Clone Sequence Records
BS13079.3prime Sequence
655 bp (651 high quality bases) assembled on 2006-10-13
> BS13079.3prime
ATGGTCTAGAAAGCTTCTAGCAGCCGCAGGAGGAGGCGTCCTCCTCGTTG
GTCGCCGCGCCGCTGCTCGCAGTGTCCACCTGGAAGCTCTTGTGCTCCAG
TGCCTGCAGTTCCATTTTGGAGCGATTGGCGTGGACCAGTTGCCTAGAGA
TGTCACGGAACATCTCCTCCACACCGGCGCCGCTGCGACAGGAGGTCTTG
TACGTGGCACTGATCAGTGAGTGGCACTGCTCGCAGAAGGCCTCCACTTC
CTCATCGCTGACCTCCGGCTCCCTGCCATCCAGATCGCTCTTATTGCCAC
AGATGAAGATCTTGGCATTCTCTGCATAGGTCACAATGTCCAGCAAGTGC
TGCGACAGCGAGTGGAACGAAGCGGCGTTGTCCAAAGCAAAGACCAGGAT
GGCTCCCTCGGCGAACTTGTAGTACGAGGATGTGACCGAGGCCACACGCT
CCATGCCACCGGTGTCCCAGAGTTGGAGCTTGATCTGCTTTTCATTCACA
CTGTATTCCCTATCGATGTGGTCCAGTCCCAACGTGGATTTCCTGTCCGT
ATCCGTGATGAAGGTGTTGGTGGCGAAGCGCCGGAACAGGGAGCTCTTGC
CCACTCCGTAGTCGCCGCACAGGATCACCTTTTGTTTGGGTATGCGCATC
GTGGC
BS13079.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12015-PA | 642 | RabX6-RA | 4..642 | 655..17 | 3195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RabX6-RB | 1286 | CG12015-RB | 107..745 | 655..17 | 3195 | 100 | Minus |
RabX6-RA | 1286 | CG12015-RA | 107..745 | 655..17 | 3195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:07:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 690947..691410 | 480..17 | 2320 | 100 | Minus |
3L | 28110227 | 3L | 690623..690799 | 655..479 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:07:53 has no hits.
BS13079.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:00 Download gff for
BS13079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12015-PA | 4..642 | 17..655 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:23 Download gff for
BS13079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX6-RA | 107..750 | 11..655 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:38 Download gff for
BS13079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX6-RA | 107..750 | 11..655 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:38 Download gff for
BS13079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 690623..690799 | 479..655 | 100 | -> | Minus |
3L | 690949..691415 | 11..478 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:23 Download gff for
BS13079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 690623..690799 | 479..655 | 100 | -> | Minus |
arm_3L | 690949..691415 | 11..478 | 99 | | Minus |
BS13079.5prime Sequence
672 bp (657 high quality bases) assembled on 2006-10-13
> BS13079.5prime
GAAGTTATCAGTCGACATGGCCACGATGCGCATACCCAAACAAAAGGTGA
TCCTGTGCGGCGACTACGGAGTGGGCAAGAGCTCCCTGTTCCGGCGCTTC
GCCACCAACACCTTCATCACGGATACGGACAGGAAATCCACGTTGGGACT
GGACCACATCGATAGGGAATACAGTGTGAATGAAAAGCAGATCAAGCTCC
AACTCTGGGACACCGGTGGCATGGAGCGTGTGGCCTCGGTCACATCCTCG
TACTACAAGTTCGCCGAGGGAGCCATCCTGGTCTTTGCTTTGGACAACGC
CGCTTCGTTCCACTCGCTGTCGCAGCACTTGCTGGACATTGTGACCTATG
CAGAGAATGCCAAGATCTTCATCTGTGGCAATAAGAGCGATCTGGATGGC
AGGGAGCCGGAGGTCAGCGATGAGGAAGTGGAGGCCTTCTGCGAGCAGTG
CCACTCACTGATCAGTGCCACGTACAAGACCTCCTGTCGCAGCGGCGCCG
GTGTGGAGGAGATGTTCCGTGACATCTCTAGGCAACTGGTCCACGCCAAT
CGCTCCAAAATGGAACTGCAGGCACTGGAGCACAAGAGCTTCCAGGTGGA
CACTGCGAGCAGCGGCGCGGCGACCAACGAGGAGGACGCCTCCTCCTGCG
GCTGCTAGAAGCTTTCTAGACC
BS13079.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12015-PA | 642 | RabX6-RA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RabX6-RB | 1286 | CG12015-RB | 103..745 | 16..658 | 3215 | 100 | Plus |
RabX6-RA | 1286 | CG12015-RA | 103..745 | 16..658 | 3215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 690947..691410 | 195..658 | 2320 | 100 | Plus |
3L | 28110227 | 3L | 690619..690799 | 16..196 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:30:39 has no hits.
