Clone BS13084 Report

Search the DGRC for BS13084

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG17600-RB
Protein status:BS13084.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13084.3prime Sequence

658 bp (658 high quality bases) assembled on 2006-10-13

> BS13084.3prime
ATGGTCTAGAAAGCTTTCACCTCACCACATCCCGGCAAACGATCTTCGTT
TTGAAGGATGCCCTCTGACCGCCGTACAAGTCCGAGGAGGCAGACGACGA
ATAGTCGACGTGACTGCCCGCCTGTGACTGTTCTTGCCTGGCCAAAAAGC
TATCAGCTATGGCTCGATCTAGACCCGTATACTGGAAATTGGGAGCACCG
TCCAGGACATCCGCTTCCGATTTTCGGCGCTGCCGGCGATTGGCATCAGA
CTTTCCCGCCCGCCGCCGTCTTCGCTGCCCATTGATCTCCGCTGACTTTG
TGCTCTTGTGAGTCCGGTATGTCCCGCTTAGGCTAGCCGGGTGGGCGTAG
GTCACGGATCCGGGCCCAGGTCGCATGTAGGGAAGGGTCATTCCACGGTA
CTGCGCCGGCAGCGGGGGCACGGGAAGCAGAAGTCCAGCTCTGGCGCCCG
GAGGCGGAGGTGGCAAGCGTGTGGGCGGTGGTGGTGCCATCCCATTGCCA
GCGGTGGAGGGAATGAGCATGATCTGCCGCGATGGAGGCGTCAGTTTGCG
GACTGTTGGCGGCAGGCTTCCCATCTGGGTGGCATACATCCACATAGCCG
CTAGCTTCTCGGTGTTCACCTTTTCACTGCCATTCAGAGACATGTCGACT
GATAACTT

BS13084.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-PA 1803 CG17600-RA 1177..1798 643..22 3110 100 Minus
CG17600-PB 627 CG17600-RB 1..622 643..22 3110 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-RC 973 CG17600-RC 141..767 643..17 3120 99.8 Minus
CG17600-RB 1069 CG17600-RB 237..863 643..17 3120 99.8 Minus
CG17600-RA 2470 CG17600-RA 1638..2264 643..17 3120 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22541344..22541818 491..17 2360 99.8 Minus
X 23542271 X 22540938..22541068 621..491 655 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:24:09 has no hits.

BS13084.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:03 Download gff for BS13084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-PB 1..627 17..643 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:33 Download gff for BS13084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 1629..2264 17..653 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:41 Download gff for BS13084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 1629..2264 17..653 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:41 Download gff for BS13084.3prime
Subject Subject Range Query Range Percent Splice Strand
X 22540940..22541068 491..619 100 -> Minus
X 22541345..22541818 17..490 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:33 Download gff for BS13084.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21942776..21942904 491..619 100 -> Minus
arm_X 21943181..21943654 17..490 99   Minus

BS13084.5prime Sequence

657 bp (604 high quality bases) assembled on 2006-10-13

> BS13084.5prime
GAAGTTATCAGTCGACATGTCTCTGAATGGCAGTGAAAAGGTGAACACCG
AGAAGCTAGCGGCTATGTGGATGTATGCCACCCAGATGGGAAGCCTGCCG
CCAACAGTCCGCAAACTGACGCCTCCATCGCGGCAGATCATGCTCATTCC
CTCCACCGCTGGCAATGGGATGGCACCACCACCGCCCACACGCTTGCCAC
CTCCGCCTCCGGGCGCCAGAGCTGGACTTCTGCTTCCCGTGCCCCCGCTG
CCGGCGCAGTACCGTGGAATGACCCTTCCCTACATGCGACCTGGGCCCGG
ATCCGTGACCTACGCCCACCCGGCTAGCCTAAGCGGGACATACCGGACTC
ACAAGAGCACAAAGTCAGCGGAGATCAATGGGCAGCGAAGACGGCGGCGG
GCGGGAAAGTCTGATGCCAATCGCCGGCAGCGCCGAAAATCGGAAGCGGA
TGTCCTGGACGGTGCTCCCAATTTCCAGTATACGGGTCTAGATCGAGCCA
TAGCTGATAGCTTTTTGGCCAGGCAAGAACAGTCACAGGCGGGCAGTCAC
GTCGACTATTCGTCGTCTGCCTCCTCGGACTTGTACGGCGGTCAGAGGGC
ATCCTTCAAAACGAAGATCGTTTGCCGGGATGTGGTGATGTGAAAGCTTT
CTAGACC

BS13084.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-PA 1803 CG17600-RA 1177..1803 17..643 3135 100 Plus
CG17600-PB 627 CG17600-RB 1..627 17..643 3135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-RC 973 CG17600-RC 141..767 17..643 3135 100 Plus
CG17600-RB 1069 CG17600-RB 237..863 17..643 3135 100 Plus
CG17600-RA 2470 CG17600-RA 1638..2264 17..643 3135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22541344..22541818 169..643 2375 100 Plus
X 23542271 X 22540938..22541068 39..169 655 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:15:27 has no hits.

