Clone BS13087 Report

Search the DGRC for BS13087

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptMal-A3-RA
Protein status:BS13087.pep: full length peptide match
Sequenced Size:1757

Clone Sequence Records

BS13087.complete Sequence

1757 bp assembled on 2009-12-07

GenBank Submission: KX802917

> BS13087.complete
GAAGTTATCAGTCGACATGTTCAAGTTGCTGGTGCTCTCGTGCCTTTTGG
CTTTGGCTCTACCTTCGCTGGCGGAGGTTGGCTGGTGGAAGACGGGTCAG
TTCTACCAGATCTATCCCAGATCTTTTAAGGATAGCGATGGCGACGGCGT
GGGAGATCTCATAGGTATTACGCAACAGCTGCCTTACCTAAAGGAAATTG
GCATCACAGCCACCTGGCTTTCCCCGATCTTCACCTCACCCATGGCTGAT
TTCGGCTACGATGTGGCTGATCTTAAGGGTATTGATCCCATATTCGGCAC
AATGGAGGATTTCGAGGCCCTGCTTGCGCGCGCCAAAGAGCTGGACATCA
AAATCATTCTGGACTTTGTGCCCAACCACACCAGTGACGAGTGCGACTGG
TTCATACGATCGGCAGCTGGCGAGGAGGAGTACAAGGATTTCTATGTTTG
GCACACCGGCAAGGTGGTCAACGGAATCCGCCAGCCACCCACCAACTGGG
TCTCCGTGTTCCGCGGATCCATGTGGACCTGGAACGAGCAACGGCAGGCG
TACTACCTCCACCAATTCCACGCCAAACAGCCCGATCTAAACTACCGCAA
CCCCAAGGTTGTTGAAGCCATGAAGGATGTACTGCGCTTCTGGCTGCGAA
AGGGGGCTTACGGCTTCCGCATCGACGCCGTTCCTCATGTCTACGAAATT
CCAGCTGATGCCGACGGCAACTGGCCCGATGAACCGCGGAACGAGGCGGT
GAGCGATCCCGAGGACTACACTTACCTGCAGCACATCTACACCACCGATC
AACCCGAGACCCTGGAGCTGGTTTACGCTTTCCGCGATGTGATCGAGGAA
ATAGACGCCGAGCTGGGTGGCGACGACCGCGTCCTGCTCACCGAGGCCTA
CTCTCCTCTGGAAGTTTTGATGCAGTACTATGGAAATGGCACTCACCTGG
GCTCCCAGATCCCCTTCAATTTCGAGCTGCTGGCCAAGATCAGCTACAGC
TCCGATGCCTACCATTACTCGGAGCTGATCCACAACTGGCTGGACAACAT
GCCAGAAGGTCAGGTGGCTAACTGGGTGTTCGGCAACCACGACCAGAGTC
GCATTGGCTCCCGATTGGGCGCCGATCGCATCGACGCCTGCAACATGATC
ATACTGGGCCTGCCCGGCGTGAGTGTGACCTACCAGGGCGAGGAGATGGG
TATGACCGACGTTTGGATCAGCTGGGAGGACACCGTGGACCCTCAAGCCT
GCCAATCGAACGAACAGGAGTTTGAGCGCCTCACTCGCGACCCAGTGCGC
ACTCCATTCCAGTGGAGCGACGAGGTCAACGCCGGGTTCTCCAACGCCTC
GGTAACCTGGCTGCCTGTGGCCAGCAACTACAAGTTGGTCAATGTGAAGA
AGGAGCGTGGAATAGCCCTTAGCCACCTGAACGTCTACAAGCAGCTGCGG
GCTCTGCGTGATGAGCCTACTTTGAAGCAGGGTGATGTCTCCGTAACAGC
CATTGGTCCAAATGTGCTGGCCTTCAAGCGATCTTTGGCGGGCTACAAGT
CGTACATCACCCTCATCAACATCAACGATGATGTGGAATCGATCAACTTG
GACTCTGTCTTCACCTCCATAACCACGCAACTGCAATATGTGGTGGTGAA
TGATAAGAGTGTGCGTCGCAAGAACGACCTCACCTTTGCCAACTCCGTGC
TGCTGTTGCCCAAGGAAGCAGTTGTGCTGAGCACAGTTTAAAAGCTTTCT
AGACCAT

