Clone Sequence Records
BS13084.3prime Sequence
658 bp (658 high quality bases) assembled on 2006-10-13
> BS13084.3prime
ATGGTCTAGAAAGCTTTCACCTCACCACATCCCGGCAAACGATCTTCGTT
TTGAAGGATGCCCTCTGACCGCCGTACAAGTCCGAGGAGGCAGACGACGA
ATAGTCGACGTGACTGCCCGCCTGTGACTGTTCTTGCCTGGCCAAAAAGC
TATCAGCTATGGCTCGATCTAGACCCGTATACTGGAAATTGGGAGCACCG
TCCAGGACATCCGCTTCCGATTTTCGGCGCTGCCGGCGATTGGCATCAGA
CTTTCCCGCCCGCCGCCGTCTTCGCTGCCCATTGATCTCCGCTGACTTTG
TGCTCTTGTGAGTCCGGTATGTCCCGCTTAGGCTAGCCGGGTGGGCGTAG
GTCACGGATCCGGGCCCAGGTCGCATGTAGGGAAGGGTCATTCCACGGTA
CTGCGCCGGCAGCGGGGGCACGGGAAGCAGAAGTCCAGCTCTGGCGCCCG
GAGGCGGAGGTGGCAAGCGTGTGGGCGGTGGTGGTGCCATCCCATTGCCA
GCGGTGGAGGGAATGAGCATGATCTGCCGCGATGGAGGCGTCAGTTTGCG
GACTGTTGGCGGCAGGCTTCCCATCTGGGTGGCATACATCCACATAGCCG
CTAGCTTCTCGGTGTTCACCTTTTCACTGCCATTCAGAGACATGTCGACT
GATAACTT
BS13084.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-PA | 1803 | CG17600-RA | 1177..1798 | 643..22 | 3110 | 100 | Minus |
CG17600-PB | 627 | CG17600-RB | 1..622 | 643..22 | 3110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-RC | 973 | CG17600-RC | 141..767 | 643..17 | 3120 | 99.8 | Minus |
CG17600-RB | 1069 | CG17600-RB | 237..863 | 643..17 | 3120 | 99.8 | Minus |
CG17600-RA | 2470 | CG17600-RA | 1638..2264 | 643..17 | 3120 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22541344..22541818 | 491..17 | 2360 | 99.8 | Minus |
X | 23542271 | X | 22540938..22541068 | 621..491 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:24:09 has no hits.
BS13084.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:03 Download gff for
BS13084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-PB | 1..627 | 17..643 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:33 Download gff for
BS13084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RA | 1629..2264 | 17..653 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:41 Download gff for
BS13084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RA | 1629..2264 | 17..653 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:41 Download gff for
BS13084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22540940..22541068 | 491..619 | 100 | -> | Minus |
X | 22541345..22541818 | 17..490 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:33 Download gff for
BS13084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21942776..21942904 | 491..619 | 100 | -> | Minus |
arm_X | 21943181..21943654 | 17..490 | 99 | | Minus |
BS13084.5prime Sequence
657 bp (604 high quality bases) assembled on 2006-10-13
> BS13084.5prime
GAAGTTATCAGTCGACATGTCTCTGAATGGCAGTGAAAAGGTGAACACCG
AGAAGCTAGCGGCTATGTGGATGTATGCCACCCAGATGGGAAGCCTGCCG
CCAACAGTCCGCAAACTGACGCCTCCATCGCGGCAGATCATGCTCATTCC
CTCCACCGCTGGCAATGGGATGGCACCACCACCGCCCACACGCTTGCCAC
CTCCGCCTCCGGGCGCCAGAGCTGGACTTCTGCTTCCCGTGCCCCCGCTG
CCGGCGCAGTACCGTGGAATGACCCTTCCCTACATGCGACCTGGGCCCGG
ATCCGTGACCTACGCCCACCCGGCTAGCCTAAGCGGGACATACCGGACTC
ACAAGAGCACAAAGTCAGCGGAGATCAATGGGCAGCGAAGACGGCGGCGG
GCGGGAAAGTCTGATGCCAATCGCCGGCAGCGCCGAAAATCGGAAGCGGA
TGTCCTGGACGGTGCTCCCAATTTCCAGTATACGGGTCTAGATCGAGCCA
TAGCTGATAGCTTTTTGGCCAGGCAAGAACAGTCACAGGCGGGCAGTCAC
GTCGACTATTCGTCGTCTGCCTCCTCGGACTTGTACGGCGGTCAGAGGGC
ATCCTTCAAAACGAAGATCGTTTGCCGGGATGTGGTGATGTGAAAGCTTT
CTAGACC
BS13084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-PA | 1803 | CG17600-RA | 1177..1803 | 17..643 | 3135 | 100 | Plus |
CG17600-PB | 627 | CG17600-RB | 1..627 | 17..643 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-RC | 973 | CG17600-RC | 141..767 | 17..643 | 3135 | 100 | Plus |
CG17600-RB | 1069 | CG17600-RB | 237..863 | 17..643 | 3135 | 100 | Plus |
CG17600-RA | 2470 | CG17600-RA | 1638..2264 | 17..643 | 3135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22541344..22541818 | 169..643 | 2375 | 100 | Plus |
X | 23542271 | X | 22540938..22541068 | 39..169 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:15:27 has no hits.
