Clone Sequence Records
BS13076.3prime Sequence
666 bp (666 high quality bases) assembled on 2006-10-13
> BS13076.3prime
ATGGTCTAGAAAGCTTCTACGATAACGTGTCCAGAGGTCGGGTGGCCACT
TTGGGCAGGAGTTCCTCCGTAATGCTCGCTATCTGGGCATGTAAATCCTC
TACAGACTGTCTGGCATCGAACTGGTGAAAATAGCTGCCCTCCTTGGAGC
AAATGCGGTTGAATACTTCGGCCACACGACCTTGGAATTCTACTTTCTCA
TAACGCTCTTTGCCGTATTGTCCTCGATGTGTAAGGTCGTTTGGTGGTGC
TCTTAGGTAAAATACAGCATCTGGTTTTATGAGCCCCCTTTCCGGAGCAT
AGCACCAATCAAAGTCTAATCCTTTGGCTGCGCTATATGCCACGCCAGAG
AACGAATATCGATCCACAACCAATGTGGTGCCCTCAAGCAGCTTCTCCTT
CACCTGGTTTATGTGCTCCCAGCGGTTGGCGGAGAACATTAAGTGAATCA
CCTCATCCGGAAGATCCTTGCTGTTCGTTAAATAGGAGTTTATCACCTGA
CCAATGCTGGAACTGCGTTCCGGGAAATTCATGGGCAATGTCGGAATGCC
CTTCGATTTCAAGAGTTCAACCAACAGCCTGCTTTGAGTGGTCTTTCCAC
TTCGATCACATCCTTCAAATATTATCAACGCTCCACGTTTTCCCGCGCTC
ATGTCGACTGATAACT
BS13076.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5757-PA | 636 | CG5757-RA | 1..636 | 652..17 | 3180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5757-RB | 992 | CG5757-RB | 167..802 | 652..17 | 3180 | 100 | Minus |
CG5757-RA | 897 | CG5757-RA | 72..707 | 652..17 | 3180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:55:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18094165..18094532 | 204..571 | 1840 | 100 | Plus |
2R | 25286936 | 2R | 18093913..18094100 | 17..204 | 940 | 100 | Plus |
2R | 25286936 | 2R | 18094584..18094665 | 571..652 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:55:52 has no hits.
BS13076.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:57 Download gff for
BS13076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-PA | 1..636 | 17..652 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:49 Download gff for
BS13076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-RA | 66..707 | 17..662 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:45 Download gff for
BS13076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-RA | 66..707 | 17..662 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:45 Download gff for
BS13076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18093913..18094099 | 17..203 | 100 | <- | Plus |
2R | 18094165..18094531 | 204..570 | 100 | <- | Plus |
2R | 18094584..18094671 | 571..662 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:49 Download gff for
BS13076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13981418..13981604 | 17..203 | 100 | <- | Plus |
arm_2R | 13981670..13982036 | 204..570 | 100 | <- | Plus |
arm_2R | 13982089..13982176 | 571..662 | 95 | | Plus |
BS13076.5prime Sequence
666 bp (666 high quality bases) assembled on 2006-10-13
> BS13076.5prime
GAAGTTATCAGTCGACATGAGCGCGGGAAAACGTGGAGCGTTGATAATAT
TTGAAGGATGTGATCGAAGTGGAAAGACCACTCAAAGCAGGCTGTTGGTT
GAACTCTTGAAATCGAAGGGCATTCCGACATTGCCCATGAATTTCCCGGA
ACGCAGTTCCAGCATTGGTCAGGTGATAAACTCCTATTTAACGAACAGCA
AGGATCTTCCGGATGAGGTGATTCACTTAATGTTCTCCGCCAACCGCTGG
GAGCACATAAACCAGGTGAAGGAGAAGCTGCTTGAGGGCACCACATTGGT
TGTGGATCGATATTCGTTCTCTGGCGTGGCATATAGCGCAGCCAAAGGAT
TAGACTTTGATTGGTGCTATGCTCCGGAAAGGGGGCTCATAAAACCAGAT
GCTGTATTTTACCTAAGAGCACCACCAAACGACCTTACACATCGAGGACA
ATACGGCAAAGAGCGTTATGAGAAAGTAGAATTCCAAGGTCGTGTGGCCG
AAGTATTCAACCGCATTTGCTCCAAGGAGGGCAGCTATTTTCACCAGTTC
GATGCCAGACAGTCTGTAGAGGATTTACATGCCCAGATAGCGAGCATTAC
GGAGGAACTCCTGCCCAAAGTGGCCACCCGACCTCTGGACACGTTATCGT
AGAAGCTTTCTAGACC
BS13076.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5757-PA | 636 | CG5757-RA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5757-RB | 992 | CG5757-RB | 167..802 | 17..652 | 3180 | 100 | Plus |
CG5757-RA | 897 | CG5757-RA | 72..707 | 17..652 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18094165..18094532 | 465..98 | 1840 | 100 | Minus |
2R | 25286936 | 2R | 18093913..18094100 | 652..465 | 940 | 100 | Minus |
2R | 25286936 | 2R | 18094584..18094665 | 98..17 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:04:45 has no hits.
