Clone BS13077 Report

Search the DGRC for BS13077

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptPabp2-RA
Protein status:BS13077.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13077.3prime Sequence

705 bp (658 high quality bases) assembled on 2006-10-13

> BS13077.3prime
ATGGTCTAGAAAGCTTTCAGTAAGGAGCGTAGTAATTGGCGCGACCACGG
TAACCCATAGCTCTTCGGGCGCCTCGGAAGGTGGAGTGACAGCACGCCCG
GGAGACACGGGCTCCTCGACCCCGGAAGCTGCCGCGTGCGAAACGGTTTG
TGGTGGAGAGTCCAGGGCGGTTTGTGCGCTTCGACATTACCTTTATTTGA
CGCCCCCGGAAGAGGGTTTCGTTCATGGCCAATGCCGTCTCGACAAACTC
CTTGGAACCAAACTCAATGTATGCGAATCCCTTGGGGTGCCCGTCAGCCT
TGTTGCAGAGTATGGTTACTCGGTTGATTGTGCCGCATCCGTGGAAGTGG
GCCTCCAGTTCCTCGGCCGATGCGCCGTAGTCCACATTGCCCACGTAGAC
GGACCGCGTGTCGATTTCCTGCTTCTCCTCAAGAGAAAGCGGGACTGTGG
CCAAGCCGGTGGTAGACCCACCGGCCATTTGTTTGTCCACCTCCGACTGC
ATCTGCTTTATCTTCTCGGCCTCCTCTTCCATCTCCTTAACTCGAGCCTT
TATGGCCTCCAGTTCCGGGTCGATTTGCATGCTGCCCTCCTCCTCGACCT
CTGTGGCGATCTCAGTCTCTTGCTCCCCGTTCGTCTCCTCCAATGACTCC
AGGAGCTGATCCTCGTTCAATGTGATATCTTCTTCGGCCATGTCGACTGA
TAACT

BS13077.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG2163-PA 675 Pabp2-RA 1..675 691..17 3300 99.5 Minus
CG2163-PB 675 Pabp2-RB 1..675 691..17 3300 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
Pabp2-RB 1378 CG2163-RB 407..1081 691..17 3330 99.6 Minus
Pabp2-RA 1869 CG2163-RA 407..1081 691..17 3330 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8132388..8132793 594..189 2000 99.5 Minus
2R 25286936 2R 8132940..8133076 192..56 685 100 Minus
2R 25286936 2R 8132034..8132133 691..592 485 99 Minus
2R 25286936 2R 8133141..8133180 56..17 200 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:30:19 has no hits.

BS13077.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:58 Download gff for BS13077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2163-PB 1..675 17..691 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:11 Download gff for BS13077.3prime
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RA 403..1083 11..698 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:27 Download gff for BS13077.3prime
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RA 403..1083 11..698 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:27 Download gff for BS13077.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8132390..8132791 191..592 99 -> Minus
2R 8132030..8132132 593..698 96 -> Minus
2R 8132942..8133075 57..190 100 -> Minus
2R 8133141..8133182 11..56 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:11 Download gff for BS13077.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4019535..4019637 593..698 96 -> Minus
arm_2R 4019895..4020296 191..592 99 -> Minus
arm_2R 4020447..4020580 57..190 100 -> Minus
arm_2R 4020646..4020687 11..56 91   Minus

BS13077.5prime Sequence

705 bp (683 high quality bases) assembled on 2006-10-13

> BS13077.5prime
GAAGTTATCAGTCGACATGGCCGATGAAGATATCACATTGAACGAGGATC
AGCTCCTGGAGTCATTGGAGGAGACGAACGGGGAGCAAGAGACTGAGATC
GCCACAGAGGTCGAGGAGGAGGGCAGCATGCAAATCGACCCGGAACTGGA
GGCCATAAAGGCTCGAGTTAAGGAGATGGAAGAGGAGGCCGAGAAGATAA
AGCAGATGCAGTCGGAGGTGGACAAACAAATGGCCGGTGGGTCTACCACC
GGCTTGGCCACAGTCCCGCTTTCTCTTGAGGAGAAGCAGGAAATCGACAC
GCGGTCCGTCTACGTGGGCAATGTGGACTACGGCGCATCGGCCGAGGAAC
TGGAGGCCCACTTCCACGGATGCGGCACAATCAACCGAGTAACCATACTC
TGCAACAAGGCTGACGGGCACCCCAAGGGATTCGCATACATTGAGTTTGG
TTCCAAGGAGTTTGTCGAGACGGCATTGGCCATGAACGAAACCCTCTTCC
GGGGGCGTCAAATAAAGGTAATGTCGAAGCGCACAAACCGCCCTGGACTC
TCCACCACAAACCGTTTCGCACGCGGCAGCTTCCGGGGTCGAGGAGCCCG
TGTCTCCCGGGCGTGCTGTCACTCCACCTTCCGAGGCGCCCGAAGAGCTA
TGGGTTACCGTGGTCGCGCCAATTACTACGCTCCTTACTGAAAGCTTTCT
AGACC

BS13077.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG2163-PA 675 Pabp2-RA 1..675 17..691 3325 99.7 Plus
CG2163-PB 675 Pabp2-RB 1..675 17..691 3325 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Pabp2-RB 1378 CG2163-RB 407..1081 17..691 3345 99.7 Plus
Pabp2-RA 1869 CG2163-RA 407..1081 17..691 3345 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8132388..8132793 114..519 2000 99.5 Plus
2R 25286936 2R 8132940..8133076 516..652 685 100 Plus
2R 25286936 2R 8132034..8132133 17..116 500 100 Plus
2R 25286936 2R 8133141..8133180 652..691 200 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:39:27 has no hits.

