Clone Sequence Records
BS13078.complete Sequence
1583 bp assembled on 2009-12-07
GenBank Submission: KX802219
> BS13078.complete
GAAGTTATCAGTCGACATGTCATCCTGGATCACAGGACTGGCGGACAAGG
CCGAAAACATTTTGAACAAGCTGGACCAAAATGCGGCAACGGCCCTGCAG
ACAGAGAACGCCACAGGTTCAGCGGATCCCATGCGTAGGAGCATGACGAG
CAGCACCCAATCACTGTCCACATCCCTGAAGTCCACTCTGTCGCCAGTGC
GGCGCTCGGGGGCCAATAGCTCATCAAGTGTAAAAAGCGATGGCGGGGTC
TCCGTGGTCACTAAGGACATGCGCCAAAAGATGACCACGTCGGCCAGTTT
CTCCAACAGTCCCGACATATCCGCCAACTCAATGGACACAAATGAATTGG
CTGCCTTCAAGATCGCCCTGAATGAAATCACGGCCGAAAGAGATGAACTG
CGTCTGCGCTTGGAAGATCTTAATAACGAAACCGAAAAGTTTGATCTGCA
TCAACACACCCAGGTGCTGGAAGCTCTGGTTAAAAGTCTGTCCGAAGAGC
GGGACAAGGCGGTTCATGACTACAATGAGGCCCAGGCAGCTAACATGGCG
TATGTGCACTCCATCTCCGAACTGGAAACCAATCTGGCCAAGTTGCAGCA
GGAATACATAAGCGCCGCTCACAAATTGCAAATGCAAACAAAGGAAACGG
AGCAGCAGCGCCAGGAGCTTCAGGAATACCGTATCAAGGCTCAGCGAGCT
CTGCAAGCAAAGGATTCCCTCATCGCAGAGTTGAAGGCGAAGCCCACGGA
GGAGGGCGCAGATCCAAACCTGGTGTCCAAGGACAGTGAAACGCGTTTTC
TGCAAATTGAACACGAGTCACTTAAGCAAGAACTAGAGCATGCCAACGAG
GAACTGCAAAAGGCGCGCTTGCAGCTGGACGATTACGTTTCCCAGGAAAG
ACAACGACAGGTGGAACTAAGCTCTGCCCGCCAACGCGAGGAAACACTAG
CAAAGGAGTTGCGACAGGCAAGGGAACACAGTGTGACCTCCGAATCCGAT
CAGCGAGTGCTCACGCAGGAACTGGCCTCACTGCGGCAGCAACTTAGTAA
CCAAATGGCTGCTGCCGCCACTCGACTCCAGGAGCGGGAGCAGCAGCTTC
AGCAGATGCGTCAGCGATTGAGCGAGGAAGCCAACACGGGAGCCAAGAGC
GATTACGAGACTCGGCTAAAGGCTTTAACCCAATCACTGGTCGAACGTCA
AAGTCTTCTGGAAAGAGTTACGAGTGAGAGAAATGCCCTGCGACTACAGC
ACGAAAAGGCACAGACGCAGCTACAGCAAAACATGCACTTGGTGGAAATG
GAGAGCCAAAGGGGCAGCTCCCGCCATACTATGCTCAACAGCACAGATGA
TGTCAAAGCACAATTCCCGCTTCTCATGCATCCAAGTCCATTCGATAATC
GTGTGGCACGACGCTTCAAGCGAGCCCTTCGCCAGGCGGACTCCATGGGT
ATTCGGGTGGGAACGTTTCTGCGTCGCTATCCCATGATGCGGGTCTCTGT
GATCGTCTACGTGGCCCTACTACATCTGTGGGTCATGTTTGTGCTGCTCT
CCACTACACCAAACTAAAAGCTTTCTAGACCAT
BS13078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:07:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Golgin84-RA | 1551 | CG17785-PA | 1..1551 | 17..1567 | 7755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Golgin84-RA | 1814 | CG17785-RA | 63..1613 | 17..1567 | 7755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:07:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24356541..24357876 | 1352..17 | 6680 | 100 | Minus |
| 3R | 32079331 | 3R | 24356271..24356486 | 1567..1352 | 1080 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:07:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..2908 | 1073..1349 | 148 | 55.7 | Plus |
BS13078.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:53 Download gff for
BS13078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Golgin84-RA | 48..1596 | 17..1565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:31 Download gff for
BS13078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Golgin84-RA | 63..1611 | 17..1565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:32 Download gff for
BS13078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Golgin84-RA | 48..1596 | 17..1565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:30 Download gff for
BS13078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Golgin84-RA | 63..1611 | 17..1565 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:30 Download gff for
