Clone Sequence Records
BS13087.complete Sequence
1757 bp assembled on 2009-12-07
GenBank Submission: KX802917
> BS13087.complete
GAAGTTATCAGTCGACATGTTCAAGTTGCTGGTGCTCTCGTGCCTTTTGG
CTTTGGCTCTACCTTCGCTGGCGGAGGTTGGCTGGTGGAAGACGGGTCAG
TTCTACCAGATCTATCCCAGATCTTTTAAGGATAGCGATGGCGACGGCGT
GGGAGATCTCATAGGTATTACGCAACAGCTGCCTTACCTAAAGGAAATTG
GCATCACAGCCACCTGGCTTTCCCCGATCTTCACCTCACCCATGGCTGAT
TTCGGCTACGATGTGGCTGATCTTAAGGGTATTGATCCCATATTCGGCAC
AATGGAGGATTTCGAGGCCCTGCTTGCGCGCGCCAAAGAGCTGGACATCA
AAATCATTCTGGACTTTGTGCCCAACCACACCAGTGACGAGTGCGACTGG
TTCATACGATCGGCAGCTGGCGAGGAGGAGTACAAGGATTTCTATGTTTG
GCACACCGGCAAGGTGGTCAACGGAATCCGCCAGCCACCCACCAACTGGG
TCTCCGTGTTCCGCGGATCCATGTGGACCTGGAACGAGCAACGGCAGGCG
TACTACCTCCACCAATTCCACGCCAAACAGCCCGATCTAAACTACCGCAA
CCCCAAGGTTGTTGAAGCCATGAAGGATGTACTGCGCTTCTGGCTGCGAA
AGGGGGCTTACGGCTTCCGCATCGACGCCGTTCCTCATGTCTACGAAATT
CCAGCTGATGCCGACGGCAACTGGCCCGATGAACCGCGGAACGAGGCGGT
GAGCGATCCCGAGGACTACACTTACCTGCAGCACATCTACACCACCGATC
AACCCGAGACCCTGGAGCTGGTTTACGCTTTCCGCGATGTGATCGAGGAA
ATAGACGCCGAGCTGGGTGGCGACGACCGCGTCCTGCTCACCGAGGCCTA
CTCTCCTCTGGAAGTTTTGATGCAGTACTATGGAAATGGCACTCACCTGG
GCTCCCAGATCCCCTTCAATTTCGAGCTGCTGGCCAAGATCAGCTACAGC
TCCGATGCCTACCATTACTCGGAGCTGATCCACAACTGGCTGGACAACAT
GCCAGAAGGTCAGGTGGCTAACTGGGTGTTCGGCAACCACGACCAGAGTC
GCATTGGCTCCCGATTGGGCGCCGATCGCATCGACGCCTGCAACATGATC
ATACTGGGCCTGCCCGGCGTGAGTGTGACCTACCAGGGCGAGGAGATGGG
TATGACCGACGTTTGGATCAGCTGGGAGGACACCGTGGACCCTCAAGCCT
GCCAATCGAACGAACAGGAGTTTGAGCGCCTCACTCGCGACCCAGTGCGC
ACTCCATTCCAGTGGAGCGACGAGGTCAACGCCGGGTTCTCCAACGCCTC
GGTAACCTGGCTGCCTGTGGCCAGCAACTACAAGTTGGTCAATGTGAAGA
AGGAGCGTGGAATAGCCCTTAGCCACCTGAACGTCTACAAGCAGCTGCGG
GCTCTGCGTGATGAGCCTACTTTGAAGCAGGGTGATGTCTCCGTAACAGC
CATTGGTCCAAATGTGCTGGCCTTCAAGCGATCTTTGGCGGGCTACAAGT
CGTACATCACCCTCATCAACATCAACGATGATGTGGAATCGATCAACTTG
GACTCTGTCTTCACCTCCATAACCACGCAACTGCAATATGTGGTGGTGAA
TGATAAGAGTGTGCGTCGCAAGAACGACCTCACCTTTGCCAACTCCGTGC
TGCTGTTGCCCAAGGAAGCAGTTGTGCTGAGCACAGTTTAAAAGCTTTCT
AGACCAT
BS13087.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:51:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A3-RA | 1725 | CG8695-PA | 1..1725 | 17..1741 | 8625 | 100 | Plus |
Mal-A5-RC | 1836 | CG30359-PC | 148..500 | 101..453 | 430 | 74.8 | Plus |
Mal-A5-RA | 1893 | CG30359-PA | 148..500 | 101..453 | 430 | 74.8 | Plus |
Mal-A5-RC | 1836 | CG30359-PC | 1207..1286 | 1160..1239 | 205 | 83.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A3-RA | 1795 | CG8695-RA | 36..1762 | 16..1742 | 8635 | 100 | Plus |
Mal-A5-RC | 1988 | CG30359-RC | 240..592 | 101..453 | 430 | 74.8 | Plus |
Mal-A5-RA | 2045 | CG30359-RA | 240..592 | 101..453 | 430 | 74.8 | Plus |
Mal-A5-RC | 1988 | CG30359-RC | 1299..1378 | 1160..1239 | 205 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8456281..8457649 | 1530..162 | 6845 | 100 | Minus |
2R | 25286936 | 2R | 8457707..8457857 | 166..16 | 755 | 100 | Minus |
