download gff for
BS13074.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-PA | 497..1275 | 17..795 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:48 Download gff for
BS13074.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-RA | 681..1463 | 11..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:43 Download gff for
BS13074.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-RA | 681..1463 | 11..795 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:43 Download gff for
BS13074.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3144488..3145270 | 11..795 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:48 Download gff for
BS13074.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3144488..3145270 | 11..795 | 99 | | Minus |
BS13074.5prime Sequence
771 bp (699 high quality bases) assembled on 2006-10-13
> BS13074.5prime
GAAGTTATCAGTCGACATGGTTCGAGTTCTGTTCCTCCACCCGGATTTGG
GCATCGGAGGAGCTGAGCGACTGGTGGTGGATGCCGCTCTGGCACTCAAG
GAGCGGGGTCACCAGGTTAGCTTCCTAACGAATCACCACGACAGCACGCA
CTGCTTCAAGGAGACGGCGGACGGCACTTTTCCGGTCCACGTAGTGGGCG
ACTGGTTGCCACGCGGGCTCTTCGGAAGATTCTATGCCATCTGTGCCTAT
CTGCGCATGCTCTATGCGGCGATCTACGCCAGTTTTTTTATGCCCCAGCG
GGAGCAAGTGGACGTGGTGGTGTGCGACCTAATCTCTGTGTGCATTCCAG
TTCTCCGCTTCGCCCCTCATCGTCCGAAGGTTCTATTCTACTGCCACTTT
CCGGATCAGCTTCTCAGCAGCCGTGAAGGACTGCTAAAGCGGCTGTACCG
CCTGCCCATCAACTGGCTGGAGGAGCACACGATCGGTCTAGCAGACAAGG
TGCTGGTCAACTCCAAATTTACGCTACGTGTCTTCCAGGACACCTTTCGC
CGACTGAGCACGGTGCCGGATGTGCTGTATCCTTCACTGCACACCCAGTA
CTTTGACCAGATGCAGAAAAAGCTAGAACAGCGGTCTGCTTTACTGGACG
AGCCAGTGCATCCGCGAGTACCACTCAACGCCTTTATCTATCTGGACATC
AATCGCTACGAGCGCAAGAAGAACCACGCCCTTGCCTTACATTCCCTGCG
CCTTCTGGGCGACATGCTGCC
BS13074.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1291-PA | 1275 | CG1291-RA | 1..755 | 17..771 | 3775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1291-RA | 1477 | CG1291-RA | 184..939 | 16..771 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3143991..3144746 | 16..771 | 3780 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 18:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 3649..3686 | 550..512 | 111 | 79.5 | Minus |
BS13074.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:55 Download gff for
BS13074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-PA | 1..755 | 17..771 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:06 Download gff for
BS13074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-RA | 180..939 | 10..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:23:17 Download gff for
BS13074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-RA | 180..939 | 10..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:23:17 Download gff for
BS13074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3143987..3144746 | 10..771 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:06 Download gff for
BS13074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3143987..3144746 | 10..771 | 99 | | Plus |
BS13074.complete Sequence
1307 bp assembled on 2006-11-01
GenBank Submission: FJ637375
> BS13074.complete
GAAGTTATCAGTCGACATGGTTCGAGTTCTGTTCCTCCACCCGGATTTGG
GCATCGGAGGAGCTGAGCGACTGGTGGTGGATGCCGCTCTGGCACTCAAG
GAGCGGGGTCACCAGGTTAGCTTCCTAACGAATCACCACGACAGCACGCA
CTGCTTCAAGGAGACGGCGGACGGCACTTTTCCGGTCCACGTAGTGGGCG
ACTGGTTGCCACGCGGGCTCTTCGGAAGATTCTATGCCATCTGTGCCTAT
CTGCGCATGCTCTATGCGGCGATCTACGCCAGTTTTTTTATGCCCCAGCG
