Clone Sequence Records
BS13088.3prime Sequence
711 bp (706 high quality bases) assembled on 2006-10-13
> BS13088.3prime
ATGGTCTAGAAAGCTTTCAGGAGCGAAGATCCGTGAGAGGGACGTACATT
ACGCCCATGAGACGTGTCATCTCCACCTTCCCATTGGCGTCCTTGTCGTA
CTGTTGCATGTACTGAGACCCGCCGTCGGGACCGACTGGAACTATCAGGC
GTCCGCCGCTGGCCAGTTGGTTGATGAGTTCGGTGGGTGTGTCGGGAGCA
GCTGCTCCTACATGGATTGCATTATACGGGGCGTTCGGGGGGTATCCCTT
GCGGCCGTCACCCTCGACGATCAGCAACTGGCCGGAGTCCAGCATGCTAC
GGTCGTCGGTGTTTAAGTTGGCCTTGCTCCGCCGCACCAGCTCTGCCTGG
TGCTCTATGCCCACGATTCGGGTGTCCGCATCAACGCCCTTAGCCTTGAT
GTAACGATAGAAGCAGGCTGTGAGGTAGCCAGATCCAGAGCCCACATCCA
GTATACGTGCACCGGGCTTCAAGTGGTCGCGTAGATACTCCAAGGCGAAG
GCATGCATGTGAGGAGCACTGATGGTGACACCTCCTCCAATGGGTTGCGG
GGCGTCCATGTAGGGGTTGCGCGGAGAGTAGTGCTTGCGGTCGGTTTCCT
TCATCGCCTGGGCCACCGCATCACTTGCAATGACGCCGTGATCCTTCAGT
TGGCGAATCAGGTCTTCATTATTGGCTCCCACGGATCGCCACGCCATGTC
GACTGATAACT
BS13088.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2152-PA | 681 | Pcmt-RA | 1..681 | 697..17 | 3405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pcmt-RA | 953 | CG2152-RA | 133..814 | 698..17 | 3410 | 100 | Minus |
Pcmt-RC | 998 | CG2152-RC | 133..730 | 698..101 | 2990 | 100 | Minus |
Pcmt-RC | 998 | CG2152-RC | 776..859 | 100..17 | 420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5553271..5553676 | 101..506 | 2030 | 100 | Plus |
3R | 32079331 | 3R | 5553931..5554068 | 506..643 | 690 | 100 | Plus |
3R | 32079331 | 3R | 5552962..5553049 | 17..104 | 440 | 100 | Plus |
3R | 32079331 | 3R | 5554129..5554184 | 643..698 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:08:29 has no hits.
BS13088.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:06 Download gff for
BS13088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2152-PA | 1..681 | 17..697 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:30 Download gff for
BS13088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcmt-RA | 129..818 | 13..706 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:43 Download gff for
BS13088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcmt-RA | 129..818 | 13..706 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:43 Download gff for
BS13088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5552958..5553045 | 13..100 | 97 | <- | Plus |
3R | 5553271..5553675 | 101..505 | 100 | <- | Plus |
3R | 5553931..5554067 | 506..642 | 100 | <- | Plus |
3R | 5554129..5554188 | 643..706 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:30 Download gff for
BS13088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1378680..1378767 | 13..100 | 97 | <- | Plus |
arm_3R | 1378993..1379397 | 101..505 | 100 | <- | Plus |
arm_3R | 1379653..1379789 | 506..642 | 100 | <- | Plus |
arm_3R | 1379851..1379910 | 643..706 | 93 | | Plus |
BS13088.5prime Sequence
711 bp (711 high quality bases) assembled on 2006-10-13
> BS13088.5prime
GAAGTTATCAGTCGACATGGCGTGGCGATCCGTGGGAGCCAATAATGAAG
ACCTGATTCGCCAACTGAAGGATCACGGCGTCATTGCAAGTGATGCGGTG
GCCCAGGCGATGAAGGAAACCGACCGCAAGCACTACTCTCCGCGCAACCC
CTACATGGACGCCCCGCAACCCATTGGAGGAGGTGTCACCATCAGTGCTC
CTCACATGCATGCCTTCGCCTTGGAGTATCTACGCGACCACTTGAAGCCC
GGTGCACGTATACTGGATGTGGGCTCTGGATCTGGCTACCTCACAGCCTG
CTTCTATCGTTACATCAAGGCTAAGGGCGTTGATGCGGACACCCGAATCG
TGGGCATAGAGCACCAGGCAGAGCTGGTGCGGCGGAGCAAGGCCAACTTA
AACACCGACGACCGTAGCATGCTGGACTCCGGCCAGTTGCTGATCGTCGA
GGGTGACGGCCGCAAGGGATACCCCCCGAACGCCCCGTATAATGCAATCC
ATGTAGGAGCAGCTGCTCCCGACACACCCACCGAACTCATCAACCAACTG
GCCAGCGGCGGACGCCTGATAGTTCCAGTCGGTCCCGACGGCGGGTCTCA
GTACATGCAACAGTACGACAAGGACGCCAATGGGAAGGTGGAGATGACAC
GTCTCATGGGCGTAATGTACGTCCCTCTCACGGATCTTCGCTCCTGAAAG
CTTTCTAGACC
BS13088.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2152-PA | 681 | Pcmt-RA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:20:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pcmt-RA | 953 | CG2152-RA | 133..814 | 16..697 | 3410 | 100 | Plus |
Pcmt-RC | 998 | CG2152-RC | 133..730 | 16..613 | 2990 | 100 | Plus |
Pcmt-RC | 998 | CG2152-RC | 776..859 | 614..697 | 420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:20:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5553271..5553676 | 613..208 | 2030 | 100 | Minus |
3R | 32079331 | 3R | 5553931..5554068 | 208..71 | 690 | 100 | Minus |
3R | 32079331 | 3R | 5552962..5553049 | 697..610 | 440 | 100 | Minus |
3R | 32079331 | 3R | 5554129..5554184 | 71..16 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:20:22 has no hits.