2R | 25286936 | 2R | 8456072..8456216 | 1674..1530 | 725 | 100 | Minus |
2R | 25286936 | 2R | 8455942..8456009 | 1742..1675 | 340 | 100 | Minus |
2R | 25286936 | 2R | 8463133..8463401 | 185..453 | 340 | 75.1 | Plus |
2R | 25286936 | 2R | 8453829..8454035 | 185..391 | 315 | 76.8 | Plus |
2R | 25286936 | 2R | 8459103..8459264 | 293..454 | 300 | 79 | Plus |
2R | 25286936 | 2R | 8450653..8450711 | 1236..1178 | 205 | 89.8 | Minus |
2R | 25286936 | 2R | 8464226..8464305 | 1160..1239 | 205 | 83.8 | Plus |
2R | 25286936 | 2R | 8473222..8473295 | 1160..1233 | 190 | 83.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:51:43 has no hits.
BS13087.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:20 Download gff for
BS13087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LvpL-RA | 35..1752 | 22..1739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:49 Download gff for
BS13087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A3-RA | 42..1759 | 22..1739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:07 Download gff for
BS13087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LvpL-RA | 35..1752 | 22..1739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:35 Download gff for
BS13087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A3-RA | 42..1759 | 22..1739 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:35 Download gff for
BS13087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8455945..8456009 | 1675..1739 | 100 | <- | Minus |
2R | 8456072..8456215 | 1531..1674 | 100 | <- | Minus |
2R | 8456281..8457646 | 165..1530 | 100 | <- | Minus |
2R | 8457709..8457851 | 22..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:49 Download gff for
BS13087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4343450..4343514 | 1675..1739 | 100 | <- | Minus |
arm_2R | 4343577..4343720 | 1531..1674 | 100 | <- | Minus |
arm_2R | 4343786..4345151 | 165..1530 | 100 | <- | Minus |
arm_2R | 4345214..4345356 | 22..164 | 100 | | Minus |
BS13087.3prime Sequence
791 bp (710 high quality bases) assembled on 2006-10-13
> BS13087.3prime
ATGGTCTAGAAAGCTTTTAAACTGTGCTCAGCACAACTGCTTCCTTGGGC
AACAGCAGCACGGAGTTGGCAAAGGTGAGGTCGTTCTTGCGACGCACACT
CTTATCATTCACCACCACATATTGCAGTTGCGTGGTTATGGAGGTGAAGA
CAGAGTCCAAGTTGATCGATTCCACATCATCGTTGATGTTGATGAGGGTG
ATGTACGACTTGTAGCCCGCCAAAGATCGCTTGAAGGCCAGCACATTTGG
ACCAATGGCTGTTACGGAGACATCACCCTGCTTCAAAGTAGGCTCATCAC
GCAGAGCCCGCAGCTGCTTGTAGACGTTCAGGTGGCTAAGGGCTATTCCA
CGCTCCTTCTTCACATTGACCAACTTGTAGTTGCTGGCCACAGGCAGCCA
GGTTACCGAGGCGTTGGAGAACCCGGCGTTGACCTCGTCGCTCCACTGGA
ATGGAGTGCGCACTGGGTCGCGAGTGAGGCGCTCAAACTCCTGTTCGTTC
GATTGGCAGGCTTGAGGGTCCACGGTGTCCTCCCAGCTGATCCAAACGTC
GGTCATACCCATCTCCTCGCCCTGGTAGGTCACACTCACGCCGGGCAGGC
CCAGTATGATCATGTTGCAGGCGTCGATGCGATCGGCGCCCAATCGGGAG
CCAATGCGACTCTGGTCGTGGTTGCCGAACACCCAGTTAGCCACCTGACC
TTCTGGCATGTTGTCCAGCCAGTTGTGGATCAGCTCCGAGTAATGGTAGG
CATCGGAGCTGTAGCTGATCTTGGCCAGCAGCTCGAAAATT