BS13078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24356273..24356485 | 1353..1565 | 100 | <- | Minus |
| 3R | 24356541..24357876 | 17..1352 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:31 Download gff for
BS13078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20181995..20182207 | 1353..1565 | 100 | <- | Minus |
| arm_3R | 20182263..20183598 | 17..1352 | 100 | | Minus |
BS13078.3prime Sequence
697 bp (619 high quality bases) assembled on 2006-10-13
> BS13078.3prime
ATGGTCTAGAAAGCTTTTAGTTTGGTGTAGTGGAGAGCAGCACAAACATG
ACCCACAGATGTAGTAGGGCCACGTAGACGATCACAGAGACCCGCATCAT
GGGATAGCGACGCAGAAACGTTCCCACCCGAATACCCATGGAGTCCGCCT
GGCGAAGGGCTCGCTTGAAGCGTCGTGCCACACGATTATCGAATGGACTT
GGATGCATGAGAAGCGGGAATTGTGCTTTGACATCATCTGTGCTGTTGAG
CATAGTATGGCGGGAGCTGCCCCTTTGGCTCTCCATTTCCACCAAGTGCA
TGTTTTGCTGTAGCTGCGTCTGTGCCTTTTCGTGCTGTAGTCGCAGGGCA
TTTCTCTCACTCGTAACTCTTTCCAGAAGACTTTGACGTTCGACCAGTGA
TTGGGTTAAAGCCTTTAGCCGAGTCTCGTAATCGCTCTTGGCTCCCGTGT
TGGCTTCCTCGCTCAATCGCTGACGCATCTGCTGAAGCTGCTGCTCCCGC
TCCTGGAGTCGAGTGGCGGCAGCAGCCATTTGGTTACTAAGTTGCTGCCG
CAGTGAGGCCAGTTCCTGCGTGAGCACTCGCTGATCGGATTCGGAGGTCA
CACTGTGTTCCCTTGCCTGTCGCAACTCCTTTGCTAGTGTTTCCTCGCGT
TGGCGGGCAGAGCTTAGTTCCACCTGTCGTTGTCTTTCCTGGGAAAC
BS13078.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:22:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17785-PA | 1551 | Golgin84-RA | 871..1551 | 697..17 | 3405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Golgin84-RA | 1814 | CG17785-RA | 933..1613 | 697..17 | 3405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24356541..24357006 | 232..697 | 2330 | 100 | Plus |
| 3R | 32079331 | 3R | 24356271..24356486 | 17..232 | 1080 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 18:10:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..2908 | 511..235 | 148 | 55.7 | Minus |
BS13078.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:59 Download gff for
BS13078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17785-PA | 871..1551 | 17..697 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:19:02 Download gff for
BS13078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Golgin84-RA | 933..1613 | 17..697 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:36:33 Download gff for
BS13078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Golgin84-RA | 933..1613 | 17..697 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:36:33 Download gff for
BS13078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24356271..24356485 | 17..231 | 100 | <- | Plus |
| 3R | 24356541..24357006 | 232..697 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:19:02 Download gff for
BS13078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20181993..20182207 | 17..231 | 100 | <- | Plus |
| arm_3R | 20182263..20182728 | 232..697 | 100 | | Plus |
BS13078.5prime Sequence
748 bp (683 high quality bases) assembled on 2006-10-13
> BS13078.5prime
GAAGTTATCAGTCGACATGTCATCCTGGATCACAGGACTGGCGGACAAGG
CCGAAAACATTTTGAACAAGCTGGACCAAAATGCGGCAACGGCCCTGCAG
ACAGAGAACGCCACAGGTTCAGCGGATCCCATGCGTAGGAGCATGACGAG
CAGCACCCAATCACTGTCCACATCCCTGAAGTCCACTCTGTCGCCAGTGC
GGCGCTCGGGGGCCAATAGCTCATCAAGTGTAAAAAGCGATGGCGGGGTC
TCCGTGGTCACTAAGGACATGCGCCAAAAGATGACCACGTCGGCCAGTTT