GGAGCAAGTGGACGTGGTGGTGTGCGACCTAATCTCTGTGTGCATTCCAG
TTCTCCGCTTCGCCCCTCATCGTCCGAAGGTTCTATTCTACTGCCACTTT
CCGGATCAGCTTCTCAGCAGCCGTGAAGGACTGCTAAAGCGGCTGTACCG
CCTGCCCATCAACTGGCTGGAGGAGCACACGATCGGTCTAGCAGACAAGG
TGCTGGTCAACTCCAAATTTACGCTACGTGTCTTCCAGGACACCTTTCGC
CGACTGAGCACGGTGCCGGATGTGCTGTATCCTTCACTGCACACCCAGTA
CTTTGACCAGATGCAGAAAAAGCTAGAACAGCGGTCTGCTTTACTGGACG
AGCCAGTGCATCCGCGAGTACCACTCAACGCCTTTATCTATCTGGACATC
AATCGCTACGAGCGCAAGAAGAACCACGCCCTTGCCTTACATTCCCTGCG
CCTTCTGGGCGACATGCTGCCCGCCACGGACTTCAAGCGCTGTCGCCTGA
TCATCGCCGGGGGTTACGACACCAGATGCATGGAAAATGTGGAGCACTTC
GCGGAGCTGGAGCACCTTACGGAGGAGTTGAAACTTCAGGATCACGTTGT
GCTGCTACGCTCGCCTACCGACGAGGAGAAATGTCGCCTGCTCTTTGCCG
CTCACTGTCTGCTGTATACGCCAGAGAACGAGCACTTCGGCATTGTGCCG
CTGGAGGGCATGTACTGCTCGAAGCCAGTCGTGGCATTAAACAGCGGCGG
ACCCACTGAAACGGTGGTGAGCACTTCCACTGGCTTTCTGTGCGAAAAGA
CCGAGAAGAGCTTTGGTGGAGCAATGCTCCAGCTTTTCCGGGACGAGCAG
CTGCGTGTAAAGATGGGAGACCAGGGTCACAAACGGGTGCAGCAAAAGTT
CTCTTTCCAAGCATTCGCAGATCGGCTGAACGGCATTATTAGAGATCTTG
TTCCTATCTCCAGGGAGTCGAGTGCTAAGAAAAATAAATAAAAGCTTTCT
AGACCAT
BS13074.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1291-RA | 1275 | CG1291-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1291-RA | 1477 | CG1291-RA | 184..1461 | 16..1293 | 6390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3143991..3145268 | 16..1293 | 6390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:42:12 has no hits.
BS13074.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:33 Download gff for
BS13074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-RA | 1..1275 | 17..1291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:30 Download gff for
BS13074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-RA | 178..1461 | 10..1297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:38 Download gff for
BS13074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-RA | 185..1444 | 17..1276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:33 Download gff for
BS13074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-RA | 178..1461 | 10..1297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:30 Download gff for
BS13074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1291-RA | 185..1444 | 17..1276 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:30 Download gff for
BS13074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3143992..3145251 | 17..1276 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:38 Download gff for
BS13074.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3143992..3145251 | 17..1276 | 100 | | Plus |
BS13074.pep Sequence
Translation from 16 to 1290
> BS13074.pep
MVRVLFLHPDLGIGGAERLVVDAALALKERGHQVSFLTNHHDSTHCFKET
ADGTFPVHVVGDWLPRGLFGRFYAICAYLRMLYAAIYASFFMPQREQVDV
VVCDLISVCIPVLRFAPHRPKVLFYCHFPDQLLSSREGLLKRLYRLPINW
LEEHTIGLADKVLVNSKFTLRVFQDTFRRLSTVPDVLYPSLHTQYFDQMQ
KKLEQRSALLDEPVHPRVPLNAFIYLDINRYERKKNHALALHSLRLLGDM
LPATDFKRCRLIIAGGYDTRCMENVEHFAELEHLTEELKLQDHVVLLRSP
TDEEKCRLLFAAHCLLYTPENEHFGIVPLEGMYCSKPVVALNSGGPTETV
VSTSTGFLCEKTEKSFGGAMLQLFRDEQLRVKMGDQGHKRVQQKFSFQAF
ADRLNGIIRDLVPISRESSAKKNK*
BS13074.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1291-PA | 424 | CG1291-PA | 1..424 | 1..424 | 2232 | 100 | Plus |
| CG11306-PB | 475 | CG11306-PB | 281..414 | 223..356 | 155 | 30.9 | Plus |
| CG11306-PA | 475 | CG11306-PA | 281..414 | 223..356 | 155 | 30.9 | Plus |
