Clone BS13081 Report

Search the DGRC for BS13081

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptBx-RB
Protein status:BS13081.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13081.3prime Sequence

680 bp (607 high quality bases) assembled on 2006-10-13

> BS13081.3prime
ATGGTCTAGAAAGCTTTTAGCTGGACGCGCCCAGTTGATTCTTCATATGG
GCAGCGGCGGCGGCGGCAGCAGCAGCAGCGGCAAACGGTGAGCCACCGCC
GGTCGGTGTCTGTGGGCCATTGTTGTTGTTATTGTGATCGCCAGGGGTGC
GCGGTCCGTTGACCATGCCCACGCCATTCACATTGCCGCCACCGGGTCCG
CCGCCCAGCAATCCACCAGCGGTATTCTGCGCCCCAGCCGCTCCCGTCGG
TGAGCCCTGGCCCAAGGAGGAGACGTGTCGCTTGAGCATCGGATGATTGG
CCATCGATGCGAAGACCAGGCGCTCCTCATAGTCGTACTCGCAGAGTATC
TTGTTCTCGCACAGGTAGAAACGGTCGCCCACACAGAATCTGTGGTTACA
CTGCTGACAAGCGAAGCACTCCAAGTGATAGACATTGGTCCTTGCACGCA
TCACCATCTCGAAGGCTGGGATCACCTTGCTGCAGGCGGCGCAGTAGCCC
GTGTTGCCAAACAATCTCAAGTAGTCCCGCTTGCAGAGCATCAGGTTGCC
CTTGGTGTAGAGCGTGGAGCCCACCTCGCCCAGGCGGCAGTCGCAGCAGC
CGCACTTGAGGCAGTCCTCGTGCCACAGCATGTCCAGGGCGCGGAGGAAA
TAGCGGTCCTGGATGTGCTTGCCGCAACCG

BS13081.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6500-PA 942 Bx-RA 283..942 676..17 3275 99.8 Minus
CG6500-PB 1155 Bx-RB 496..1155 676..17 3275 99.8 Minus
CG6500-PC 942 Bx-RC 283..942 676..17 3275 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
Bx-RD 2494 CG44425-RD 1041..1706 680..15 3300 99.7 Minus
Bx-RC 3413 CG44425-RC 877..1542 680..15 3300 99.7 Minus
Bx-RB 2051 CG44425-RB 598..1263 680..15 3300 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18570561..18570938 392..15 1890 100 Minus
X 23542271 X 18566974..18567138 680..516 795 98.8 Minus
X 23542271 X 18567509..18567636 517..390 640 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:22:10 has no hits.

BS13081.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:00 Download gff for BS13081.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6500-PC 279..942 17..680 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:32 Download gff for BS13081.3prime
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 598..1263 15..680 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:26 Download gff for BS13081.3prime
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 598..1263 15..680 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:26 Download gff for BS13081.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18566974..18567138 516..680 98 -> Minus
X 18567511..18567636 390..515 100 -> Minus
X 18570564..18570938 15..389 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:32 Download gff for BS13081.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18461007..18461171 516..680 98 -> Minus
arm_X 18461544..18461669 390..515 100 -> Minus
arm_X 18464597..18464971 15..389 100   Minus

BS13081.5prime Sequence

706 bp (605 high quality bases) assembled on 2006-10-13

> BS13081.5prime
GAAGTTATCAGTCGACATGGAGTACCTCTACAACGCTAGTATGCATTGCG
AAGATGAAGAACGCGTCAATTTCTACAACATGGACAAGTTCTTCGTGCCC
CACGTGCAGTCGATTGAGCTGGAGCAGCAGGCGATCCTGCGGCAATACGT
GCCCCAGTACGCTTATCAGTGGCCCTGGGGATTTGCCCCTTCCGCTTACA
GTTATTACCAGGGATTCGGTAGCCTTAATATGATGACTATGGACATTACC
AAAACCGAACCCGGTCTCGTCGGGCTTTCCTCCAACCAACAGCAGCAGCA
GCAGCAGCAGTCGCAGCAAAGCAACGCCGGCATGAACAGCGGTGGCCAGA
ACAACGGGCCCAATCCCAATGGCAATGGGAACGTGGTCAATGTGGTCAAC
TCCGGCGGTGCCGGTGGCGGCAACAATGGCAACGGGAATGTCCAGAGCAT
CGCCGCCGCTGCCAACAATAATAACAATAACAACAACAACGGCAGCCAAT
TGTGCGCCGGCTGCGGCAAGCACATCCAGGACCGCTATCTCCTCCGCGCC
CTGGACATGCTGTGGCACGAGGACTGCCTCAAGTGCGGCTGCTGCGACTG
CCGCCTGAGCGAGGTGGGCTCCACGCTCTACACCAAGGGCAACCTGATGC
TCTGCAAGCGGGACTACTTGAGATTGTTTGGCAACACGGGCTACTGCGCC
GCCTGC