BS13087.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A3-RA 1725 CG8695-PA 1..1725 17..1741 8625 100 Plus
Mal-A5-RC 1836 CG30359-PC 148..500 101..453 430 74.8 Plus
Mal-A5-RA 1893 CG30359-PA 148..500 101..453 430 74.8 Plus
Mal-A5-RC 1836 CG30359-PC 1207..1286 1160..1239 205 83.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A3-RA 1795 CG8695-RA 36..1762 16..1742 8635 100 Plus
Mal-A5-RC 1988 CG30359-RC 240..592 101..453 430 74.8 Plus
Mal-A5-RA 2045 CG30359-RA 240..592 101..453 430 74.8 Plus
Mal-A5-RC 1988 CG30359-RC 1299..1378 1160..1239 205 83.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8456281..8457649 1530..162 6845 100 Minus
2R 25286936 2R 8457707..8457857 166..16 755 100 Minus
2R 25286936 2R 8456072..8456216 1674..1530 725 100 Minus
2R 25286936 2R 8455942..8456009 1742..1675 340 100 Minus
2R 25286936 2R 8463133..8463401 185..453 340 75.1 Plus
2R 25286936 2R 8453829..8454035 185..391 315 76.8 Plus
2R 25286936 2R 8459103..8459264 293..454 300 79 Plus
2R 25286936 2R 8450653..8450711 1236..1178 205 89.8 Minus
2R 25286936 2R 8464226..8464305 1160..1239 205 83.8 Plus
2R 25286936 2R 8473222..8473295 1160..1233 190 83.8 Plus
Blast to na_te.dros performed on 2014-11-28 01:51:43 has no hits.

BS13087.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:20 Download gff for BS13087.complete
Subject Subject Range Query Range Percent Splice Strand
LvpL-RA 35..1752 22..1739 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:49 Download gff for BS13087.complete
Subject Subject Range Query Range Percent Splice Strand
Mal-A3-RA 42..1759 22..1739 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:07 Download gff for BS13087.complete
Subject Subject Range Query Range Percent Splice Strand
LvpL-RA 35..1752 22..1739 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:35 Download gff for BS13087.complete
Subject Subject Range Query Range Percent Splice Strand
Mal-A3-RA 42..1759 22..1739 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:35 Download gff for BS13087.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8455945..8456009 1675..1739 100 <- Minus
2R 8456072..8456215 1531..1674 100 <- Minus
2R 8456281..8457646 165..1530 100 <- Minus
2R 8457709..8457851 22..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:49 Download gff for BS13087.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4343450..4343514 1675..1739 100 <- Minus
arm_2R 4343577..4343720 1531..1674 100 <- Minus
arm_2R 4343786..4345151 165..1530 100 <- Minus
arm_2R 4345214..4345356 22..164 100   Minus