BS13077.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:58 Download gff for BS13077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2163-PB 1..675 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:56 Download gff for BS13077.5prime
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RA 403..1083 10..697 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:09 Download gff for BS13077.5prime
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RA 403..1083 10..697 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:09 Download gff for BS13077.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8132030..8132132 10..115 97 -> Plus
2R 8132390..8132791 116..517 99 -> Plus
2R 8132942..8133075 518..651 100 -> Plus
2R 8133141..8133182 652..697 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:56 Download gff for BS13077.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4019535..4019637 10..115 97 -> Plus
arm_2R 4019895..4020296 116..517 99 -> Plus
arm_2R 4020447..4020580 518..651 100 -> Plus
arm_2R 4020646..4020687 652..697 91   Plus

BS13077.complete Sequence

707 bp assembled on 2006-11-01

GenBank Submission: FJ637378

> BS13077.complete
GAAGTTATCAGTCGACATGGCCGATGAAGATATCACATTGAACGAGGATC
AGCTCCTGGAGTCATTGGAGGAGACGAACGGGGAGCAAGAGACTGAGATC
GCCACAGAGGTCGAGGAGGAGGGCAGCATGCAAATCGACCCGGAACTGGA
GGCCATAAAGGCTCGAGTTAAGGAGATGGAAGAGGAGGCCGAGAAGATAA
AGCAGATGCAGTCGGAGGTGGACAAACAAATGGCCGGTGGGTCTACCACC
GGCTTGGCCACAGTCCCGCTTTCTCTTGAGGAGAAGCAGGAAATCGACAC
GCGGTCCGTCTACGTGGGCAATGTGGACTACGGCGCATCGGCCGAGGAAC
TGGAGGCCCACTTCCACGGATGCGGCACAATCAACCGAGTAACCATACTC
TGCAACAAGGCTGACGGGCACCCCAAGGGATTCGCATACATTGAGTTTGG
TTCCAAGGAGTTTGTCGAGACGGCATTGGCCATGAACGAAACCCTCTTCC
GGGGGCGTCAAATAAAGGTAATGTCGAAGCGCACAAACCGCCCTGGACTC
TCCACCACAAACCGTTTCGCACGCGGCAGCTTCCGGGGTCGAGGAGCCCG
TGTCTCCCGGGCGTGCTGTCACTCCACCTTCCGAGGCGCCCGAAGAGCTA
TGGGTTACCGTGGTCGCGCCAATTACTACGCTCCTTACTGAAAGCTTTCT
AGACCAT

BS13077.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
Pabp2-RB 675 CG2163-PB 1..675 17..691 3345 99.7 Plus
Pabp2-RA 675 CG2163-PA 1..675 17..691 3345 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
Pabp2-RB 1378 CG2163-RB 407..1081 17..691 3345 99.7 Plus
Pabp2-RA 1869 CG2163-RA 407..1081 17..691 3345 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8132388..8132793 114..519 2000 99.5 Plus
2R 25286936 2R 8132940..8133076 516..652 685 100 Plus
2R 25286936 2R 8132034..8132133 17..116 500 100 Plus
2R 25286936 2R 8133141..8133180 652..691 200 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:24:29 has no hits.

BS13077.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:08 Download gff for BS13077.complete
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RB 1..675 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:34 Download gff for BS13077.complete
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RB 421..1101 10..697 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:20 Download gff for BS13077.complete
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RA 407..1080 17..690 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:09 Download gff for BS13077.complete
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RB 421..1101 10..697 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:32 Download gff for BS13077.complete
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RA 407..1080 17..690 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:32 Download gff for BS13077.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8132942..8133075 518..651 100 -> Plus
2R 8133141..8133179 652..690 100   Plus
2R 8132034..8132132 17..115 100 -> Plus
2R 8132390..8132791 116..517 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:20 Download gff for BS13077.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4020447..4020580 518..651 100 -> Plus
arm_2R 4020646..4020684 652..690 100   Plus
arm_2R 4019539..4019637 17..115 100 -> Plus
arm_2R 4019895..4020296 116..517 99 -> Plus

BS13077.pep Sequence

Translation from 16 to 690

> BS13077.pep
MADEDITLNEDQLLESLEETNGEQETEIATEVEEEGSMQIDPELEAIKAR
VKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYV
GNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFV
ETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRAC
CHSTFRGARRAMGYRGRANYYAPY*

BS13077.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
Pabp2-PB 224 CG2163-PB 1..224 1..224 1149 100 Plus
Pabp2-PA 224 CG2163-PA 1..224 1..224 1149 100 Plus