BS13081.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6500-PB 1155 Bx-RB 1..690 17..706 3425 99.8 Plus
CG6500-PA 942 Bx-RA 1..477 230..706 2360 99.7 Plus
CG6500-PC 942 Bx-RC 1..477 230..706 2360 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
Bx-RB 2051 CG44425-RB 102..796 12..706 3445 99.7 Plus
Bx-RD 2494 CG44425-RD 761..1239 228..706 2380 99.8 Plus
Bx-RC 3413 CG44425-RC 597..1075 228..706 2380 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18566696..18567138 230..672 2200 99.8 Plus
X 23542271 X 18566407..18566624 12..229 1075 99.5 Plus
X 23542271 X 18567509..18567544 671..706 180 100 Plus
Blast to na_te.dros performed 2015-02-08 12:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 2731..2802 428..499 125 67.1 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 3132..3208 413..492 122 65 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2627..2663 459..495 122 81.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2430 397..490 112 59.6 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2649..2684 463..498 108 77.8 Plus

BS13081.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:01 Download gff for BS13081.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6500-PB 1..690 17..706 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:57 Download gff for BS13081.5prime
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 100..796 9..706 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:29 Download gff for BS13081.5prime
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 100..796 9..706 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:29 Download gff for BS13081.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18566405..18566624 9..229 99 -> Plus
X 18566696..18567138 230..672 99 -> Plus
X 18567511..18567544 673..706 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:57 Download gff for BS13081.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18460438..18460657 9..229 99 -> Plus
arm_X 18460729..18461171 230..672 99 -> Plus
arm_X 18461544..18461577 673..706 100   Plus

BS13081.complete Sequence

1187 bp assembled on 2006-11-01

GenBank Submission: FJ637380

> BS13081.complete
GAAGTTATCAGTCGACATGGAGTACCTCTACAACGCTAGTATGCATTGCG
AAGATGAAGAACGCGTCAATTTCTACAACATGGACAAGTTCTTCGTGCCC
CACGTGCAGTCGATTGAGCTGGAGCAGCAGGCGATCCTGCGGCAATACGT
GCCCCAGTACGCTTATCAGTGGCCCTGGGGATTTGCCCCTTCCGCTTACA
GTTATTACCAGGGATTCGGTAGCCTTAATATGATGACTATGGACATTACC
AAAACCGAACCCGGTCTCGTCGGGCTTTCCTCCAACCAACAGCAGCAGCA
GCAGCAGCAGTCGCAGCAAAGCAACGCCGGCATGAACAGCGGTGGCCAGA
ACAACGGGCCCAATCCCAATGGCAATGGGAACGTGGTCAATGTGGTCAAC
TCCGGCGGTGCCGGTGGCGGCAACAATGGCAACGGGAATGTCCAGAGCAT
CGCCGCCGCTGCCAACAATAATAACAATAACAACAACAACGGCAGCCAAT
TGTGCGCCGGCTGCGGCAAGCACATCCAGGACCGCTATCTCCTCCGCGCC
CTGGACATGCTGTGGCACGAGGACTGCCTCAAGTGCGGCTGCTGCGACTG
CCGCCTGGGCGAGGTGGGCTCCACGCTCTACACCAAGGGCAACCTGATGC
TCTGCAAGCGGGACTACTTGAGATTGTTTGGCAACACGGGCTACTGCGCC
GCCTGCAGCAAGGTGATCCCAGCCTTCGAGATGGTGATGCGTGCAAGGAC
CAATGTCTATCACTTGGAGTGCTTCGCTTGTCAGCAGTGTAACCACAGAT
TCTGTGTGGGCGACCGTTTCTACCTGTGCGAGAACAAGATACTCTGCGAG
TACGACTATGAGGAGCGCCTGGTCTTCGCATCGATGGCCAATCATCCGAT
GCTCAAGCGACACGTCTCCTCCTTGGGCCAGGGCTCACCGACGGGAGCGG
CTGGGGCGCAGAATACCGCTGGTGGATTGCTGGGCGGCGGACCCGGTGGC
GGCAATGTGAATGGCGTGGGCATGGTCAACGGACCGCGCACCCCTGGCGA
TCACAATAACAACAACAATGGCCCACAGACACCGACCGGCGGTGGCTCAC
CGTTTGCCGCTGCTGCTGCTGCCGCCGCCGCCGCTGCCCATATGAAGAAT
CAACTGGGCGCGTCCAGCTAAAAGCTTTCTAGACCAT

