Clone Sequence Records
BS13077.3prime Sequence
705 bp (658 high quality bases) assembled on 2006-10-13
> BS13077.3prime
ATGGTCTAGAAAGCTTTCAGTAAGGAGCGTAGTAATTGGCGCGACCACGG
TAACCCATAGCTCTTCGGGCGCCTCGGAAGGTGGAGTGACAGCACGCCCG
GGAGACACGGGCTCCTCGACCCCGGAAGCTGCCGCGTGCGAAACGGTTTG
TGGTGGAGAGTCCAGGGCGGTTTGTGCGCTTCGACATTACCTTTATTTGA
CGCCCCCGGAAGAGGGTTTCGTTCATGGCCAATGCCGTCTCGACAAACTC
CTTGGAACCAAACTCAATGTATGCGAATCCCTTGGGGTGCCCGTCAGCCT
TGTTGCAGAGTATGGTTACTCGGTTGATTGTGCCGCATCCGTGGAAGTGG
GCCTCCAGTTCCTCGGCCGATGCGCCGTAGTCCACATTGCCCACGTAGAC
GGACCGCGTGTCGATTTCCTGCTTCTCCTCAAGAGAAAGCGGGACTGTGG
CCAAGCCGGTGGTAGACCCACCGGCCATTTGTTTGTCCACCTCCGACTGC
ATCTGCTTTATCTTCTCGGCCTCCTCTTCCATCTCCTTAACTCGAGCCTT
TATGGCCTCCAGTTCCGGGTCGATTTGCATGCTGCCCTCCTCCTCGACCT
CTGTGGCGATCTCAGTCTCTTGCTCCCCGTTCGTCTCCTCCAATGACTCC
AGGAGCTGATCCTCGTTCAATGTGATATCTTCTTCGGCCATGTCGACTGA
TAACT
BS13077.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2163-PA | 675 | Pabp2-RA | 1..675 | 691..17 | 3300 | 99.5 | Minus |
CG2163-PB | 675 | Pabp2-RB | 1..675 | 691..17 | 3300 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pabp2-RB | 1378 | CG2163-RB | 407..1081 | 691..17 | 3330 | 99.6 | Minus |
Pabp2-RA | 1869 | CG2163-RA | 407..1081 | 691..17 | 3330 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8132388..8132793 | 594..189 | 2000 | 99.5 | Minus |
2R | 25286936 | 2R | 8132940..8133076 | 192..56 | 685 | 100 | Minus |
2R | 25286936 | 2R | 8132034..8132133 | 691..592 | 485 | 99 | Minus |
2R | 25286936 | 2R | 8133141..8133180 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:30:19 has no hits.
BS13077.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:58 Download gff for
BS13077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2163-PB | 1..675 | 17..691 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:11 Download gff for
BS13077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pabp2-RA | 403..1083 | 11..698 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:27 Download gff for
BS13077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pabp2-RA | 403..1083 | 11..698 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:27 Download gff for
BS13077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8132390..8132791 | 191..592 | 99 | -> | Minus |
2R | 8132030..8132132 | 593..698 | 96 | -> | Minus |
2R | 8132942..8133075 | 57..190 | 100 | -> | Minus |
2R | 8133141..8133182 | 11..56 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:11 Download gff for
BS13077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4019535..4019637 | 593..698 | 96 | -> | Minus |
arm_2R | 4019895..4020296 | 191..592 | 99 | -> | Minus |
arm_2R | 4020447..4020580 | 57..190 | 100 | -> | Minus |
arm_2R | 4020646..4020687 | 11..56 | 91 | | Minus |
BS13077.5prime Sequence
705 bp (683 high quality bases) assembled on 2006-10-13
> BS13077.5prime
GAAGTTATCAGTCGACATGGCCGATGAAGATATCACATTGAACGAGGATC
AGCTCCTGGAGTCATTGGAGGAGACGAACGGGGAGCAAGAGACTGAGATC
GCCACAGAGGTCGAGGAGGAGGGCAGCATGCAAATCGACCCGGAACTGGA
GGCCATAAAGGCTCGAGTTAAGGAGATGGAAGAGGAGGCCGAGAAGATAA
AGCAGATGCAGTCGGAGGTGGACAAACAAATGGCCGGTGGGTCTACCACC
GGCTTGGCCACAGTCCCGCTTTCTCTTGAGGAGAAGCAGGAAATCGACAC
GCGGTCCGTCTACGTGGGCAATGTGGACTACGGCGCATCGGCCGAGGAAC
TGGAGGCCCACTTCCACGGATGCGGCACAATCAACCGAGTAACCATACTC
TGCAACAAGGCTGACGGGCACCCCAAGGGATTCGCATACATTGAGTTTGG
TTCCAAGGAGTTTGTCGAGACGGCATTGGCCATGAACGAAACCCTCTTCC
GGGGGCGTCAAATAAAGGTAATGTCGAAGCGCACAAACCGCCCTGGACTC
TCCACCACAAACCGTTTCGCACGCGGCAGCTTCCGGGGTCGAGGAGCCCG
TGTCTCCCGGGCGTGCTGTCACTCCACCTTCCGAGGCGCCCGAAGAGCTA
TGGGTTACCGTGGTCGCGCCAATTACTACGCTCCTTACTGAAAGCTTTCT
AGACC
BS13077.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2163-PA | 675 | Pabp2-RA | 1..675 | 17..691 | 3325 | 99.7 | Plus |
CG2163-PB | 675 | Pabp2-RB | 1..675 | 17..691 | 3325 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:39:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pabp2-RB | 1378 | CG2163-RB | 407..1081 | 17..691 | 3345 | 99.7 | Plus |
Pabp2-RA | 1869 | CG2163-RA | 407..1081 | 17..691 | 3345 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:39:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8132388..8132793 | 114..519 | 2000 | 99.5 | Plus |
2R | 25286936 | 2R | 8132940..8133076 | 516..652 | 685 | 100 | Plus |
2R | 25286936 | 2R | 8132034..8132133 | 17..116 | 500 | 100 | Plus |
2R | 25286936 | 2R | 8133141..8133180 | 652..691 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:39:27 has no hits.
