Clone BS13075 Report

Search the DGRC for BS13075

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG3792-RA
Protein status:BS13075.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13075.3prime Sequence

738 bp (663 high quality bases) assembled on 2006-10-13

> BS13075.3prime
ATGGTCTAGAAAGCTTTTAGTCATCCTTCTTGGTCTTCGGCTTCTTGGCC
TTTGAATCCTTCACCTTGACGCCAGCGGGTTTGTTCCAGTAGTAGATCAG
CTGGCCCAGAATAACCGAATTGGCAAAGGTAGAGGCAATGAAAGTGAGGA
TGATCATAAAGTCACCAGTCTCCTGGATGGAGGTGAAGATGCGGGCCACC
GATCCTGCAAACATCATGATCACAGTGGCGGCTGACAACTGACCAGTGGA
TCCAGCCTGGTAGTTGGTATACGCCTGAGACAGCTTGCCCACCAGCAGGA
TGGGAATGTTGCAGCTCTGGATGGTGAACAGCACCGACATGGGCGTTAGC
CCCGAATTGAGAACATACATCAGCACGACATATCCCACTAGAAAGAGTCC
CGACTGCGCCTTGCGCCCGTTGAAGAACAAGACCAAGACGGCGATTGTGA
CGGTCTGGATGGCCAGAAAGGTACTGTCGCCCCAGGCACTAAACGGATAG
CCATGCATAAAGTTGTACGACAGGTGGAAGGAGATGGCCAGCAAGTCCAA
CACTACGCCCACAATGTTGATGCCCTCGCCAGACTTGCTGTTAAGGATCT
TCAGCACTTGTGGTACTTTGACCAGCACGGAACCTGCGATAATTGCCAAT
CCCAAGCCCTTGCTCAGCAAAGCCTTGAAGCACGGAACATCTAAAAAGTT
GTGATAGAGGAAGTAGTTATCATAGCACTTCTCGCTCA

BS13075.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3792-PA 759 CG3792-RA 38..759 738..17 3585 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3792-RA 1194 CG3792-RA 324..1045 738..17 3595 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4977747..4978418 688..17 3345 99.9 Minus
2L 23513712 2L 4977635..4977685 738..688 255 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:53:21 has no hits.

BS13075.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:56 Download gff for BS13075.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3792-PA 39..759 17..737 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:54 Download gff for BS13075.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3792-RA 325..1047 13..737 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:20 Download gff for BS13075.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3792-RA 325..1047 13..737 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:20 Download gff for BS13075.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4977636..4977685 688..737 100 -> Minus
2L 4977748..4978420 13..687 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:54 Download gff for BS13075.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4977636..4977685 688..737 100 -> Minus
arm_2L 4977748..4978420 13..687 99   Minus

BS13075.5prime Sequence

748 bp (666 high quality bases) assembled on 2006-10-13

> BS13075.5prime
GAAGTTATCAGTCGACATGACGGATCTTATCAGGCAGGGTGCTCTGTTCC
TTATGAGCGAGAAGTGCTATGATAACTACTTCCTCTATCACAACTTTTTA
GATGTTCCGTGCTTCAAGGCTTTGCTGAGCAAGGGCTTGGGATTGGCAAT
TATCGCAGGTTCCGTGCTGGTCAAAGTACCACAAGTGCTGAAGATCCTTA
ACAGCAAGTCTGGCGAGGGCATCAACATTGTGGGCGTAGTGTTGGACTTG
CTGGCCATCTCCTTCCACCTGTCGTACAACTTTATGCATGGCTATCCGTT
TAGTGCCTGGGGCGACAGTACCTTTCTGGCCATCCAGACCGTCACAATCG
CCGTCTTGGTCTTGTTCTTCAACGGGCGCAAGGCGCAGTCGGGACTCTTT
CTAGTGGGATATGTCGTGCTGATGTATGTTCTCAATTCGGGGCTAACGCC
CATGTCGGTGCTGTTCACCATCCAGAGCTGCAACATTCCCATCCTGCTGG
TGGGCAAGCTGTCTCAGGCGTATACCAACTACCAGGCTGGATCCACTGGT
CAGTTGTCAGCCGCCACTGTGATCATGATGTTTGCAGGATCGGTGGCCCG
CATCTTCACCTCCATCCAGGAGACTGGTGACTTTATGATCATCCTCACTT
TCATTGCCTCTACCTTTGCCAATTCGGTTATTCTGGGCCAGCTGATCTAC
TACTGGAACAAACCCGCTGGCGTCAAGGTGAAGGATTCAAGGGCCAGA

BS13075.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3792-PA 759 CG3792-RA 1..730 17..746 3600 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3792-RA 1194 CG3792-RA 287..1016 17..746 3620 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4977747..4978389 104..746 3185 99.7 Plus
2L 23513712 2L 4977598..4977685 17..104 440 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:31:51 has no hits.

