Clone Sequence Records
BS13081.3prime Sequence
680 bp (607 high quality bases) assembled on 2006-10-13
> BS13081.3prime
ATGGTCTAGAAAGCTTTTAGCTGGACGCGCCCAGTTGATTCTTCATATGG
GCAGCGGCGGCGGCGGCAGCAGCAGCAGCGGCAAACGGTGAGCCACCGCC
GGTCGGTGTCTGTGGGCCATTGTTGTTGTTATTGTGATCGCCAGGGGTGC
GCGGTCCGTTGACCATGCCCACGCCATTCACATTGCCGCCACCGGGTCCG
CCGCCCAGCAATCCACCAGCGGTATTCTGCGCCCCAGCCGCTCCCGTCGG
TGAGCCCTGGCCCAAGGAGGAGACGTGTCGCTTGAGCATCGGATGATTGG
CCATCGATGCGAAGACCAGGCGCTCCTCATAGTCGTACTCGCAGAGTATC
TTGTTCTCGCACAGGTAGAAACGGTCGCCCACACAGAATCTGTGGTTACA
CTGCTGACAAGCGAAGCACTCCAAGTGATAGACATTGGTCCTTGCACGCA
TCACCATCTCGAAGGCTGGGATCACCTTGCTGCAGGCGGCGCAGTAGCCC
GTGTTGCCAAACAATCTCAAGTAGTCCCGCTTGCAGAGCATCAGGTTGCC
CTTGGTGTAGAGCGTGGAGCCCACCTCGCCCAGGCGGCAGTCGCAGCAGC
CGCACTTGAGGCAGTCCTCGTGCCACAGCATGTCCAGGGCGCGGAGGAAA
TAGCGGTCCTGGATGTGCTTGCCGCAACCG
BS13081.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6500-PA | 942 | Bx-RA | 283..942 | 676..17 | 3275 | 99.8 | Minus |
CG6500-PB | 1155 | Bx-RB | 496..1155 | 676..17 | 3275 | 99.8 | Minus |
CG6500-PC | 942 | Bx-RC | 283..942 | 676..17 | 3275 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:22:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-RD | 2494 | CG44425-RD | 1041..1706 | 680..15 | 3300 | 99.7 | Minus |
Bx-RC | 3413 | CG44425-RC | 877..1542 | 680..15 | 3300 | 99.7 | Minus |
Bx-RB | 2051 | CG44425-RB | 598..1263 | 680..15 | 3300 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:22:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18570561..18570938 | 392..15 | 1890 | 100 | Minus |
X | 23542271 | X | 18566974..18567138 | 680..516 | 795 | 98.8 | Minus |
X | 23542271 | X | 18567509..18567636 | 517..390 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:22:10 has no hits.
BS13081.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:00 Download gff for
BS13081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6500-PC | 279..942 | 17..680 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:32 Download gff for
BS13081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 598..1263 | 15..680 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:26 Download gff for
BS13081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 598..1263 | 15..680 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:26 Download gff for
BS13081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18566974..18567138 | 516..680 | 98 | -> | Minus |
X | 18567511..18567636 | 390..515 | 100 | -> | Minus |
X | 18570564..18570938 | 15..389 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:32 Download gff for
BS13081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18461007..18461171 | 516..680 | 98 | -> | Minus |
arm_X | 18461544..18461669 | 390..515 | 100 | -> | Minus |
arm_X | 18464597..18464971 | 15..389 | 100 | | Minus |
BS13081.5prime Sequence
706 bp (605 high quality bases) assembled on 2006-10-13
> BS13081.5prime
GAAGTTATCAGTCGACATGGAGTACCTCTACAACGCTAGTATGCATTGCG
AAGATGAAGAACGCGTCAATTTCTACAACATGGACAAGTTCTTCGTGCCC
CACGTGCAGTCGATTGAGCTGGAGCAGCAGGCGATCCTGCGGCAATACGT
GCCCCAGTACGCTTATCAGTGGCCCTGGGGATTTGCCCCTTCCGCTTACA
GTTATTACCAGGGATTCGGTAGCCTTAATATGATGACTATGGACATTACC
AAAACCGAACCCGGTCTCGTCGGGCTTTCCTCCAACCAACAGCAGCAGCA
GCAGCAGCAGTCGCAGCAAAGCAACGCCGGCATGAACAGCGGTGGCCAGA
ACAACGGGCCCAATCCCAATGGCAATGGGAACGTGGTCAATGTGGTCAAC
TCCGGCGGTGCCGGTGGCGGCAACAATGGCAACGGGAATGTCCAGAGCAT
CGCCGCCGCTGCCAACAATAATAACAATAACAACAACAACGGCAGCCAAT
TGTGCGCCGGCTGCGGCAAGCACATCCAGGACCGCTATCTCCTCCGCGCC
CTGGACATGCTGTGGCACGAGGACTGCCTCAAGTGCGGCTGCTGCGACTG
CCGCCTGAGCGAGGTGGGCTCCACGCTCTACACCAAGGGCAACCTGATGC
TCTGCAAGCGGGACTACTTGAGATTGTTTGGCAACACGGGCTACTGCGCC
GCCTGC
