Clone BS13085 Report

Search the DGRC for BS13085

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG5010-RA
Protein status:BS13085.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13085.3prime Sequence

543 bp (543 high quality bases) assembled on 2006-10-13

> BS13085.3prime
ATGGTCTAGAAAGCTTCTACTGGAGATGGTGGCTCTGCTTGCACTGCCGC
AGCGCCTCGTTGAATCCCTCGCAGAGGGTAAGATCCGCCTGACCCTGGGC
GCACTGGATGAACTGTTTGAGCTCCCAGGCGCAGGCTCCCTGCGGCTCAT
TGGGCTGCTGCTGCTGGGCGTAGTATGGCTGCTGGGGGGCAGGAGCGGCT
GCCGCCGGAGCGGGAGCAGCGGCCTCCTTGTCGCCAGATCCGCTGAACAG
CGAGGTCAATCCATGACCCACGGTGTGTCCAATGGCTGAGCCCACGGCCA
CGCCTCCAGCGGTGGCGGCCATCTGCTGGAACATCGATGGCTGCTGCGGT
GCCGGCATGCCGACGGCACTGGGAGGAGCGCTCATGGGCGCCGGAACAGG
GGCAGAGGCGGCCGGTGCTGGGGCACGTGTCTGGACAGGAGCCGGGGCCG
GGGCGGGGGCACGGGCCTGCACAGGTGCGGTGCGACGAGTGGAGGGCGGG
GGACTGGCTGAACGTCCACGGCGAACCATGTCGACTGATAACT

BS13085.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5010-PA 513 CG5010-RA 1..513 529..17 2565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5010-RA 997 CG5010-RA 137..650 529..16 2570 100 Minus
CG5010-RB 1260 CG5010-RB 447..913 482..16 2335 100 Minus
CG5010-RB 1260 CG5010-RB 107..153 529..483 235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17149833..17150300 483..16 2340 100 Minus
X 23542271 X 17149137..17149183 529..483 235 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:46:17 has no hits.

BS13085.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:04 Download gff for BS13085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5010-PA 1..513 17..529 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:21 Download gff for BS13085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5010-RA 129..650 16..537 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:31:40 Download gff for BS13085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5010-RA 129..650 16..537 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:31:40 Download gff for BS13085.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17149129..17149183 483..537 92 -> Minus
X 17149834..17150300 16..482 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:21 Download gff for BS13085.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17043162..17043216 483..537 92 -> Minus
arm_X 17043867..17044333 16..482 100   Minus

BS13085.5prime Sequence

543 bp (543 high quality bases) assembled on 2006-10-13

> BS13085.5prime
GAAGTTATCAGTCGACATGGTTCGCCGTGGACGTTCAGCCAGTCCCCCGC
CCTCCACTCGTCGCACCGCACCTGTGCAGGCCCGTGCCCCCGCCCCGGCC
CCGGCTCCTGTCCAGACACGTGCCCCAGCACCGGCCGCCTCTGCCCCTGT
TCCGGCGCCCATGAGCGCTCCTCCCAGTGCCGTCGGCATGCCGGCACCGC
AGCAGCCATCGATGTTCCAGCAGATGGCCGCCACCGCTGGAGGCGTGGCC
GTGGGCTCAGCCATTGGACACACCGTGGGTCATGGATTGACCTCGCTGTT
CAGCGGATCTGGCGACAAGGAGGCCGCTGCTCCCGCTCCGGCGGCAGCCG
CTCCTGCCCCCCAGCAGCCATACTACGCCCAGCAGCAGCAGCCCAATGAG
CCGCAGGGAGCCTGCGCCTGGGAGCTCAAACAGTTCATCCAGTGCGCCCA
GGGTCAGGCGGATCTTACCCTCTGCGAGGGATTCAACGAGGCGCTGCGGC
AGTGCAAGCAGAGCCACCATCTCCAGTAGAAGCTTTCTAGACC

BS13085.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5010-PA 513 CG5010-RA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5010-RA 997 CG5010-RA 137..650 17..530 2570 100 Plus
CG5010-RB 1260 CG5010-RB 447..913 64..530 2335 100 Plus
CG5010-RB 1260 CG5010-RB 107..153 17..63 235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17149833..17150300 63..530 2340 100 Plus
X 23542271 X 17149137..17149183 17..63 235 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:20:11 has no hits.