BS13088.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:06 Download gff for
BS13088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2152-PA | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:02 Download gff for
BS13088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcmt-RA | 129..818 | 8..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:34 Download gff for
BS13088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcmt-RA | 129..818 | 8..701 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:34 Download gff for
BS13088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5552958..5553045 | 614..701 | 97 | <- | Minus |
3R | 5553271..5553675 | 209..613 | 100 | <- | Minus |
3R | 5553931..5554067 | 72..208 | 100 | <- | Minus |
3R | 5554129..5554188 | 8..71 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:02 Download gff for
BS13088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1378680..1378767 | 614..701 | 97 | <- | Minus |
arm_3R | 1378993..1379397 | 209..613 | 100 | <- | Minus |
arm_3R | 1379653..1379789 | 72..208 | 100 | <- | Minus |
arm_3R | 1379851..1379910 | 8..71 | 93 | | Minus |
BS13088.complete Sequence
713 bp assembled on 2006-11-01
GenBank Submission: FJ637382
> BS13088.complete
GAAGTTATCAGTCGACATGGCGTGGCGATCCGTGGGAGCCAATAATGAAG
ACCTGATTCGCCAACTGAAGGATCACGGCGTCATTGCAAGTGATGCGGTG
GCCCAGGCGATGAAGGAAACCGACCGCAAGCACTACTCTCCGCGCAACCC
CTACATGGACGCCCCGCAACCCATTGGAGGAGGTGTCACCATCAGTGCTC
CTCACATGCATGCCTTCGCCTTGGAGTATCTACGCGACCACTTGAAGCCC
GGTGCACGTATACTGGATGTGGGCTCTGGATCTGGCTACCTCACAGCCTG
CTTCTATCGTTACATCAAGGCTAAGGGCGTTGATGCGGACACCCGAATCG
TGGGCATAGAGCACCAGGCAGAGCTGGTGCGGCGGAGCAAGGCCAACTTA
AACACCGACGACCGTAGCATGCTGGACTCCGGCCAGTTGCTGATCGTCGA
GGGTGACGGCCGCAAGGGATACCCCCCGAACGCCCCGTATAATGCAATCC
ATGTAGGAGCAGCTGCTCCCGACACACCCACCGAACTCATCAACCAACTG
GCCAGCGGCGGACGCCTGATAGTTCCAGTCGGTCCCGACGGCGGGTCTCA
GTACATGCAACAGTACGACAAGGACGCCAATGGGAAGGTGGAGATGACAC
GTCTCATGGGCGTAATGTACGTCCCTCTCACGGATCTTCGCTCCTGAAAG
CTTTCTAGACCAT
BS13088.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pcmt-RA | 681 | CG2152-PA | 1..681 | 17..697 | 3405 | 100 | Plus |
Pcmt-RC | 612 | CG2152-PC | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pcmt-RA | 953 | CG2152-RA | 133..814 | 16..697 | 3410 | 100 | Plus |
Pcmt-RC | 998 | CG2152-RC | 133..730 | 16..613 | 2990 | 100 | Plus |
Pcmt-RC | 998 | CG2152-RC | 776..859 | 614..697 | 420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5553271..5553676 | 613..208 | 2030 | 100 | Minus |
3R | 32079331 | 3R | 5553931..5554068 | 208..71 | 690 | 100 | Minus |
3R | 32079331 | 3R | 5552962..5553049 | 697..610 | 440 | 100 | Minus |
3R | 32079331 | 3R | 5554129..5554184 | 71..16 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:29:30 has no hits.
BS13088.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:22 Download gff for
BS13088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcmt-RA | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:19 Download gff for
BS13088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcmt-RA | 124..813 | 8..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:19 Download gff for
BS13088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcmt-RA | 134..813 | 17..696 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:23 Download gff for
BS13088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcmt-RA | 124..813 | 8..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:24 Download gff for
BS13088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pcmt-RA | 134..813 | 17..696 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:24 Download gff for
BS13088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5552963..5553045 | 614..696 | 100 | <- | Minus |
3R | 5553271..5553675 | 209..613 | 100 | <- | Minus |
3R | 5553931..5554067 | 72..208 | 100 | <- | Minus |
3R | 5554129..5554183 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:19 Download gff for
BS13088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1378685..1378767 | 614..696 | 100 | <- | Minus |
arm_3R | 1378993..1379397 | 209..613 | 100 | <- | Minus |
arm_3R | 1379653..1379789 | 72..208 | 100 | <- | Minus |
arm_3R | 1379851..1379905 | 17..71 | 100 | | Minus |
BS13088.pep Sequence
Translation from 16 to 696
> BS13088.pep
MAWRSVGANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAP
QPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYI
KAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK
GYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQY
DKDANGKVEMTRLMGVMYVPLTDLRS*
BS13088.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pcmt-PA | 226 | CG2152-PA | 1..226 | 1..226 | 1183 | 100 | Plus |
Pcmt-PC | 203 | CG2152-PC | 1..199 | 1..199 | 1044 | 100 | Plus |