Clone Sequence Records
BS13075.3prime Sequence
738 bp (663 high quality bases) assembled on 2006-10-13
> BS13075.3prime
ATGGTCTAGAAAGCTTTTAGTCATCCTTCTTGGTCTTCGGCTTCTTGGCC
TTTGAATCCTTCACCTTGACGCCAGCGGGTTTGTTCCAGTAGTAGATCAG
CTGGCCCAGAATAACCGAATTGGCAAAGGTAGAGGCAATGAAAGTGAGGA
TGATCATAAAGTCACCAGTCTCCTGGATGGAGGTGAAGATGCGGGCCACC
GATCCTGCAAACATCATGATCACAGTGGCGGCTGACAACTGACCAGTGGA
TCCAGCCTGGTAGTTGGTATACGCCTGAGACAGCTTGCCCACCAGCAGGA
TGGGAATGTTGCAGCTCTGGATGGTGAACAGCACCGACATGGGCGTTAGC
CCCGAATTGAGAACATACATCAGCACGACATATCCCACTAGAAAGAGTCC
CGACTGCGCCTTGCGCCCGTTGAAGAACAAGACCAAGACGGCGATTGTGA
CGGTCTGGATGGCCAGAAAGGTACTGTCGCCCCAGGCACTAAACGGATAG
CCATGCATAAAGTTGTACGACAGGTGGAAGGAGATGGCCAGCAAGTCCAA
CACTACGCCCACAATGTTGATGCCCTCGCCAGACTTGCTGTTAAGGATCT
TCAGCACTTGTGGTACTTTGACCAGCACGGAACCTGCGATAATTGCCAAT
CCCAAGCCCTTGCTCAGCAAAGCCTTGAAGCACGGAACATCTAAAAAGTT
GTGATAGAGGAAGTAGTTATCATAGCACTTCTCGCTCA
BS13075.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3792-PA | 759 | CG3792-RA | 38..759 | 738..17 | 3585 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3792-RA | 1194 | CG3792-RA | 324..1045 | 738..17 | 3595 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:53:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4977747..4978418 | 688..17 | 3345 | 99.9 | Minus |
2L | 23513712 | 2L | 4977635..4977685 | 738..688 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:53:21 has no hits.
BS13075.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:56 Download gff for
BS13075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3792-PA | 39..759 | 17..737 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:54 Download gff for
BS13075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3792-RA | 325..1047 | 13..737 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:20 Download gff for
BS13075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3792-RA | 325..1047 | 13..737 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:20 Download gff for
BS13075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4977636..4977685 | 688..737 | 100 | -> | Minus |
2L | 4977748..4978420 | 13..687 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:54 Download gff for
BS13075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4977636..4977685 | 688..737 | 100 | -> | Minus |
arm_2L | 4977748..4978420 | 13..687 | 99 | | Minus |
BS13075.5prime Sequence
748 bp (666 high quality bases) assembled on 2006-10-13
> BS13075.5prime
GAAGTTATCAGTCGACATGACGGATCTTATCAGGCAGGGTGCTCTGTTCC
TTATGAGCGAGAAGTGCTATGATAACTACTTCCTCTATCACAACTTTTTA
GATGTTCCGTGCTTCAAGGCTTTGCTGAGCAAGGGCTTGGGATTGGCAAT
TATCGCAGGTTCCGTGCTGGTCAAAGTACCACAAGTGCTGAAGATCCTTA
ACAGCAAGTCTGGCGAGGGCATCAACATTGTGGGCGTAGTGTTGGACTTG
CTGGCCATCTCCTTCCACCTGTCGTACAACTTTATGCATGGCTATCCGTT
TAGTGCCTGGGGCGACAGTACCTTTCTGGCCATCCAGACCGTCACAATCG
CCGTCTTGGTCTTGTTCTTCAACGGGCGCAAGGCGCAGTCGGGACTCTTT
CTAGTGGGATATGTCGTGCTGATGTATGTTCTCAATTCGGGGCTAACGCC
CATGTCGGTGCTGTTCACCATCCAGAGCTGCAACATTCCCATCCTGCTGG
TGGGCAAGCTGTCTCAGGCGTATACCAACTACCAGGCTGGATCCACTGGT
CAGTTGTCAGCCGCCACTGTGATCATGATGTTTGCAGGATCGGTGGCCCG
CATCTTCACCTCCATCCAGGAGACTGGTGACTTTATGATCATCCTCACTT
TCATTGCCTCTACCTTTGCCAATTCGGTTATTCTGGGCCAGCTGATCTAC
TACTGGAACAAACCCGCTGGCGTCAAGGTGAAGGATTCAAGGGCCAGA
BS13075.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3792-PA | 759 | CG3792-RA | 1..730 | 17..746 | 3600 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:31:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3792-RA | 1194 | CG3792-RA | 287..1016 | 17..746 | 3620 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:31:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4977747..4978389 | 104..746 | 3185 | 99.7 | Plus |
2L | 23513712 | 2L | 4977598..4977685 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:31:51 has no hits.