BS13087.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8695-PA | 1725 | LvpL-RA | 954..1725 | 788..17 | 3860 | 100 | Minus |
CG8696-PA | 1734 | LvpH-RA | 1186..1232 | 568..522 | 160 | 93.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A3-RA | 1795 | CG8695-RA | 990..1762 | 788..16 | 3865 | 100 | Minus |
Mal-A5-RC | 1988 | CG30359-RC | 1299..1378 | 598..519 | 205 | 83.8 | Minus |
Mal-A5-RB | 2102 | CG30359-RB | 1356..1435 | 598..519 | 205 | 83.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8456281..8456841 | 228..788 | 2805 | 100 | Plus |
2R | 25286936 | 2R | 8456072..8456216 | 84..228 | 725 | 100 | Plus |
2R | 25286936 | 2R | 8455942..8456009 | 16..83 | 340 | 100 | Plus |
2R | 25286936 | 2R | 8450653..8450711 | 522..580 | 205 | 89.8 | Plus |
2R | 25286936 | 2R | 8464226..8464305 | 598..519 | 205 | 83.8 | Minus |
2R | 25286936 | 2R | 8473222..8473295 | 598..525 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:07:19 has no hits.
BS13087.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:05 Download gff for
BS13087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8695-PA | 952..1725 | 17..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:33:53 Download gff for
BS13087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A3-RA | 988..1764 | 12..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:16:48 Download gff for
BS13087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A3-RA | 988..1764 | 12..791 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:16:48 Download gff for
BS13087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8455940..8456009 | 12..83 | 97 | <- | Plus |
2R | 8456072..8456215 | 84..227 | 100 | <- | Plus |
2R | 8456281..8456843 | 228..791 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:33:53 Download gff for
BS13087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4343445..4343514 | 12..83 | 97 | <- | Plus |
arm_2R | 4343577..4343720 | 84..227 | 100 | <- | Plus |
arm_2R | 4343786..4344348 | 228..791 | 99 | | Plus |
BS13087.5prime Sequence
797 bp (788 high quality bases) assembled on 2006-10-13
> BS13087.5prime
GAAGTTATCAGTCGACATGTTCAAGTTGCTGGTGCTCTCGTGCCTTTTGG
CTTTGGCTCTACCTTCGCTGGCGGAGGTTGGCTGGTGGAAGACGGGTCAG
TTCTACCAGATCTATCCCAGATCTTTTAAGGATAGCGATGGCGACGGCGT
GGGAGATCTCATAGGTATTACGCAACAGCTGCCTTACCTAAAGGAAATTG
GCATCACAGCCACCTGGCTTTCCCCGATCTTCACCTCACCCATGGCTGAT
TTCGGCTACGATGTGGCTGATCTTAAGGGTATTGATCCCATATTCGGCAC
AATGGAGGATTTCGAGGCCCTGCTTGCGCGCGCCAAAGAGCTGGACATCA
AAATCATTCTGGACTTTGTGCCCAACCACACCAGTGACGAGTGCGACTGG
TTCATACGATCGGCAGCTGGCGAGGAGGAGTACAAGGATTTCTATGTTTG
GCACACCGGCAAGGTGGTCAACGGAATCCGCCAGCCACCCACCAACTGGG
TCTCCGTGTTCCGCGGATCCATGTGGACCTGGAACGAGCAACGGCAGGCG
TACTACCTCCACCAATTCCACGCCAAACAGCCCGATCTAAACTACCGCAA
CCCCAAGGTTGTTGAAGCCATGAAGGATGTACTGCGCTTCTGGCTGCGAA
AGGGGGCTTACGGCTTCCGCATCGACGCCGTTCCTCATGTCTACGAAATT
CCAGCTGATGCCGACGGCAACTGGCCCGATGAACCGCGGAACGAGGCGGT