BS13076.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:57 Download gff for
BS13076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-PA | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:40 Download gff for
BS13076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-RA | 66..707 | 7..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:03 Download gff for
BS13076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-RA | 66..707 | 7..652 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:03 Download gff for
BS13076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18094165..18094531 | 99..465 | 100 | <- | Minus |
2R | 18094584..18094671 | 7..98 | 95 | | Minus |
2R | 18093913..18094099 | 466..652 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:40 Download gff for
BS13076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13981418..13981604 | 466..652 | 100 | <- | Minus |
arm_2R | 13981670..13982036 | 99..465 | 100 | <- | Minus |
arm_2R | 13982089..13982176 | 7..98 | 95 | | Minus |
BS13076.complete Sequence
668 bp assembled on 2006-11-01
GenBank Submission: FJ637377
> BS13076.complete
GAAGTTATCAGTCGACATGAGCGCGGGAAAACGTGGAGCGTTGATAATAT
TTGAAGGATGTGATCGAAGTGGAAAGACCACTCAAAGCAGGCTGTTGGTT
GAACTCTTGAAATCGAAGGGCATTCCGACATTGCCCATGAATTTCCCGGA
ACGCAGTTCCAGCATTGGTCAGGTGATAAACTCCTATTTAACGAACAGCA
AGGATCTTCCGGATGAGGTGATTCACTTAATGTTCTCCGCCAACCGCTGG
GAGCACATAAACCAGGTGAAGGAGAAGCTGCTTGAGGGCACCACATTGGT
TGTGGATCGATATTCGTTCTCTGGCGTGGCATATAGCGCAGCCAAAGGAT
TAGACTTTGATTGGTGCTATGCTCCGGAAAGGGGGCTCATAAAACCAGAT
GCTGTATTTTACCTAAGAGCACCACCAAACGACCTTACACATCGAGGACA
ATACGGCAAAGAGCGTTATGAGAAAGTAGAATTCCAAGGTCGTGTGGCCG
AAGTATTCAACCGCATTTGCTCCAAGGAGGGCAGCTATTTTCACCAGTTC
GATGCCAGACAGTCTGTAGAGGATTTACATGCCCAGATAGCGAGCATTAC
GGAGGAACTCCTGCCCAAAGTGGCCACCCGACCTCTGGACACGTTATCGT
AGAAGCTTTCTAGACCAT
BS13076.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5757-RB | 636 | CG5757-PB | 1..636 | 17..652 | 3180 | 100 | Plus |
CG5757-RA | 636 | CG5757-PA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5757-RB | 992 | CG5757-RB | 167..802 | 17..652 | 3180 | 100 | Plus |
CG5757-RA | 897 | CG5757-RA | 72..707 | 17..652 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18094165..18094532 | 465..98 | 1840 | 100 | Minus |
2R | 25286936 | 2R | 18093913..18094100 | 652..465 | 940 | 100 | Minus |
2R | 25286936 | 2R | 18094584..18094665 | 98..17 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:30:22 has no hits.
BS13076.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:55 Download gff for
BS13076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-RA | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:18 Download gff for
BS13076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-RA | 37..678 | 7..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:00 Download gff for
BS13076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-RA | 72..707 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:55 Download gff for
BS13076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-RA | 37..678 | 7..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:12 Download gff for
BS13076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5757-RA | 72..707 | 17..652 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:12 Download gff for
BS13076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18094584..18094665 | 17..98 | 100 | | Minus |
2R | 18093913..18094099 | 466..652 | 100 | <- | Minus |
2R | 18094165..18094531 | 99..465 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:00 Download gff for
BS13076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13981418..13981604 | 466..652 | 100 | <- | Minus |
arm_2R | 13981670..13982036 | 99..465 | 100 | <- | Minus |
arm_2R | 13982089..13982170 | 17..98 | 100 | | Minus |
BS13076.pep Sequence
Translation from 16 to 651
> BS13076.pep
MSAGKRGALIIFEGCDRSGKTTQSRLLVELLKSKGIPTLPMNFPERSSSI
GQVINSYLTNSKDLPDEVIHLMFSANRWEHINQVKEKLLEGTTLVVDRYS
FSGVAYSAAKGLDFDWCYAPERGLIKPDAVFYLRAPPNDLTHRGQYGKER
YEKVEFQGRVAEVFNRICSKEGSYFHQFDARQSVEDLHAQIASITEELLP
KVATRPLDTLS*
BS13076.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5757-PB | 211 | CG5757-PB | 1..211 | 1..211 | 1095 | 100 | Plus |
CG5757-PA | 211 | CG5757-PA | 1..211 | 1..211 | 1095 | 100 | Plus |