BS13075.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:56 Download gff for
BS13075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3792-PA | 1..730 | 17..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:26:37 Download gff for
BS13075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3792-RA | 287..1016 | 17..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:01 Download gff for
BS13075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3792-RA | 287..1016 | 17..747 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:01 Download gff for
BS13075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4977598..4977685 | 17..104 | 100 | -> | Plus |
2L | 4977748..4978389 | 105..747 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:26:37 Download gff for
BS13075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4977598..4977685 | 17..104 | 100 | -> | Plus |
arm_2L | 4977748..4978389 | 105..747 | 99 | | Plus |
BS13075.complete Sequence
791 bp assembled on 2006-11-01
GenBank Submission: FJ637376
> BS13075.complete
GAAGTTATCAGTCGACATGACGGATCTTATCAGGCAGGGTGCTCTGTTCC
TTATGAGCGAGAAGTGCTATGATAACTACTTCCTCTATCACAACTTTTTA
GATGTTCCGTGCTTCAAGGCTTTGCTGAGCAAGGGCTTGGGATTGGCAAT
TATCGCAGGTTCCGTGCTGGTCAAAGTACCACAAGTGCTGAAGATCCTTA
ACAGCAAGTCTGGCGAGGGCATCAACATTGTGGGCGTAGTGTTGGACTTG
CTGGCCATCTCCTTCCACCTGTCGTACAACTTTATGCATGGCTATCCGTT
TAGTGCCTGGGGCGACAGTACCTTTCTGGCCATCCAGACCGTCACAATCG
CCGTCTTGGTCTTGTTCTTCAACGGGCGCAAGGCGCAGTCGGGACTCTTT
CTAGTGGGATATGTCGTGCTGATGTATGTTCTCAATTCGGGGCTAACGCC
CATGTCGGTGCTGTTCACCATCCAGAGCTGCAACATTCCCATCCTGCTGG
TGGGCAAGCTGTCTCAGGCGTATACCAACTACCAGGCTGGATCCACTGGT
CAGTTGTCAGCCGCCACTGTGATCATGATGTTTGCAGGATCGGTGGCCCG
CATCTTCACCTCCATCCAGGAGACTGGTGACTTTATGATCATCCTCACTT
TCATTGCCTCTACCTTTGCCAATTCGGTTATTCTGGGCCAGCTGATCTAC
TACTGGAACAAACCCGCTGGCGTCAAGGTGAAGGATTCAAAGGCCAAGAA
GCCGAAGACCAAGAAGGATGACTAAAAGCTTTCTAGACCAT
BS13075.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3792-RA | 759 | CG3792-PA | 1..759 | 17..775 | 3780 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3792-RA | 1194 | CG3792-RA | 287..1045 | 17..775 | 3780 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4977747..4978418 | 104..775 | 3345 | 99.9 | Plus |
2L | 23513712 | 2L | 4977598..4977685 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:45:18 has no hits.
BS13075.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:18 Download gff for
BS13075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3792-RA | 1..759 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:13 Download gff for
BS13075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3792-RA | 275..1035 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:08 Download gff for
BS13075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3792-RA | 287..1043 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:18 Download gff for
BS13075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3792-RA | 275..1035 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:34 Download gff for
BS13075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3792-RA | 287..1043 | 17..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:34 Download gff for
BS13075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4977598..4977685 | 17..104 | 100 | -> | Plus |
2L | 4977748..4978416 | 105..773 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:08 Download gff for
BS13075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4977598..4977685 | 17..104 | 100 | -> | Plus |
arm_2L | 4977748..4978416 | 105..773 | 99 | | Plus |
BS13075.pep Sequence
Translation from 16 to 774
> BS13075.pep
MTDLIRQGALFLMSEKCYDNYFLYHNFLDVPCFKALLSKGLGLAIIAGSV
LVKVPQVLKILNSKSGEGINIVGVVLDLLAISFHLSYNFMHGYPFSAWGD
STFLAIQTVTIAVLVLFFNGRKAQSGLFLVGYVVLMYVLNSGLTPMSVLF
TIQSCNIPILLVGKLSQAYTNYQAGSTGQLSAATVIMMFAGSVARIFTSI
QETGDFMIILTFIASTFANSVILGQLIYYWNKPAGVKVKDSKAKKPKTKK
DD*
BS13075.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3792-PA | 252 | CG3792-PA | 1..252 | 1..252 | 1272 | 100 | Plus |
CG1265-PB | 221 | CG1265-PB | 25..217 | 41..232 | 175 | 24.5 | Plus |