BS13079.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:00 Download gff for
BS13079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12015-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:14 Download gff for
BS13079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX6-RA | 99..750 | 9..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:00 Download gff for
BS13079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX6-RA | 99..750 | 9..664 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:00 Download gff for
BS13079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 690615..690799 | 9..196 | 98 | -> | Plus |
3L | 690949..691415 | 197..664 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:14 Download gff for
BS13079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 690615..690799 | 9..196 | 98 | -> | Plus |
arm_3L | 690949..691415 | 197..664 | 99 | | Plus |
BS13079.complete Sequence
674 bp assembled on 2006-11-01
GenBank Submission: FJ637379
> BS13079.complete
GAAGTTATCAGTCGACATGGCCACGATGCGCATACCCAAACAAAAGGTGA
TCCTGTGCGGCGACTACGGAGTGGGCAAGAGCTCCCTGTTCCGGCGCTTC
GCCACCAACACCTTCATCACGGATACGGACAGGAAATCCACGTTGGGACT
GGACCACATCGATAGGGAATACAGTGTGAATGAAAAGCAGATCAAGCTCC
AACTCTGGGACACCGGTGGCATGGAGCGTGTGGCCTCGGTCACATCCTCG
TACTACAAGTTCGCCGAGGGAGCCATCCTGGTCTTTGCTTTGGACAACGC
CGCTTCGTTCCACTCGCTGTCGCAGCACTTGCTGGACATTGTGACCTATG
CAGAGAATGCCAAGATCTTCATCTGTGGCAATAAGAGCGATCTGGATGGC
AGGGAGCCGGAGGTCAGCGATGAGGAAGTGGAGGCCTTCTGCGAGCAGTG
CCACTCACTGATCAGTGCCACGTACAAGACCTCCTGTCGCAGCGGCGCCG
GTGTGGAGGAGATGTTCCGTGACATCTCTAGGCAACTGGTCCACGCCAAT
CGCTCCAAAATGGAACTGCAGGCACTGGAGCACAAGAGCTTCCAGGTGGA
CACTGCGAGCAGCGGCGCGGCGACCAACGAGGAGGACGCCTCCTCCTGCG
GCTGCTAGAAGCTTTCTAGACCAT
BS13079.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:05:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RabX6-RB | 669 | CG12015-PB | 1..642 | 17..658 | 3210 | 100 | Plus |
RabX6-RA | 642 | CG12015-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RabX6-RB | 1286 | CG12015-RB | 103..745 | 16..658 | 3215 | 100 | Plus |
RabX6-RA | 1286 | CG12015-RA | 103..745 | 16..658 | 3215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:05:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 690947..691410 | 195..658 | 2320 | 100 | Plus |
3L | 28110227 | 3L | 690619..690799 | 16..196 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:05:38 has no hits.
BS13079.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:10 Download gff for
BS13079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX6-RA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:35 Download gff for
BS13079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX6-RA | 97..748 | 9..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:17:15 Download gff for
BS13079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX6-RA | 104..745 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:10 Download gff for
BS13079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX6-RA | 97..748 | 9..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:39 Download gff for
BS13079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RabX6-RA | 104..745 | 17..658 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:39 Download gff for
BS13079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 690620..690799 | 17..196 | 100 | -> | Plus |
3L | 690949..691410 | 197..658 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:17:15 Download gff for
BS13079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 690620..690799 | 17..196 | 100 | -> | Plus |
arm_3L | 690949..691410 | 197..658 | 100 | | Plus |
BS13079.pep Sequence
Translation from 16 to 657
> BS13079.pep
MATMRIPKQKVILCGDYGVGKSSLFRRFATNTFITDTDRKSTLGLDHIDR
EYSVNEKQIKLQLWDTGGMERVASVTSSYYKFAEGAILVFALDNAASFHS
LSQHLLDIVTYAENAKIFICGNKSDLDGREPEVSDEEVEAFCEQCHSLIS
ATYKTSCRSGAGVEEMFRDISRQLVHANRSKMELQALEHKSFQVDTASSG
AATNEEDASSCGC*
BS13079.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RabX6-PA | 213 | CG12015-PA | 1..213 | 1..213 | 1096 | 100 | Plus |
RabX6-PB | 222 | CG12015-PB | 1..213 | 1..213 | 1096 | 100 | Plus |
Rab14-PD | 215 | CG4212-PD | 13..215 | 10..211 | 271 | 34 | Plus |
Rab14-PA | 215 | CG4212-PA | 13..215 | 10..211 | 271 | 34 | Plus |
Rab14-PB | 239 | CG4212-PB | 37..239 | 10..211 | 271 | 34 | Plus |