BS13081.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6500-PB | 1155 | Bx-RB | 1..690 | 17..706 | 3425 | 99.8 | Plus |
CG6500-PA | 942 | Bx-RA | 1..477 | 230..706 | 2360 | 99.7 | Plus |
CG6500-PC | 942 | Bx-RC | 1..477 | 230..706 | 2360 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:20:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-RB | 2051 | CG44425-RB | 102..796 | 12..706 | 3445 | 99.7 | Plus |
Bx-RD | 2494 | CG44425-RD | 761..1239 | 228..706 | 2380 | 99.8 | Plus |
Bx-RC | 3413 | CG44425-RC | 597..1075 | 228..706 | 2380 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:19:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18566696..18567138 | 230..672 | 2200 | 99.8 | Plus |
X | 23542271 | X | 18566407..18566624 | 12..229 | 1075 | 99.5 | Plus |
X | 23542271 | X | 18567509..18567544 | 671..706 | 180 | 100 | Plus |
Blast to na_te.dros performed 2015-02-08 12:19:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 2731..2802 | 428..499 | 125 | 67.1 | Plus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 3132..3208 | 413..492 | 122 | 65 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2627..2663 | 459..495 | 122 | 81.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2430 | 397..490 | 112 | 59.6 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2649..2684 | 463..498 | 108 | 77.8 | Plus |
BS13081.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:01 Download gff for
BS13081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6500-PB | 1..690 | 17..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:57 Download gff for
BS13081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 100..796 | 9..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:29 Download gff for
BS13081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 100..796 | 9..706 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:29 Download gff for
BS13081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18566405..18566624 | 9..229 | 99 | -> | Plus |
X | 18566696..18567138 | 230..672 | 99 | -> | Plus |
X | 18567511..18567544 | 673..706 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:57 Download gff for
BS13081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18460438..18460657 | 9..229 | 99 | -> | Plus |
arm_X | 18460729..18461171 | 230..672 | 99 | -> | Plus |
arm_X | 18461544..18461577 | 673..706 | 100 | | Plus |
BS13081.complete Sequence
1187 bp assembled on 2006-11-01
GenBank Submission: FJ637380
> BS13081.complete
GAAGTTATCAGTCGACATGGAGTACCTCTACAACGCTAGTATGCATTGCG
AAGATGAAGAACGCGTCAATTTCTACAACATGGACAAGTTCTTCGTGCCC
CACGTGCAGTCGATTGAGCTGGAGCAGCAGGCGATCCTGCGGCAATACGT
GCCCCAGTACGCTTATCAGTGGCCCTGGGGATTTGCCCCTTCCGCTTACA
GTTATTACCAGGGATTCGGTAGCCTTAATATGATGACTATGGACATTACC
AAAACCGAACCCGGTCTCGTCGGGCTTTCCTCCAACCAACAGCAGCAGCA
GCAGCAGCAGTCGCAGCAAAGCAACGCCGGCATGAACAGCGGTGGCCAGA
ACAACGGGCCCAATCCCAATGGCAATGGGAACGTGGTCAATGTGGTCAAC
TCCGGCGGTGCCGGTGGCGGCAACAATGGCAACGGGAATGTCCAGAGCAT
CGCCGCCGCTGCCAACAATAATAACAATAACAACAACAACGGCAGCCAAT
TGTGCGCCGGCTGCGGCAAGCACATCCAGGACCGCTATCTCCTCCGCGCC
CTGGACATGCTGTGGCACGAGGACTGCCTCAAGTGCGGCTGCTGCGACTG
CCGCCTGGGCGAGGTGGGCTCCACGCTCTACACCAAGGGCAACCTGATGC
TCTGCAAGCGGGACTACTTGAGATTGTTTGGCAACACGGGCTACTGCGCC
GCCTGCAGCAAGGTGATCCCAGCCTTCGAGATGGTGATGCGTGCAAGGAC
CAATGTCTATCACTTGGAGTGCTTCGCTTGTCAGCAGTGTAACCACAGAT
TCTGTGTGGGCGACCGTTTCTACCTGTGCGAGAACAAGATACTCTGCGAG
TACGACTATGAGGAGCGCCTGGTCTTCGCATCGATGGCCAATCATCCGAT
GCTCAAGCGACACGTCTCCTCCTTGGGCCAGGGCTCACCGACGGGAGCGG
CTGGGGCGCAGAATACCGCTGGTGGATTGCTGGGCGGCGGACCCGGTGGC
GGCAATGTGAATGGCGTGGGCATGGTCAACGGACCGCGCACCCCTGGCGA
TCACAATAACAACAACAATGGCCCACAGACACCGACCGGCGGTGGCTCAC
CGTTTGCCGCTGCTGCTGCTGCCGCCGCCGCCGCTGCCCATATGAAGAAT