BS13075.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:56 Download gff for BS13075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3792-PA 1..730 17..747 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:26:37 Download gff for BS13075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3792-RA 287..1016 17..747 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:01 Download gff for BS13075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3792-RA 287..1016 17..747 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:01 Download gff for BS13075.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4977598..4977685 17..104 100 -> Plus
2L 4977748..4978389 105..747 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:26:37 Download gff for BS13075.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4977598..4977685 17..104 100 -> Plus
arm_2L 4977748..4978389 105..747 99   Plus

BS13075.complete Sequence

791 bp assembled on 2006-11-01

GenBank Submission: FJ637376

> BS13075.complete
GAAGTTATCAGTCGACATGACGGATCTTATCAGGCAGGGTGCTCTGTTCC
TTATGAGCGAGAAGTGCTATGATAACTACTTCCTCTATCACAACTTTTTA
GATGTTCCGTGCTTCAAGGCTTTGCTGAGCAAGGGCTTGGGATTGGCAAT
TATCGCAGGTTCCGTGCTGGTCAAAGTACCACAAGTGCTGAAGATCCTTA
ACAGCAAGTCTGGCGAGGGCATCAACATTGTGGGCGTAGTGTTGGACTTG
CTGGCCATCTCCTTCCACCTGTCGTACAACTTTATGCATGGCTATCCGTT
TAGTGCCTGGGGCGACAGTACCTTTCTGGCCATCCAGACCGTCACAATCG
CCGTCTTGGTCTTGTTCTTCAACGGGCGCAAGGCGCAGTCGGGACTCTTT
CTAGTGGGATATGTCGTGCTGATGTATGTTCTCAATTCGGGGCTAACGCC
CATGTCGGTGCTGTTCACCATCCAGAGCTGCAACATTCCCATCCTGCTGG
TGGGCAAGCTGTCTCAGGCGTATACCAACTACCAGGCTGGATCCACTGGT
CAGTTGTCAGCCGCCACTGTGATCATGATGTTTGCAGGATCGGTGGCCCG
CATCTTCACCTCCATCCAGGAGACTGGTGACTTTATGATCATCCTCACTT
TCATTGCCTCTACCTTTGCCAATTCGGTTATTCTGGGCCAGCTGATCTAC
TACTGGAACAAACCCGCTGGCGTCAAGGTGAAGGATTCAAAGGCCAAGAA
GCCGAAGACCAAGAAGGATGACTAAAAGCTTTCTAGACCAT

BS13075.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3792-RA 759 CG3792-PA 1..759 17..775 3780 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3792-RA 1194 CG3792-RA 287..1045 17..775 3780 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4977747..4978418 104..775 3345 99.9 Plus
2L 23513712 2L 4977598..4977685 17..104 440 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:45:18 has no hits.

BS13075.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:18 Download gff for BS13075.complete
Subject Subject Range Query Range Percent Splice Strand
CG3792-RA 1..759 17..775 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:13 Download gff for BS13075.complete
Subject Subject Range Query Range Percent Splice Strand
CG3792-RA 275..1035 17..779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:08 Download gff for BS13075.complete
Subject Subject Range Query Range Percent Splice Strand
CG3792-RA 287..1043 17..773 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:18 Download gff for BS13075.complete
Subject Subject Range Query Range Percent Splice Strand
CG3792-RA 275..1035 17..779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:34 Download gff for BS13075.complete
Subject Subject Range Query Range Percent Splice Strand
CG3792-RA 287..1043 17..773 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:34 Download gff for BS13075.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4977598..4977685 17..104 100 -> Plus
2L 4977748..4978416 105..773 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:08 Download gff for BS13075.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4977598..4977685 17..104 100 -> Plus
arm_2L 4977748..4978416 105..773 99   Plus

BS13075.pep Sequence

Translation from 16 to 774

> BS13075.pep
MTDLIRQGALFLMSEKCYDNYFLYHNFLDVPCFKALLSKGLGLAIIAGSV
LVKVPQVLKILNSKSGEGINIVGVVLDLLAISFHLSYNFMHGYPFSAWGD
STFLAIQTVTIAVLVLFFNGRKAQSGLFLVGYVVLMYVLNSGLTPMSVLF
TIQSCNIPILLVGKLSQAYTNYQAGSTGQLSAATVIMMFAGSVARIFTSI
QETGDFMIILTFIASTFANSVILGQLIYYWNKPAGVKVKDSKAKKPKTKK
DD*

BS13075.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3792-PA 252 CG3792-PA 1..252 1..252 1272 100 Plus
CG1265-PB 221 CG1265-PB 25..217 41..232 175 24.5 Plus