Clone BS13088 Report

Search the DGRC for BS13088

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptPcmt-RA
Protein status:BS13088.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13088.3prime Sequence

711 bp (706 high quality bases) assembled on 2006-10-13

> BS13088.3prime
ATGGTCTAGAAAGCTTTCAGGAGCGAAGATCCGTGAGAGGGACGTACATT
ACGCCCATGAGACGTGTCATCTCCACCTTCCCATTGGCGTCCTTGTCGTA
CTGTTGCATGTACTGAGACCCGCCGTCGGGACCGACTGGAACTATCAGGC
GTCCGCCGCTGGCCAGTTGGTTGATGAGTTCGGTGGGTGTGTCGGGAGCA
GCTGCTCCTACATGGATTGCATTATACGGGGCGTTCGGGGGGTATCCCTT
GCGGCCGTCACCCTCGACGATCAGCAACTGGCCGGAGTCCAGCATGCTAC
GGTCGTCGGTGTTTAAGTTGGCCTTGCTCCGCCGCACCAGCTCTGCCTGG
TGCTCTATGCCCACGATTCGGGTGTCCGCATCAACGCCCTTAGCCTTGAT
GTAACGATAGAAGCAGGCTGTGAGGTAGCCAGATCCAGAGCCCACATCCA
GTATACGTGCACCGGGCTTCAAGTGGTCGCGTAGATACTCCAAGGCGAAG
GCATGCATGTGAGGAGCACTGATGGTGACACCTCCTCCAATGGGTTGCGG
GGCGTCCATGTAGGGGTTGCGCGGAGAGTAGTGCTTGCGGTCGGTTTCCT
TCATCGCCTGGGCCACCGCATCACTTGCAATGACGCCGTGATCCTTCAGT
TGGCGAATCAGGTCTTCATTATTGGCTCCCACGGATCGCCACGCCATGTC
GACTGATAACT

BS13088.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG2152-PA 681 Pcmt-RA 1..681 697..17 3405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
Pcmt-RA 953 CG2152-RA 133..814 698..17 3410 100 Minus
Pcmt-RC 998 CG2152-RC 133..730 698..101 2990 100 Minus
Pcmt-RC 998 CG2152-RC 776..859 100..17 420 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5553271..5553676 101..506 2030 100 Plus
3R 32079331 3R 5553931..5554068 506..643 690 100 Plus
3R 32079331 3R 5552962..5553049 17..104 440 100 Plus
3R 32079331 3R 5554129..5554184 643..698 280 100 Plus
Blast to na_te.dros performed on 2015-01-30 18:08:29 has no hits.

BS13088.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:06 Download gff for BS13088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2152-PA 1..681 17..697 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:30 Download gff for BS13088.3prime
Subject Subject Range Query Range Percent Splice Strand
Pcmt-RA 129..818 13..706 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:43 Download gff for BS13088.3prime
Subject Subject Range Query Range Percent Splice Strand
Pcmt-RA 129..818 13..706 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:43 Download gff for BS13088.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5552958..5553045 13..100 97 <- Plus
3R 5553271..5553675 101..505 100 <- Plus
3R 5553931..5554067 506..642 100 <- Plus
3R 5554129..5554188 643..706 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:30 Download gff for BS13088.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1378680..1378767 13..100 97 <- Plus
arm_3R 1378993..1379397 101..505 100 <- Plus
arm_3R 1379653..1379789 506..642 100 <- Plus
arm_3R 1379851..1379910 643..706 93   Plus

BS13088.5prime Sequence

711 bp (711 high quality bases) assembled on 2006-10-13

> BS13088.5prime
GAAGTTATCAGTCGACATGGCGTGGCGATCCGTGGGAGCCAATAATGAAG
ACCTGATTCGCCAACTGAAGGATCACGGCGTCATTGCAAGTGATGCGGTG
GCCCAGGCGATGAAGGAAACCGACCGCAAGCACTACTCTCCGCGCAACCC
CTACATGGACGCCCCGCAACCCATTGGAGGAGGTGTCACCATCAGTGCTC
CTCACATGCATGCCTTCGCCTTGGAGTATCTACGCGACCACTTGAAGCCC
GGTGCACGTATACTGGATGTGGGCTCTGGATCTGGCTACCTCACAGCCTG
CTTCTATCGTTACATCAAGGCTAAGGGCGTTGATGCGGACACCCGAATCG
TGGGCATAGAGCACCAGGCAGAGCTGGTGCGGCGGAGCAAGGCCAACTTA
AACACCGACGACCGTAGCATGCTGGACTCCGGCCAGTTGCTGATCGTCGA
GGGTGACGGCCGCAAGGGATACCCCCCGAACGCCCCGTATAATGCAATCC
ATGTAGGAGCAGCTGCTCCCGACACACCCACCGAACTCATCAACCAACTG
GCCAGCGGCGGACGCCTGATAGTTCCAGTCGGTCCCGACGGCGGGTCTCA
GTACATGCAACAGTACGACAAGGACGCCAATGGGAAGGTGGAGATGACAC
GTCTCATGGGCGTAATGTACGTCCCTCTCACGGATCTTCGCTCCTGAAAG
CTTTCTAGACC

BS13088.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2152-PA 681 Pcmt-RA 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
Pcmt-RA 953 CG2152-RA 133..814 16..697 3410 100 Plus
Pcmt-RC 998 CG2152-RC 133..730 16..613 2990 100 Plus
Pcmt-RC 998 CG2152-RC 776..859 614..697 420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5553271..5553676 613..208 2030 100 Minus
3R 32079331 3R 5553931..5554068 208..71 690 100 Minus
3R 32079331 3R 5552962..5553049 697..610 440 100 Minus
3R 32079331 3R 5554129..5554184 71..16 280 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:20:22 has no hits.