CAACTGGGCGCGTCCAGCTAAAAGCTTTCTAGACCAT
BS13081.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-RB | 1155 | CG44425-PB | 1..1155 | 17..1171 | 5775 | 100 | Plus |
Bx-RD | 1275 | CG44425-PD | 1..944 | 230..1173 | 4720 | 100 | Plus |
Bx-RC | 942 | CG44425-PC | 1..942 | 230..1171 | 4710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-RB | 2051 | CG44425-RB | 102..1263 | 12..1173 | 5795 | 99.9 | Plus |
Bx-RD | 2494 | CG44425-RD | 761..1706 | 228..1173 | 4730 | 100 | Plus |
Bx-RC | 3413 | CG44425-RC | 597..1542 | 228..1173 | 4730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18566696..18567138 | 230..672 | 2215 | 100 | Plus |
X | 23542271 | X | 18570561..18570938 | 796..1173 | 1890 | 100 | Plus |
X | 23542271 | X | 18566407..18566624 | 12..229 | 1075 | 99.5 | Plus |
X | 23542271 | X | 18567509..18567636 | 671..798 | 640 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:50:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 2731..2802 | 428..499 | 125 | 67.1 | Plus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 3132..3208 | 413..492 | 122 | 65 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2627..2663 | 459..495 | 122 | 81.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2430 | 397..490 | 112 | 59.6 | Plus |
BS13081.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:19 Download gff for
BS13081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 1..1155 | 17..1171 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:14 Download gff for
BS13081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 69..1232 | 9..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:08 Download gff for
BS13081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 107..1259 | 17..1169 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:19 Download gff for
BS13081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 69..1232 | 9..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:50 Download gff for
BS13081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 107..1259 | 17..1169 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:50 Download gff for
BS13081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18566412..18566624 | 17..229 | 100 | -> | Plus |
X | 18566696..18567138 | 230..672 | 100 | -> | Plus |
X | 18567511..18567636 | 673..798 | 100 | -> | Plus |
X | 18570564..18570934 | 799..1169 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:08 Download gff for
BS13081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18460445..18460657 | 17..229 | 100 | -> | Plus |
arm_X | 18464597..18464967 | 799..1169 | 100 | | Plus |
arm_X | 18460729..18461171 | 230..672 | 100 | -> | Plus |
arm_X | 18461544..18461669 | 673..798 | 100 | -> | Plus |
BS13081.pep Sequence
Translation from 16 to 1170
> BS13081.pep
MEYLYNASMHCEDEERVNFYNMDKFFVPHVQSIELEQQAILRQYVPQYAY
QWPWGFAPSAYSYYQGFGSLNMMTMDITKTEPGLVGLSSNQQQQQQQQSQ
QSNAGMNSGGQNNGPNPNGNGNVVNVVNSGGAGGGNNGNGNVQSIAAAAN
NNNNNNNNGSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEV
GSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHL
ECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFASMANHPMLKRHV
SSLGQGSPTGAAGAQNTAGGLLGGGPGGGNVNGVGMVNGPRTPGDHNNNN
NGPQTPTGGGSPFAAAAAAAAAAAHMKNQLGASS*
BS13081.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-PB | 384 | CG44425-PB | 1..384 | 1..384 | 2106 | 100 | Plus |
Bx-PC | 313 | CG44425-PC | 1..313 | 72..384 | 1709 | 100 | Plus |
Bx-PA | 313 | CG44425-PA | 1..313 | 72..384 | 1709 | 100 | Plus |
Bx-PF | 383 | CG44425-PF | 71..383 | 72..384 | 1709 | 100 | Plus |
Bx-PD | 424 | CG44425-PD | 1..313 | 72..384 | 1709 | 100 | Plus |