Clone BS13079 Report

Search the DGRC for BS13079

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptRabX6-RA
Protein status:BS13079.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13079.3prime Sequence

655 bp (651 high quality bases) assembled on 2006-10-13

> BS13079.3prime
ATGGTCTAGAAAGCTTCTAGCAGCCGCAGGAGGAGGCGTCCTCCTCGTTG
GTCGCCGCGCCGCTGCTCGCAGTGTCCACCTGGAAGCTCTTGTGCTCCAG
TGCCTGCAGTTCCATTTTGGAGCGATTGGCGTGGACCAGTTGCCTAGAGA
TGTCACGGAACATCTCCTCCACACCGGCGCCGCTGCGACAGGAGGTCTTG
TACGTGGCACTGATCAGTGAGTGGCACTGCTCGCAGAAGGCCTCCACTTC
CTCATCGCTGACCTCCGGCTCCCTGCCATCCAGATCGCTCTTATTGCCAC
AGATGAAGATCTTGGCATTCTCTGCATAGGTCACAATGTCCAGCAAGTGC
TGCGACAGCGAGTGGAACGAAGCGGCGTTGTCCAAAGCAAAGACCAGGAT
GGCTCCCTCGGCGAACTTGTAGTACGAGGATGTGACCGAGGCCACACGCT
CCATGCCACCGGTGTCCCAGAGTTGGAGCTTGATCTGCTTTTCATTCACA
CTGTATTCCCTATCGATGTGGTCCAGTCCCAACGTGGATTTCCTGTCCGT
ATCCGTGATGAAGGTGTTGGTGGCGAAGCGCCGGAACAGGGAGCTCTTGC
CCACTCCGTAGTCGCCGCACAGGATCACCTTTTGTTTGGGTATGCGCATC
GTGGC

BS13079.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG12015-PA 642 RabX6-RA 4..642 655..17 3195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
RabX6-RB 1286 CG12015-RB 107..745 655..17 3195 100 Minus
RabX6-RA 1286 CG12015-RA 107..745 655..17 3195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 690947..691410 480..17 2320 100 Minus
3L 28110227 3L 690623..690799 655..479 885 100 Minus
Blast to na_te.dros performed on 2015-01-30 18:07:53 has no hits.

BS13079.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:00 Download gff for BS13079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12015-PA 4..642 17..655 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:23 Download gff for BS13079.3prime
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 107..750 11..655 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:38 Download gff for BS13079.3prime
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 107..750 11..655 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:38 Download gff for BS13079.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 690623..690799 479..655 100 -> Minus
3L 690949..691415 11..478 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:23 Download gff for BS13079.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 690623..690799 479..655 100 -> Minus
arm_3L 690949..691415 11..478 99   Minus

BS13079.5prime Sequence

672 bp (657 high quality bases) assembled on 2006-10-13

> BS13079.5prime
GAAGTTATCAGTCGACATGGCCACGATGCGCATACCCAAACAAAAGGTGA
TCCTGTGCGGCGACTACGGAGTGGGCAAGAGCTCCCTGTTCCGGCGCTTC
GCCACCAACACCTTCATCACGGATACGGACAGGAAATCCACGTTGGGACT
GGACCACATCGATAGGGAATACAGTGTGAATGAAAAGCAGATCAAGCTCC
AACTCTGGGACACCGGTGGCATGGAGCGTGTGGCCTCGGTCACATCCTCG
TACTACAAGTTCGCCGAGGGAGCCATCCTGGTCTTTGCTTTGGACAACGC
CGCTTCGTTCCACTCGCTGTCGCAGCACTTGCTGGACATTGTGACCTATG
CAGAGAATGCCAAGATCTTCATCTGTGGCAATAAGAGCGATCTGGATGGC
AGGGAGCCGGAGGTCAGCGATGAGGAAGTGGAGGCCTTCTGCGAGCAGTG
CCACTCACTGATCAGTGCCACGTACAAGACCTCCTGTCGCAGCGGCGCCG
GTGTGGAGGAGATGTTCCGTGACATCTCTAGGCAACTGGTCCACGCCAAT
CGCTCCAAAATGGAACTGCAGGCACTGGAGCACAAGAGCTTCCAGGTGGA
CACTGCGAGCAGCGGCGCGGCGACCAACGAGGAGGACGCCTCCTCCTGCG
GCTGCTAGAAGCTTTCTAGACC

BS13079.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12015-PA 642 RabX6-RA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
RabX6-RB 1286 CG12015-RB 103..745 16..658 3215 100 Plus
RabX6-RA 1286 CG12015-RA 103..745 16..658 3215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 690947..691410 195..658 2320 100 Plus
3L 28110227 3L 690619..690799 16..196 905 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:30:39 has no hits.

