Clone BS13076 Report

Search the DGRC for BS13076

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG5757-RA
Protein status:BS13076.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13076.3prime Sequence

666 bp (666 high quality bases) assembled on 2006-10-13

> BS13076.3prime
ATGGTCTAGAAAGCTTCTACGATAACGTGTCCAGAGGTCGGGTGGCCACT
TTGGGCAGGAGTTCCTCCGTAATGCTCGCTATCTGGGCATGTAAATCCTC
TACAGACTGTCTGGCATCGAACTGGTGAAAATAGCTGCCCTCCTTGGAGC
AAATGCGGTTGAATACTTCGGCCACACGACCTTGGAATTCTACTTTCTCA
TAACGCTCTTTGCCGTATTGTCCTCGATGTGTAAGGTCGTTTGGTGGTGC
TCTTAGGTAAAATACAGCATCTGGTTTTATGAGCCCCCTTTCCGGAGCAT
AGCACCAATCAAAGTCTAATCCTTTGGCTGCGCTATATGCCACGCCAGAG
AACGAATATCGATCCACAACCAATGTGGTGCCCTCAAGCAGCTTCTCCTT
CACCTGGTTTATGTGCTCCCAGCGGTTGGCGGAGAACATTAAGTGAATCA
CCTCATCCGGAAGATCCTTGCTGTTCGTTAAATAGGAGTTTATCACCTGA
CCAATGCTGGAACTGCGTTCCGGGAAATTCATGGGCAATGTCGGAATGCC
CTTCGATTTCAAGAGTTCAACCAACAGCCTGCTTTGAGTGGTCTTTCCAC
TTCGATCACATCCTTCAAATATTATCAACGCTCCACGTTTTCCCGCGCTC
ATGTCGACTGATAACT

BS13076.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5757-PA 636 CG5757-RA 1..636 652..17 3180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5757-RB 992 CG5757-RB 167..802 652..17 3180 100 Minus
CG5757-RA 897 CG5757-RA 72..707 652..17 3180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18094165..18094532 204..571 1840 100 Plus
2R 25286936 2R 18093913..18094100 17..204 940 100 Plus
2R 25286936 2R 18094584..18094665 571..652 410 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:55:52 has no hits.

BS13076.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:57 Download gff for BS13076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5757-PA 1..636 17..652 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:49 Download gff for BS13076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5757-RA 66..707 17..662 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:45 Download gff for BS13076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5757-RA 66..707 17..662 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:45 Download gff for BS13076.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18093913..18094099 17..203 100 <- Plus
2R 18094165..18094531 204..570 100 <- Plus
2R 18094584..18094671 571..662 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:49 Download gff for BS13076.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13981418..13981604 17..203 100 <- Plus
arm_2R 13981670..13982036 204..570 100 <- Plus
arm_2R 13982089..13982176 571..662 95   Plus

BS13076.5prime Sequence

666 bp (666 high quality bases) assembled on 2006-10-13

> BS13076.5prime
GAAGTTATCAGTCGACATGAGCGCGGGAAAACGTGGAGCGTTGATAATAT
TTGAAGGATGTGATCGAAGTGGAAAGACCACTCAAAGCAGGCTGTTGGTT
GAACTCTTGAAATCGAAGGGCATTCCGACATTGCCCATGAATTTCCCGGA
ACGCAGTTCCAGCATTGGTCAGGTGATAAACTCCTATTTAACGAACAGCA
AGGATCTTCCGGATGAGGTGATTCACTTAATGTTCTCCGCCAACCGCTGG
GAGCACATAAACCAGGTGAAGGAGAAGCTGCTTGAGGGCACCACATTGGT
TGTGGATCGATATTCGTTCTCTGGCGTGGCATATAGCGCAGCCAAAGGAT
TAGACTTTGATTGGTGCTATGCTCCGGAAAGGGGGCTCATAAAACCAGAT
GCTGTATTTTACCTAAGAGCACCACCAAACGACCTTACACATCGAGGACA
ATACGGCAAAGAGCGTTATGAGAAAGTAGAATTCCAAGGTCGTGTGGCCG
AAGTATTCAACCGCATTTGCTCCAAGGAGGGCAGCTATTTTCACCAGTTC
GATGCCAGACAGTCTGTAGAGGATTTACATGCCCAGATAGCGAGCATTAC
GGAGGAACTCCTGCCCAAAGTGGCCACCCGACCTCTGGACACGTTATCGT
AGAAGCTTTCTAGACC

BS13076.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5757-PA 636 CG5757-RA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5757-RB 992 CG5757-RB 167..802 17..652 3180 100 Plus
CG5757-RA 897 CG5757-RA 72..707 17..652 3180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18094165..18094532 465..98 1840 100 Minus
2R 25286936 2R 18093913..18094100 652..465 940 100 Minus
2R 25286936 2R 18094584..18094665 98..17 410 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:04:45 has no hits.