BS13081.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
Bx-RB 1155 CG44425-PB 1..1155 17..1171 5775 100 Plus
Bx-RD 1275 CG44425-PD 1..944 230..1173 4720 100 Plus
Bx-RC 942 CG44425-PC 1..942 230..1171 4710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
Bx-RB 2051 CG44425-RB 102..1263 12..1173 5795 99.9 Plus
Bx-RD 2494 CG44425-RD 761..1706 228..1173 4730 100 Plus
Bx-RC 3413 CG44425-RC 597..1542 228..1173 4730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18566696..18567138 230..672 2215 100 Plus
X 23542271 X 18570561..18570938 796..1173 1890 100 Plus
X 23542271 X 18566407..18566624 12..229 1075 99.5 Plus
X 23542271 X 18567509..18567636 671..798 640 100 Plus
Blast to na_te.dros performed 2014-11-27 14:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 2731..2802 428..499 125 67.1 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 3132..3208 413..492 122 65 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2627..2663 459..495 122 81.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2430 397..490 112 59.6 Plus

BS13081.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:19 Download gff for BS13081.complete
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 1..1155 17..1171 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:14 Download gff for BS13081.complete
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 69..1232 9..1173 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:08 Download gff for BS13081.complete
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 107..1259 17..1169 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:19 Download gff for BS13081.complete
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 69..1232 9..1173 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:50 Download gff for BS13081.complete
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 107..1259 17..1169 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:50 Download gff for BS13081.complete
Subject Subject Range Query Range Percent Splice Strand
X 18566412..18566624 17..229 100 -> Plus
X 18566696..18567138 230..672 100 -> Plus
X 18567511..18567636 673..798 100 -> Plus
X 18570564..18570934 799..1169 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:08 Download gff for BS13081.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18460445..18460657 17..229 100 -> Plus
arm_X 18464597..18464967 799..1169 100   Plus
arm_X 18460729..18461171 230..672 100 -> Plus
arm_X 18461544..18461669 673..798 100 -> Plus

BS13081.pep Sequence

Translation from 16 to 1170

> BS13081.pep
MEYLYNASMHCEDEERVNFYNMDKFFVPHVQSIELEQQAILRQYVPQYAY
QWPWGFAPSAYSYYQGFGSLNMMTMDITKTEPGLVGLSSNQQQQQQQQSQ
QSNAGMNSGGQNNGPNPNGNGNVVNVVNSGGAGGGNNGNGNVQSIAAAAN
NNNNNNNNGSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEV
GSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHL
ECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFASMANHPMLKRHV
SSLGQGSPTGAAGAQNTAGGLLGGGPGGGNVNGVGMVNGPRTPGDHNNNN
NGPQTPTGGGSPFAAAAAAAAAAAHMKNQLGASS*

BS13081.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
Bx-PB 384 CG44425-PB 1..384 1..384 2106 100 Plus
Bx-PC 313 CG44425-PC 1..313 72..384 1709 100 Plus
Bx-PA 313 CG44425-PA 1..313 72..384 1709 100 Plus
Bx-PF 383 CG44425-PF 71..383 72..384 1709 100 Plus
Bx-PD 424 CG44425-PD 1..313 72..384 1709 100 Plus