BS13079.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:00 Download gff for BS13079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12015-PA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:14 Download gff for BS13079.5prime
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 99..750 9..664 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:00 Download gff for BS13079.5prime
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 99..750 9..664 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:00 Download gff for BS13079.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 690615..690799 9..196 98 -> Plus
3L 690949..691415 197..664 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:14 Download gff for BS13079.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 690615..690799 9..196 98 -> Plus
arm_3L 690949..691415 197..664 99   Plus

BS13079.complete Sequence

674 bp assembled on 2006-11-01

GenBank Submission: FJ637379

> BS13079.complete
GAAGTTATCAGTCGACATGGCCACGATGCGCATACCCAAACAAAAGGTGA
TCCTGTGCGGCGACTACGGAGTGGGCAAGAGCTCCCTGTTCCGGCGCTTC
GCCACCAACACCTTCATCACGGATACGGACAGGAAATCCACGTTGGGACT
GGACCACATCGATAGGGAATACAGTGTGAATGAAAAGCAGATCAAGCTCC
AACTCTGGGACACCGGTGGCATGGAGCGTGTGGCCTCGGTCACATCCTCG
TACTACAAGTTCGCCGAGGGAGCCATCCTGGTCTTTGCTTTGGACAACGC
CGCTTCGTTCCACTCGCTGTCGCAGCACTTGCTGGACATTGTGACCTATG
CAGAGAATGCCAAGATCTTCATCTGTGGCAATAAGAGCGATCTGGATGGC
AGGGAGCCGGAGGTCAGCGATGAGGAAGTGGAGGCCTTCTGCGAGCAGTG
CCACTCACTGATCAGTGCCACGTACAAGACCTCCTGTCGCAGCGGCGCCG
GTGTGGAGGAGATGTTCCGTGACATCTCTAGGCAACTGGTCCACGCCAAT
CGCTCCAAAATGGAACTGCAGGCACTGGAGCACAAGAGCTTCCAGGTGGA
CACTGCGAGCAGCGGCGCGGCGACCAACGAGGAGGACGCCTCCTCCTGCG
GCTGCTAGAAGCTTTCTAGACCAT

BS13079.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
RabX6-RB 669 CG12015-PB 1..642 17..658 3210 100 Plus
RabX6-RA 642 CG12015-PA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
RabX6-RB 1286 CG12015-RB 103..745 16..658 3215 100 Plus
RabX6-RA 1286 CG12015-RA 103..745 16..658 3215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 690947..691410 195..658 2320 100 Plus
3L 28110227 3L 690619..690799 16..196 905 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:05:38 has no hits.

BS13079.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:10 Download gff for BS13079.complete
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:35 Download gff for BS13079.complete
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 97..748 9..664 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:17:15 Download gff for BS13079.complete
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 104..745 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:10 Download gff for BS13079.complete
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 97..748 9..664 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:39 Download gff for BS13079.complete
Subject Subject Range Query Range Percent Splice Strand
RabX6-RA 104..745 17..658 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:39 Download gff for BS13079.complete
Subject Subject Range Query Range Percent Splice Strand
3L 690620..690799 17..196 100 -> Plus
3L 690949..691410 197..658 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:17:15 Download gff for BS13079.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 690620..690799 17..196 100 -> Plus
arm_3L 690949..691410 197..658 100   Plus

BS13079.pep Sequence

Translation from 16 to 657

> BS13079.pep
MATMRIPKQKVILCGDYGVGKSSLFRRFATNTFITDTDRKSTLGLDHIDR
EYSVNEKQIKLQLWDTGGMERVASVTSSYYKFAEGAILVFALDNAASFHS
LSQHLLDIVTYAENAKIFICGNKSDLDGREPEVSDEEVEAFCEQCHSLIS
ATYKTSCRSGAGVEEMFRDISRQLVHANRSKMELQALEHKSFQVDTASSG
AATNEEDASSCGC*

BS13079.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
RabX6-PA 213 CG12015-PA 1..213 1..213 1096 100 Plus
RabX6-PB 222 CG12015-PB 1..213 1..213 1096 100 Plus
Rab14-PD 215 CG4212-PD 13..215 10..211 271 34 Plus
Rab14-PA 215 CG4212-PA 13..215 10..211 271 34 Plus
Rab14-PB 239 CG4212-PB 37..239 10..211 271 34 Plus