BS13087.3prime Sequence

791 bp (710 high quality bases) assembled on 2006-10-13

> BS13087.3prime
ATGGTCTAGAAAGCTTTTAAACTGTGCTCAGCACAACTGCTTCCTTGGGC
AACAGCAGCACGGAGTTGGCAAAGGTGAGGTCGTTCTTGCGACGCACACT
CTTATCATTCACCACCACATATTGCAGTTGCGTGGTTATGGAGGTGAAGA
CAGAGTCCAAGTTGATCGATTCCACATCATCGTTGATGTTGATGAGGGTG
ATGTACGACTTGTAGCCCGCCAAAGATCGCTTGAAGGCCAGCACATTTGG
ACCAATGGCTGTTACGGAGACATCACCCTGCTTCAAAGTAGGCTCATCAC
GCAGAGCCCGCAGCTGCTTGTAGACGTTCAGGTGGCTAAGGGCTATTCCA
CGCTCCTTCTTCACATTGACCAACTTGTAGTTGCTGGCCACAGGCAGCCA
GGTTACCGAGGCGTTGGAGAACCCGGCGTTGACCTCGTCGCTCCACTGGA
ATGGAGTGCGCACTGGGTCGCGAGTGAGGCGCTCAAACTCCTGTTCGTTC
GATTGGCAGGCTTGAGGGTCCACGGTGTCCTCCCAGCTGATCCAAACGTC
GGTCATACCCATCTCCTCGCCCTGGTAGGTCACACTCACGCCGGGCAGGC
CCAGTATGATCATGTTGCAGGCGTCGATGCGATCGGCGCCCAATCGGGAG
CCAATGCGACTCTGGTCGTGGTTGCCGAACACCCAGTTAGCCACCTGACC
TTCTGGCATGTTGTCCAGCCAGTTGTGGATCAGCTCCGAGTAATGGTAGG
CATCGGAGCTGTAGCTGATCTTGGCCAGCAGCTCGAAAATT

BS13087.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8695-PA 1725 LvpL-RA 954..1725 788..17 3860 100 Minus
CG8696-PA 1734 LvpH-RA 1186..1232 568..522 160 93.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A3-RA 1795 CG8695-RA 990..1762 788..16 3865 100 Minus
Mal-A5-RC 1988 CG30359-RC 1299..1378 598..519 205 83.8 Minus
Mal-A5-RB 2102 CG30359-RB 1356..1435 598..519 205 83.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8456281..8456841 228..788 2805 100 Plus
2R 25286936 2R 8456072..8456216 84..228 725 100 Plus
2R 25286936 2R 8455942..8456009 16..83 340 100 Plus
2R 25286936 2R 8450653..8450711 522..580 205 89.8 Plus
2R 25286936 2R 8464226..8464305 598..519 205 83.8 Minus
2R 25286936 2R 8473222..8473295 598..525 190 83.8 Minus
Blast to na_te.dros performed on 2015-02-10 18:07:19 has no hits.

BS13087.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:05 Download gff for BS13087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8695-PA 952..1725 17..791 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:33:53 Download gff for BS13087.3prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A3-RA 988..1764 12..791 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:16:48 Download gff for BS13087.3prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A3-RA 988..1764 12..791 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:16:48 Download gff for BS13087.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8455940..8456009 12..83 97 <- Plus
2R 8456072..8456215 84..227 100 <- Plus
2R 8456281..8456843 228..791 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:33:53 Download gff for BS13087.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4343445..4343514 12..83 97 <- Plus
arm_2R 4343577..4343720 84..227 100 <- Plus
arm_2R 4343786..4344348 228..791 99   Plus

BS13087.5prime Sequence

797 bp (788 high quality bases) assembled on 2006-10-13

> BS13087.5prime
GAAGTTATCAGTCGACATGTTCAAGTTGCTGGTGCTCTCGTGCCTTTTGG
CTTTGGCTCTACCTTCGCTGGCGGAGGTTGGCTGGTGGAAGACGGGTCAG
TTCTACCAGATCTATCCCAGATCTTTTAAGGATAGCGATGGCGACGGCGT
GGGAGATCTCATAGGTATTACGCAACAGCTGCCTTACCTAAAGGAAATTG
GCATCACAGCCACCTGGCTTTCCCCGATCTTCACCTCACCCATGGCTGAT
TTCGGCTACGATGTGGCTGATCTTAAGGGTATTGATCCCATATTCGGCAC
AATGGAGGATTTCGAGGCCCTGCTTGCGCGCGCCAAAGAGCTGGACATCA
AAATCATTCTGGACTTTGTGCCCAACCACACCAGTGACGAGTGCGACTGG
TTCATACGATCGGCAGCTGGCGAGGAGGAGTACAAGGATTTCTATGTTTG
GCACACCGGCAAGGTGGTCAACGGAATCCGCCAGCCACCCACCAACTGGG
TCTCCGTGTTCCGCGGATCCATGTGGACCTGGAACGAGCAACGGCAGGCG
TACTACCTCCACCAATTCCACGCCAAACAGCCCGATCTAAACTACCGCAA
CCCCAAGGTTGTTGAAGCCATGAAGGATGTACTGCGCTTCTGGCTGCGAA
AGGGGGCTTACGGCTTCCGCATCGACGCCGTTCCTCATGTCTACGAAATT
CCAGCTGATGCCGACGGCAACTGGCCCGATGAACCGCGGAACGAGGCGGT
GAGCGATCCCGAGGACTACACTTACCTGCAGCACATCTACACCACCG