CTCCAACAGTCCCGACATATCCGCCAACTCAATGGACACAAATGAATTGG
CTGCCTTCAAGATCGCCCTGAATGAAATCACGGCCGAAAGAGATGAACTG
CGTCTGCGCTTGGAAGATCTTAATAACGAAACCGAAAAGTTTGATCTGCA
TCAACACACCCAGGTGCTGGAAGCTCTGGTTAAAAGTCTGTCCGAAGAGC
GGGACAAGGCGGTTCATGACTACAATGAGGCCCAGGCAGCTAACATGGCG
TATGTGCACTCCATCTCCGAACTGGAAACCAATCTGGCCAAGTTGCAGCA
GGAATACATAAGCGCCGCTCACAAATTGCAAATGCAAACAAAGGAAACGG
AGCAGCAGCGCCAGGAGCTTCAGGAATACCGTATCAAGGCTCAGCGAGCT
CTGCAAGCAAGGGATTCCCTCATCGCAAAGTTGAAAGCGAAACCCACG
BS13078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:22:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17785-PA | 1551 | Golgin84-RA | 1..732 | 17..748 | 3560 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:48:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Golgin84-RA | 1814 | CG17785-RA | 63..794 | 17..748 | 3600 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:47:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24357145..24357876 | 748..17 | 3600 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:47:59 has no hits.
BS13078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:59 Download gff for
BS13078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17785-PA | 1..732 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:49:01 Download gff for
BS13078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Golgin84-RA | 63..794 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:28:46 Download gff for
BS13078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Golgin84-RA | 63..794 | 17..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:28:46 Download gff for
BS13078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24357145..24357876 | 17..748 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:49:01 Download gff for
BS13078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20182867..20183598 | 17..748 | 99 | | Minus |
BS13078.pep Sequence
Translation from 16 to 1566
> BS13078.pep
MSSWITGLADKAENILNKLDQNAATALQTENATGSADPMRRSMTSSTQSL
STSLKSTLSPVRRSGANSSSSVKSDGGVSVVTKDMRQKMTTSASFSNSPD
ISANSMDTNELAAFKIALNEITAERDELRLRLEDLNNETEKFDLHQHTQV
LEALVKSLSEERDKAVHDYNEAQAANMAYVHSISELETNLAKLQQEYISA
AHKLQMQTKETEQQRQELQEYRIKAQRALQAKDSLIAELKAKPTEEGADP
NLVSKDSETRFLQIEHESLKQELEHANEELQKARLQLDDYVSQERQRQVE
LSSARQREETLAKELRQAREHSVTSESDQRVLTQELASLRQQLSNQMAAA
ATRLQEREQQLQQMRQRLSEEANTGAKSDYETRLKALTQSLVERQSLLER
VTSERNALRLQHEKAQTQLQQNMHLVEMESQRGSSRHTMLNSTDDVKAQF
PLLMHPSPFDNRVARRFKRALRQADSMGIRVGTFLRRYPMMRVSVIVYVA
LLHLWVMFVLLSTTPN*
BS13078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Golgin84-PA | 516 | CG17785-PA | 1..516 | 1..516 | 2530 | 100 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 534..1005 | 8..431 | 195 | 20.3 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 537..1008 | 8..431 | 195 | 20.3 | Plus |
| CLIP-190-PP | 1623 | CG5020-PP | 559..1030 | 8..431 | 195 | 20.3 | Plus |
| CLIP-190-PC | 1652 | CG5020-PC | 588..1059 | 8..431 | 195 | 20.3 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 915..1421 | 5..475 | 167 | 19.9 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 918..1424 | 5..475 | 167 | 19.9 | Plus |
| CLIP-190-PP | 1623 | CG5020-PP | 940..1446 | 5..475 | 167 | 19.9 | Plus |