BS13077.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:58 Download gff for
BS13077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2163-PB | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:56 Download gff for
BS13077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pabp2-RA | 403..1083 | 10..697 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:09 Download gff for
BS13077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pabp2-RA | 403..1083 | 10..697 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:09 Download gff for
BS13077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8132030..8132132 | 10..115 | 97 | -> | Plus |
2R | 8132390..8132791 | 116..517 | 99 | -> | Plus |
2R | 8132942..8133075 | 518..651 | 100 | -> | Plus |
2R | 8133141..8133182 | 652..697 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:56 Download gff for
BS13077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4019535..4019637 | 10..115 | 97 | -> | Plus |
arm_2R | 4019895..4020296 | 116..517 | 99 | -> | Plus |
arm_2R | 4020447..4020580 | 518..651 | 100 | -> | Plus |
arm_2R | 4020646..4020687 | 652..697 | 91 | | Plus |
BS13077.complete Sequence
707 bp assembled on 2006-11-01
GenBank Submission: FJ637378
> BS13077.complete
GAAGTTATCAGTCGACATGGCCGATGAAGATATCACATTGAACGAGGATC
AGCTCCTGGAGTCATTGGAGGAGACGAACGGGGAGCAAGAGACTGAGATC
GCCACAGAGGTCGAGGAGGAGGGCAGCATGCAAATCGACCCGGAACTGGA
GGCCATAAAGGCTCGAGTTAAGGAGATGGAAGAGGAGGCCGAGAAGATAA
AGCAGATGCAGTCGGAGGTGGACAAACAAATGGCCGGTGGGTCTACCACC
GGCTTGGCCACAGTCCCGCTTTCTCTTGAGGAGAAGCAGGAAATCGACAC
GCGGTCCGTCTACGTGGGCAATGTGGACTACGGCGCATCGGCCGAGGAAC
TGGAGGCCCACTTCCACGGATGCGGCACAATCAACCGAGTAACCATACTC
TGCAACAAGGCTGACGGGCACCCCAAGGGATTCGCATACATTGAGTTTGG
TTCCAAGGAGTTTGTCGAGACGGCATTGGCCATGAACGAAACCCTCTTCC
GGGGGCGTCAAATAAAGGTAATGTCGAAGCGCACAAACCGCCCTGGACTC
TCCACCACAAACCGTTTCGCACGCGGCAGCTTCCGGGGTCGAGGAGCCCG
TGTCTCCCGGGCGTGCTGTCACTCCACCTTCCGAGGCGCCCGAAGAGCTA
TGGGTTACCGTGGTCGCGCCAATTACTACGCTCCTTACTGAAAGCTTTCT
AGACCAT
BS13077.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:24:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pabp2-RB | 675 | CG2163-PB | 1..675 | 17..691 | 3345 | 99.7 | Plus |
Pabp2-RA | 675 | CG2163-PA | 1..675 | 17..691 | 3345 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:24:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pabp2-RB | 1378 | CG2163-RB | 407..1081 | 17..691 | 3345 | 99.7 | Plus |
Pabp2-RA | 1869 | CG2163-RA | 407..1081 | 17..691 | 3345 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:24:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8132388..8132793 | 114..519 | 2000 | 99.5 | Plus |
2R | 25286936 | 2R | 8132940..8133076 | 516..652 | 685 | 100 | Plus |
2R | 25286936 | 2R | 8132034..8132133 | 17..116 | 500 | 100 | Plus |
2R | 25286936 | 2R | 8133141..8133180 | 652..691 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:24:29 has no hits.
BS13077.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:08 Download gff for
BS13077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pabp2-RB | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:34 Download gff for
BS13077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pabp2-RB | 421..1101 | 10..697 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:20 Download gff for
BS13077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pabp2-RA | 407..1080 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:09 Download gff for
BS13077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pabp2-RB | 421..1101 | 10..697 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:32 Download gff for
BS13077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pabp2-RA | 407..1080 | 17..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:32 Download gff for
BS13077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8132942..8133075 | 518..651 | 100 | -> | Plus |
2R | 8133141..8133179 | 652..690 | 100 | | Plus |
2R | 8132034..8132132 | 17..115 | 100 | -> | Plus |
2R | 8132390..8132791 | 116..517 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:20 Download gff for
BS13077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4020447..4020580 | 518..651 | 100 | -> | Plus |
arm_2R | 4020646..4020684 | 652..690 | 100 | | Plus |
arm_2R | 4019539..4019637 | 17..115 | 100 | -> | Plus |
arm_2R | 4019895..4020296 | 116..517 | 99 | -> | Plus |
BS13077.pep Sequence
Translation from 16 to 690
> BS13077.pep
MADEDITLNEDQLLESLEETNGEQETEIATEVEEEGSMQIDPELEAIKAR
VKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYV
GNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFV
ETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRAC
CHSTFRGARRAMGYRGRANYYAPY*
BS13077.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pabp2-PB | 224 | CG2163-PB | 1..224 | 1..224 | 1149 | 100 | Plus |
Pabp2-PA | 224 | CG2163-PA | 1..224 | 1..224 | 1149 | 100 | Plus |