BS13087.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8695-PA 1725 LvpL-RA 1..781 17..797 3905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A3-RA 1795 CG8695-RA 36..817 16..797 3910 100 Plus
Mal-A5-RC 1988 CG30359-RC 240..592 101..453 430 75.1 Plus
Mal-A5-RA 2045 CG30359-RA 240..592 101..453 430 75.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8457014..8457649 797..162 3180 100 Minus
2R 25286936 2R 8457707..8457857 166..16 755 100 Minus
2R 25286936 2R 8463133..8463401 185..453 340 75.1 Plus
2R 25286936 2R 8459103..8459264 293..454 300 79 Plus
Blast to na_te.dros performed on 2015-02-13 15:49:34 has no hits.

BS13087.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:05 Download gff for BS13087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8695-PA 1..781 17..797 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:46:34 Download gff for BS13087.5prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A3-RA 33..817 10..797 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:13:51 Download gff for BS13087.5prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A3-RA 33..817 10..797 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:13:51 Download gff for BS13087.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8457014..8457646 165..797 100 <- Minus
2R 8457709..8457860 10..164 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:46:34 Download gff for BS13087.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4344519..4345151 165..797 100 <- Minus
arm_2R 4345214..4345365 10..164 98   Minus

BS13087.pep Sequence

Translation from 16 to 1740

> BS13087.pep
MFKLLVLSCLLALALPSLAEVGWWKTGQFYQIYPRSFKDSDGDGVGDLIG
ITQQLPYLKEIGITATWLSPIFTSPMADFGYDVADLKGIDPIFGTMEDFE
ALLARAKELDIKIILDFVPNHTSDECDWFIRSAAGEEEYKDFYVWHTGKV
VNGIRQPPTNWVSVFRGSMWTWNEQRQAYYLHQFHAKQPDLNYRNPKVVE
AMKDVLRFWLRKGAYGFRIDAVPHVYEIPADADGNWPDEPRNEAVSDPED
YTYLQHIYTTDQPETLELVYAFRDVIEEIDAELGGDDRVLLTEAYSPLEV
LMQYYGNGTHLGSQIPFNFELLAKISYSSDAYHYSELIHNWLDNMPEGQV
ANWVFGNHDQSRIGSRLGADRIDACNMIILGLPGVSVTYQGEEMGMTDVW
ISWEDTVDPQACQSNEQEFERLTRDPVRTPFQWSDEVNAGFSNASVTWLP
VASNYKLVNVKKERGIALSHLNVYKQLRALRDEPTLKQGDVSVTAIGPNV
LAFKRSLAGYKSYITLININDDVESINLDSVFTSITTQLQYVVVNDKSVR
RKNDLTFANSVLLLPKEAVVLSTV*

BS13087.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A3-PA 574 CG8695-PA 1..574 1..574 3048 100 Plus
Mal-A4-PA 579 CG8693-PA 7..573 7..571 1923 60.1 Plus
Mal-A5-PA 630 CG30359-PA 40..595 19..573 1872 62.1 Plus
Mal-A5-PC 611 CG30359-PC 40..576 19..573 1785 59.8 Plus
Mal-A5-PB 534 CG30359-PB 1..499 76..573 1611 59.9 Plus