BS13084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:03 Download gff for
BS13084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-PB | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:50 Download gff for
BS13084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RA | 1629..2264 | 7..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:32:39 Download gff for
BS13084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RA | 1629..2264 | 7..643 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:32:39 Download gff for
BS13084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22540940..22541068 | 41..169 | 100 | -> | Plus |
X | 22541345..22541818 | 170..643 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:50 Download gff for
BS13084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21942776..21942904 | 41..169 | 100 | -> | Plus |
arm_X | 21943181..21943654 | 170..643 | 100 | | Plus |
BS13084.complete Sequence
659 bp assembled on 2006-11-01
> BS13084.complete
GAAGTTATCAGTCGACATGTCTCTGAATGGCAGTGAAAAGGTGAACACCG
AGAAGCTAGCGGCTATGTGGATGTATGCCACCCAGATGGGAAGCCTGCCG
CCAACAGTCCGCAAACTGACGCCTCCATCGCGGCAGATCATGCTCATTCC
CTCCACCGCTGGCAATGGGATGGCACCACCACCGCCCACACGCTTGCCAC
CTCCGCCTCCGGGCGCCAGAGCTGGACTTCTGCTTCCCGTGCCCCCGCTG
CCGGCGCAGTACCGTGGAATGACCCTTCCCTACATGCGACCTGGGCCCGG
ATCCGTGACCTACGCCCACCCGGCTAGCCTAAGCGGGACATACCGGACTC
ACAAGAGCACAAAGTCAGCGGAGATCAATGGGCAGCGAAGACGGCGGCGG
GCGGGAAAGTCTGATGCCAATCGCCGGCAGCGCCGAAAATCGGAAGCGGA
TGTCCTGGACGGTGCTCCCAATTTCCAGTATACGGGTCTAGATCGAGCCA
TAGCTGATAGCTTTTTGGCCAGGCAAGAACAGTCACAGGCGGGCAGTCAC
GTCGACTATTCGTCGTCTGCCTCCTCGGACTTGTACGGCGGTCAGAGGGC
ATCCTTCAAAACGAAGATCGTTTGCCGGGATGTGGTGATGTGAAAGCTTT
CTAGACCAT
BS13084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:51:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-RC | 627 | CG17600-PC | 1..627 | 17..643 | 3135 | 100 | Plus |
CG17600-RB | 627 | CG17600-PB | 1..627 | 17..643 | 3135 | 100 | Plus |
CG17600-RA | 1803 | CG17600-PA | 1177..1803 | 17..643 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-RC | 973 | CG17600-RC | 141..767 | 17..643 | 3135 | 100 | Plus |
CG17600-RB | 1069 | CG17600-RB | 237..863 | 17..643 | 3135 | 100 | Plus |
CG17600-RA | 2470 | CG17600-RA | 1638..2264 | 17..643 | 3135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22541344..22541818 | 169..643 | 2375 | 100 | Plus |
X | 23542271 | X | 22540938..22541068 | 39..169 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:51:02 has no hits.
BS13084.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:20 Download gff for
BS13084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RB | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:16 Download gff for
BS13084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RB | 173..808 | 7..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:08 Download gff for
BS13084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RA | 1638..2263 | 17..642 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:20 Download gff for
BS13084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RB | 173..808 | 7..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:02 Download gff for
BS13084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RA | 1638..2263 | 17..642 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:02 Download gff for
BS13084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22540854..22540877 | 17..40 | 100 | -> | Plus |
X | 22540940..22541068 | 41..169 | 100 | -> | Plus |
X | 22541345..22541817 | 170..642 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:08 Download gff for
BS13084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21942690..21942713 | 17..40 | 100 | -> | Plus |
arm_X | 21942776..21942904 | 41..169 | 100 | -> | Plus |
arm_X | 21943181..21943653 | 170..642 | 100 | | Plus |
BS13084.pep Sequence
Translation from 16 to 642
> BS13084.pep
MSLNGSEKVNTEKLAAMWMYATQMGSLPPTVRKLTPPSRQIMLIPSTAGN
GMAPPPPTRLPPPPPGARAGLLLPVPPLPAQYRGMTLPYMRPGPGSVTYA
HPASLSGTYRTHKSTKSAEINGQRRRRRAGKSDANRRQRRKSEADVLDGA
PNFQYTGLDRAIADSFLARQEQSQAGSHVDYSSSASSDLYGGQRASFKTK
IVCRDVVM*
BS13084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-PC | 208 | CG17600-PC | 1..208 | 1..208 | 1083 | 100 | Plus |
CG17600-PB | 208 | CG17600-PB | 1..208 | 1..208 | 1083 | 100 | Plus |
CG17600-PA | 600 | CG17600-PA | 393..600 | 1..208 | 1083 | 100 | Plus |
CG17600-PD | 603 | CG17600-PD | 393..603 | 1..208 | 1069 | 98.6 | Plus |