BS13076.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:57 Download gff for BS13076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5757-PA 1..636 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:40 Download gff for BS13076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5757-RA 66..707 7..652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:03 Download gff for BS13076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5757-RA 66..707 7..652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:03 Download gff for BS13076.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18094165..18094531 99..465 100 <- Minus
2R 18094584..18094671 7..98 95   Minus
2R 18093913..18094099 466..652 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:40 Download gff for BS13076.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13981418..13981604 466..652 100 <- Minus
arm_2R 13981670..13982036 99..465 100 <- Minus
arm_2R 13982089..13982176 7..98 95   Minus

BS13076.complete Sequence

668 bp assembled on 2006-11-01

GenBank Submission: FJ637377

> BS13076.complete
GAAGTTATCAGTCGACATGAGCGCGGGAAAACGTGGAGCGTTGATAATAT
TTGAAGGATGTGATCGAAGTGGAAAGACCACTCAAAGCAGGCTGTTGGTT
GAACTCTTGAAATCGAAGGGCATTCCGACATTGCCCATGAATTTCCCGGA
ACGCAGTTCCAGCATTGGTCAGGTGATAAACTCCTATTTAACGAACAGCA
AGGATCTTCCGGATGAGGTGATTCACTTAATGTTCTCCGCCAACCGCTGG
GAGCACATAAACCAGGTGAAGGAGAAGCTGCTTGAGGGCACCACATTGGT
TGTGGATCGATATTCGTTCTCTGGCGTGGCATATAGCGCAGCCAAAGGAT
TAGACTTTGATTGGTGCTATGCTCCGGAAAGGGGGCTCATAAAACCAGAT
GCTGTATTTTACCTAAGAGCACCACCAAACGACCTTACACATCGAGGACA
ATACGGCAAAGAGCGTTATGAGAAAGTAGAATTCCAAGGTCGTGTGGCCG
AAGTATTCAACCGCATTTGCTCCAAGGAGGGCAGCTATTTTCACCAGTTC
GATGCCAGACAGTCTGTAGAGGATTTACATGCCCAGATAGCGAGCATTAC
GGAGGAACTCCTGCCCAAAGTGGCCACCCGACCTCTGGACACGTTATCGT
AGAAGCTTTCTAGACCAT

BS13076.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5757-RB 636 CG5757-PB 1..636 17..652 3180 100 Plus
CG5757-RA 636 CG5757-PA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5757-RB 992 CG5757-RB 167..802 17..652 3180 100 Plus
CG5757-RA 897 CG5757-RA 72..707 17..652 3180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18094165..18094532 465..98 1840 100 Minus
2R 25286936 2R 18093913..18094100 652..465 940 100 Minus
2R 25286936 2R 18094584..18094665 98..17 410 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:30:22 has no hits.

BS13076.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:55 Download gff for BS13076.complete
Subject Subject Range Query Range Percent Splice Strand
CG5757-RA 1..636 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:18 Download gff for BS13076.complete
Subject Subject Range Query Range Percent Splice Strand
CG5757-RA 37..678 7..652 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:00 Download gff for BS13076.complete
Subject Subject Range Query Range Percent Splice Strand
CG5757-RA 72..707 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:55 Download gff for BS13076.complete
Subject Subject Range Query Range Percent Splice Strand
CG5757-RA 37..678 7..652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:12 Download gff for BS13076.complete
Subject Subject Range Query Range Percent Splice Strand
CG5757-RA 72..707 17..652 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:12 Download gff for BS13076.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18094584..18094665 17..98 100   Minus
2R 18093913..18094099 466..652 100 <- Minus
2R 18094165..18094531 99..465 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:00 Download gff for BS13076.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13981418..13981604 466..652 100 <- Minus
arm_2R 13981670..13982036 99..465 100 <- Minus
arm_2R 13982089..13982170 17..98 100   Minus

BS13076.pep Sequence

Translation from 16 to 651

> BS13076.pep
MSAGKRGALIIFEGCDRSGKTTQSRLLVELLKSKGIPTLPMNFPERSSSI
GQVINSYLTNSKDLPDEVIHLMFSANRWEHINQVKEKLLEGTTLVVDRYS
FSGVAYSAAKGLDFDWCYAPERGLIKPDAVFYLRAPPNDLTHRGQYGKER
YEKVEFQGRVAEVFNRICSKEGSYFHQFDARQSVEDLHAQIASITEELLP
KVATRPLDTLS*

BS13076.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5757-PB 211 CG5757-PB 1..211 1..211 1095 100 Plus
CG5757-PA 211 CG5757-PA 1..211 1..211 1095 100 Plus