BS13085.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:04 Download gff for BS13085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5010-PA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:59 Download gff for BS13085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5010-RA 129..650 9..530 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:32 Download gff for BS13085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5010-RA 129..650 9..530 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:32 Download gff for BS13085.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17149129..17149183 9..63 92 -> Plus
X 17149834..17150300 64..530 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:59 Download gff for BS13085.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17043162..17043216 9..63 92 -> Plus
arm_X 17043867..17044333 64..530 100   Plus

BS13085.complete Sequence

545 bp assembled on 2006-11-01

GenBank Submission: FJ637381

> BS13085.complete
GAAGTTATCAGTCGACATGGTTCGCCGTGGACGTTCAGCCAGTCCCCCGC
CCTCCACTCGTCGCACCGCACCTGTGCAGGCCCGTGCCCCCGCCCCGGCC
CCGGCTCCTGTCCAGACACGTGCCCCAGCACCGGCCGCCTCTGCCCCTGT
TCCGGCGCCCATGAGCGCTCCTCCCAGTGCCGTCGGCATGCCGGCACCGC
AGCAGCCATCGATGTTCCAGCAGATGGCCGCCACCGCTGGAGGCGTGGCC
GTGGGCTCAGCCATTGGACACACCGTGGGTCATGGATTGACCTCGCTGTT
CAGCGGATCTGGCGACAAGGAGGCCGCTGCTCCCGCTCCGGCGGCAGCCG
CTCCTGCCCCCCAGCAGCCATACTACGCCCAGCAGCAGCAGCCCAATGAG
CCGCAGGGAGCCTGCGCCTGGGAGCTCAAACAGTTCATCCAGTGCGCCCA
GGGTCAGGCGGATCTTACCCTCTGCGAGGGATTCAACGAGGCGCTGCGGC
AGTGCAAGCAGAGCCACCATCTCCAGTAGAAGCTTTCTAGACCAT

BS13085.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5010-RA 513 CG5010-PA 1..513 17..529 2565 100 Plus
CG5010-RB 369 CG5010-PB 1..369 161..529 1845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5010-RA 997 CG5010-RA 137..650 17..530 2570 100 Plus
CG5010-RB 1260 CG5010-RB 447..913 64..530 2335 100 Plus
CG5010-RB 1260 CG5010-RB 107..153 17..63 235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17149833..17150300 63..530 2340 100 Plus
X 23542271 X 17149137..17149183 17..63 235 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:04:04 has no hits.

BS13085.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:21 Download gff for BS13085.complete
Subject Subject Range Query Range Percent Splice Strand
CG5010-RA 1..513 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:17 Download gff for BS13085.complete
Subject Subject Range Query Range Percent Splice Strand
CG5010-RA 92..613 9..530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:40 Download gff for BS13085.complete
Subject Subject Range Query Range Percent Splice Strand
CG5010-RA 137..649 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:21 Download gff for BS13085.complete
Subject Subject Range Query Range Percent Splice Strand
CG5010-RA 92..613 9..530 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:49 Download gff for BS13085.complete
Subject Subject Range Query Range Percent Splice Strand
CG5010-RA 137..649 17..529 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:49 Download gff for BS13085.complete
Subject Subject Range Query Range Percent Splice Strand
X 17149137..17149183 17..63 100 -> Plus
X 17149834..17150299 64..529 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:40 Download gff for BS13085.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17043170..17043216 17..63 100 -> Plus
arm_X 17043867..17044332 64..529 100   Plus

BS13085.pep Sequence

Translation from 16 to 528

> BS13085.pep
MVRRGRSASPPPSTRRTAPVQARAPAPAPAPVQTRAPAPAASAPVPAPMS
APPSAVGMPAPQQPSMFQQMAATAGGVAVGSAIGHTVGHGLTSLFSGSGD
KEAAAPAPAAAAPAPQQPYYAQQQQPNEPQGACAWELKQFIQCAQGQADL
TLCEGFNEALRQCKQSHHLQ*

BS13085.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5010-PA 170 CG5010-PA 1..170 1..170 894 100 Plus
CG5010-PB 122 CG5010-PB 1..122 49..170 648 100 Plus
CG31007-PA 176 CG31007-PA 48..176 42..169 232 37.4 Plus
CG31008-PA 114 CG31008-PA 2..114 37..169 174 30.8 Plus