BS13088.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:06 Download gff for BS13088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2152-PA 1..681 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:02 Download gff for BS13088.5prime
Subject Subject Range Query Range Percent Splice Strand
Pcmt-RA 129..818 8..701 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:34 Download gff for BS13088.5prime
Subject Subject Range Query Range Percent Splice Strand
Pcmt-RA 129..818 8..701 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:34 Download gff for BS13088.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5552958..5553045 614..701 97 <- Minus
3R 5553271..5553675 209..613 100 <- Minus
3R 5553931..5554067 72..208 100 <- Minus
3R 5554129..5554188 8..71 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:02 Download gff for BS13088.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1378680..1378767 614..701 97 <- Minus
arm_3R 1378993..1379397 209..613 100 <- Minus
arm_3R 1379653..1379789 72..208 100 <- Minus
arm_3R 1379851..1379910 8..71 93   Minus

BS13088.complete Sequence

713 bp assembled on 2006-11-01

GenBank Submission: FJ637382

> BS13088.complete
GAAGTTATCAGTCGACATGGCGTGGCGATCCGTGGGAGCCAATAATGAAG
ACCTGATTCGCCAACTGAAGGATCACGGCGTCATTGCAAGTGATGCGGTG
GCCCAGGCGATGAAGGAAACCGACCGCAAGCACTACTCTCCGCGCAACCC
CTACATGGACGCCCCGCAACCCATTGGAGGAGGTGTCACCATCAGTGCTC
CTCACATGCATGCCTTCGCCTTGGAGTATCTACGCGACCACTTGAAGCCC
GGTGCACGTATACTGGATGTGGGCTCTGGATCTGGCTACCTCACAGCCTG
CTTCTATCGTTACATCAAGGCTAAGGGCGTTGATGCGGACACCCGAATCG
TGGGCATAGAGCACCAGGCAGAGCTGGTGCGGCGGAGCAAGGCCAACTTA
AACACCGACGACCGTAGCATGCTGGACTCCGGCCAGTTGCTGATCGTCGA
GGGTGACGGCCGCAAGGGATACCCCCCGAACGCCCCGTATAATGCAATCC
ATGTAGGAGCAGCTGCTCCCGACACACCCACCGAACTCATCAACCAACTG
GCCAGCGGCGGACGCCTGATAGTTCCAGTCGGTCCCGACGGCGGGTCTCA
GTACATGCAACAGTACGACAAGGACGCCAATGGGAAGGTGGAGATGACAC
GTCTCATGGGCGTAATGTACGTCCCTCTCACGGATCTTCGCTCCTGAAAG
CTTTCTAGACCAT

BS13088.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
Pcmt-RA 681 CG2152-PA 1..681 17..697 3405 100 Plus
Pcmt-RC 612 CG2152-PC 1..597 17..613 2985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
Pcmt-RA 953 CG2152-RA 133..814 16..697 3410 100 Plus
Pcmt-RC 998 CG2152-RC 133..730 16..613 2990 100 Plus
Pcmt-RC 998 CG2152-RC 776..859 614..697 420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5553271..5553676 613..208 2030 100 Minus
3R 32079331 3R 5553931..5554068 208..71 690 100 Minus
3R 32079331 3R 5552962..5553049 697..610 440 100 Minus
3R 32079331 3R 5554129..5554184 71..16 280 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:29:30 has no hits.

BS13088.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:22 Download gff for BS13088.complete
Subject Subject Range Query Range Percent Splice Strand
Pcmt-RA 1..681 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:19 Download gff for BS13088.complete
Subject Subject Range Query Range Percent Splice Strand
Pcmt-RA 124..813 8..701 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:19 Download gff for BS13088.complete
Subject Subject Range Query Range Percent Splice Strand
Pcmt-RA 134..813 17..696 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:23 Download gff for BS13088.complete
Subject Subject Range Query Range Percent Splice Strand
Pcmt-RA 124..813 8..701 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:24 Download gff for BS13088.complete
Subject Subject Range Query Range Percent Splice Strand
Pcmt-RA 134..813 17..696 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:24 Download gff for BS13088.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5552963..5553045 614..696 100 <- Minus
3R 5553271..5553675 209..613 100 <- Minus
3R 5553931..5554067 72..208 100 <- Minus
3R 5554129..5554183 17..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:19 Download gff for BS13088.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1378685..1378767 614..696 100 <- Minus
arm_3R 1378993..1379397 209..613 100 <- Minus
arm_3R 1379653..1379789 72..208 100 <- Minus
arm_3R 1379851..1379905 17..71 100   Minus

BS13088.pep Sequence

Translation from 16 to 696

> BS13088.pep
MAWRSVGANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAP
QPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYI
KAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK
GYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQY
DKDANGKVEMTRLMGVMYVPLTDLRS*

BS13088.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
Pcmt-PA 226 CG2152-PA 1..226 1..226 1183 100 Plus
Pcmt-PC 203 CG2152-PC 1..199 1..199 1044 100 Plus