GAGCGATCCCGAGGACTACACTTACCTGCAGCACATCTACACCACCG
BS13087.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:23:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8695-PA | 1725 | LvpL-RA | 1..781 | 17..797 | 3905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A3-RA | 1795 | CG8695-RA | 36..817 | 16..797 | 3910 | 100 | Plus |
Mal-A5-RC | 1988 | CG30359-RC | 240..592 | 101..453 | 430 | 75.1 | Plus |
Mal-A5-RA | 2045 | CG30359-RA | 240..592 | 101..453 | 430 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8457014..8457649 | 797..162 | 3180 | 100 | Minus |
2R | 25286936 | 2R | 8457707..8457857 | 166..16 | 755 | 100 | Minus |
2R | 25286936 | 2R | 8463133..8463401 | 185..453 | 340 | 75.1 | Plus |
2R | 25286936 | 2R | 8459103..8459264 | 293..454 | 300 | 79 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:49:34 has no hits.
BS13087.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:05 Download gff for
BS13087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8695-PA | 1..781 | 17..797 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:46:34 Download gff for
BS13087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A3-RA | 33..817 | 10..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:13:51 Download gff for
BS13087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A3-RA | 33..817 | 10..797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:13:51 Download gff for
BS13087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8457014..8457646 | 165..797 | 100 | <- | Minus |
2R | 8457709..8457860 | 10..164 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:46:34 Download gff for
BS13087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4344519..4345151 | 165..797 | 100 | <- | Minus |
arm_2R | 4345214..4345365 | 10..164 | 98 | | Minus |
BS13087.pep Sequence
Translation from 16 to 1740
> BS13087.pep
MFKLLVLSCLLALALPSLAEVGWWKTGQFYQIYPRSFKDSDGDGVGDLIG
ITQQLPYLKEIGITATWLSPIFTSPMADFGYDVADLKGIDPIFGTMEDFE
ALLARAKELDIKIILDFVPNHTSDECDWFIRSAAGEEEYKDFYVWHTGKV
VNGIRQPPTNWVSVFRGSMWTWNEQRQAYYLHQFHAKQPDLNYRNPKVVE
AMKDVLRFWLRKGAYGFRIDAVPHVYEIPADADGNWPDEPRNEAVSDPED
YTYLQHIYTTDQPETLELVYAFRDVIEEIDAELGGDDRVLLTEAYSPLEV
LMQYYGNGTHLGSQIPFNFELLAKISYSSDAYHYSELIHNWLDNMPEGQV
ANWVFGNHDQSRIGSRLGADRIDACNMIILGLPGVSVTYQGEEMGMTDVW
ISWEDTVDPQACQSNEQEFERLTRDPVRTPFQWSDEVNAGFSNASVTWLP
VASNYKLVNVKKERGIALSHLNVYKQLRALRDEPTLKQGDVSVTAIGPNV
LAFKRSLAGYKSYITLININDDVESINLDSVFTSITTQLQYVVVNDKSVR
RKNDLTFANSVLLLPKEAVVLSTV*
BS13087.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A3-PA | 574 | CG8695-PA | 1..574 | 1..574 | 3048 | 100 | Plus |
Mal-A4-PA | 579 | CG8693-PA | 7..573 | 7..571 | 1923 | 60.1 | Plus |
Mal-A5-PA | 630 | CG30359-PA | 40..595 | 19..573 | 1872 | 62.1 | Plus |
Mal-A5-PC | 611 | CG30359-PC | 40..576 | 19..573 | 1785 | 59.8 | Plus |
Mal-A5-PB | 534 | CG30359-PB | 1..499 | 76..573 | 1611 | 59.9 | Plus |