BS13084.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:03 Download gff for BS13084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-PB 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:50 Download gff for BS13084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 1629..2264 7..643 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:32:39 Download gff for BS13084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 1629..2264 7..643 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:32:39 Download gff for BS13084.5prime
Subject Subject Range Query Range Percent Splice Strand
X 22540940..22541068 41..169 100 -> Plus
X 22541345..22541818 170..643 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:50 Download gff for BS13084.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21942776..21942904 41..169 100 -> Plus
arm_X 21943181..21943654 170..643 100   Plus

BS13084.complete Sequence

659 bp assembled on 2006-11-01

> BS13084.complete
GAAGTTATCAGTCGACATGTCTCTGAATGGCAGTGAAAAGGTGAACACCG
AGAAGCTAGCGGCTATGTGGATGTATGCCACCCAGATGGGAAGCCTGCCG
CCAACAGTCCGCAAACTGACGCCTCCATCGCGGCAGATCATGCTCATTCC
CTCCACCGCTGGCAATGGGATGGCACCACCACCGCCCACACGCTTGCCAC
CTCCGCCTCCGGGCGCCAGAGCTGGACTTCTGCTTCCCGTGCCCCCGCTG
CCGGCGCAGTACCGTGGAATGACCCTTCCCTACATGCGACCTGGGCCCGG
ATCCGTGACCTACGCCCACCCGGCTAGCCTAAGCGGGACATACCGGACTC
ACAAGAGCACAAAGTCAGCGGAGATCAATGGGCAGCGAAGACGGCGGCGG
GCGGGAAAGTCTGATGCCAATCGCCGGCAGCGCCGAAAATCGGAAGCGGA
TGTCCTGGACGGTGCTCCCAATTTCCAGTATACGGGTCTAGATCGAGCCA
TAGCTGATAGCTTTTTGGCCAGGCAAGAACAGTCACAGGCGGGCAGTCAC
GTCGACTATTCGTCGTCTGCCTCCTCGGACTTGTACGGCGGTCAGAGGGC
ATCCTTCAAAACGAAGATCGTTTGCCGGGATGTGGTGATGTGAAAGCTTT
CTAGACCAT

BS13084.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-RC 627 CG17600-PC 1..627 17..643 3135 100 Plus
CG17600-RB 627 CG17600-PB 1..627 17..643 3135 100 Plus
CG17600-RA 1803 CG17600-PA 1177..1803 17..643 3135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-RC 973 CG17600-RC 141..767 17..643 3135 100 Plus
CG17600-RB 1069 CG17600-RB 237..863 17..643 3135 100 Plus
CG17600-RA 2470 CG17600-RA 1638..2264 17..643 3135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22541344..22541818 169..643 2375 100 Plus
X 23542271 X 22540938..22541068 39..169 655 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:51:02 has no hits.

BS13084.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:20 Download gff for BS13084.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RB 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:16 Download gff for BS13084.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RB 173..808 7..643 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:08 Download gff for BS13084.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 1638..2263 17..642 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:20 Download gff for BS13084.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RB 173..808 7..643 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:02 Download gff for BS13084.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 1638..2263 17..642 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:02 Download gff for BS13084.complete
Subject Subject Range Query Range Percent Splice Strand
X 22540854..22540877 17..40 100 -> Plus
X 22540940..22541068 41..169 100 -> Plus
X 22541345..22541817 170..642 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:08 Download gff for BS13084.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21942690..21942713 17..40 100 -> Plus
arm_X 21942776..21942904 41..169 100 -> Plus
arm_X 21943181..21943653 170..642 100   Plus

BS13084.pep Sequence

Translation from 16 to 642

> BS13084.pep
MSLNGSEKVNTEKLAAMWMYATQMGSLPPTVRKLTPPSRQIMLIPSTAGN
GMAPPPPTRLPPPPPGARAGLLLPVPPLPAQYRGMTLPYMRPGPGSVTYA
HPASLSGTYRTHKSTKSAEINGQRRRRRAGKSDANRRQRRKSEADVLDGA
PNFQYTGLDRAIADSFLARQEQSQAGSHVDYSSSASSDLYGGQRASFKTK
IVCRDVVM*

BS13084.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-PC 208 CG17600-PC 1..208 1..208 1083 100 Plus
CG17600-PB 208 CG17600-PB 1..208 1..208 1083 100 Plus
CG17600-PA 600 CG17600-PA 393..600 1..208 1083 100 Plus
CG17600-PD 603 CG17600-PD 393..603 1..208 1069 98.6 Plus