Clone Sequence Records
BS13091.3prime Sequence
706 bp (700 high quality bases) assembled on 2006-10-13
> BS13091.3prime
ATGGTCTAGAAAGCTTTCATGTTGCGTACCTTTTTGTCCAGAGACGCGCA
ATTCGATCGTGCTCCTCACGATTCTGCAAATATTGCGTGGCAATGCTGCC
CACCAGCGGATCGGCTGGATTACAGTCTGTGAGCAGGGAGCAAATTGACA
GCAAGACCTTTGATATGGTCAGCGCCGGCGACCAGTTGTCCTTGAGTATG
TCCAGGCAAATGACGCCCTGGCTGTTGATGTTGCAGTGATAGATGCGCGT
GCGGAACGTGACTTTGGGTGGCTTGAAGGGATACTCCGGCGAGAAGTGTA
TGTCGAGGAAGAAGACGCCGCCCTCGTAGACGGATCCGGGTGGTCCCAGT
ATGGTGGATACCCACTCGTACAGGTTGTCGCCCTTGGGCCCGGCACTGCA
GTTGGGCGGTGGATCCAGTGTGATCTCAGCCAGCTCCTTCTGTATGCGCT
TGGCCGAGGTGCCCAGCGCCCTGGATATCCTGGGCGTTGTTTTGGCTTCC
TTTCGCGGCTCATCTCCGCCACCGGCATTGCTCCCGGAGGCACCACCGTT
GGCGTTGCTGCCCCTGCCGCCACGTGCCTGCGGAGTTCCGGCAGTCGTCG
GCTGGCTGGTATTGCTCACGTTGCTGGCCGTTGTGCTGGGTGCACTGGGC
GCATTTGAGGTGGCACTGGAGGTGGCCACCTCGGCGGCACTGCCCGCTGC
TGGGGT
BS13091.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6720-PA | 699 | UbcD2-RA | 10..699 | 706..17 | 3425 | 99.8 | Minus |
CG6720-PB | 699 | UbcD2-RB | 10..699 | 706..17 | 3425 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc2-RD | 1625 | CG6720-RD | 381..1070 | 706..17 | 3435 | 99.9 | Minus |
Ubc2-RC | 2111 | CG6720-RC | 314..1003 | 706..17 | 3435 | 99.9 | Minus |
Ubc2-RB | 1349 | CG6720-RB | 105..794 | 706..17 | 3435 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10766391..10766982 | 115..706 | 2945 | 99.8 | Plus |
2L | 23513712 | 2L | 1334347..1334718 | 442..71 | 495 | 75.5 | Minus |
2L | 23513712 | 2L | 10766189..10766278 | 28..117 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:20:34 has no hits.
BS13091.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:07 Download gff for
BS13091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6720-PB | 10..699 | 17..706 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:03 Download gff for
BS13091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD2-RA | 314..1006 | 13..706 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:36 Download gff for
BS13091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc2-RB | 105..797 | 13..706 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:36 Download gff for
BS13091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10766191..10766275 | 30..114 | 100 | <- | Plus |
2L | 10766391..10766982 | 115..706 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:03 Download gff for
BS13091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10766191..10766275 | 30..114 | 100 | <- | Plus |
arm_2L | 10766391..10766982 | 115..706 | 99 | | Plus |
BS13091.5prime Sequence
728 bp (700 high quality bases) assembled on 2006-10-13
> BS13091.5prime
GAAGTTATCAGTCGACATGTCTTCAACCCCAGCAGCGGGCAGTGCCGCCG
AGGTGGCCACCTCCAGTGCCACCTCAAATGCGCCCAGTGCACCCAGCACA
ACGGCCAGCAACGTGAGCAATACCAGCCAGCCGACGACTGCCGGAACTCC
GCAGGCACGTGGCGGCAGGGGCAGCAACGCCAACGGTGGTGCCTCCGGGA
GCAATGCCGGTGGCGGAGATGAGCCGCGAAAGGAAGCCAAAACAACGCCC
AGGATATCCAGGGCGCTGGGCACCTCGGCCAAGCGCATACAGAAGGAGCT
GGCTGAGATCACACTGGATCCACCGCCCAACTGCAGTGCCGGGCCCAAGG
GCGACAACCTGTACGAGTGGGTATCCACCATACTGGGACCACCCGGATCC
GTCTACGAGGGCGGCGTCTTCTTCCTCGACATACACTTCTCGCCGGAGTA
TCCCTTCAAGCCACCCAAAGTCACGTTCCGCACGCGCATCTATCACTGCA
ACATCAACAGCCAGGGCGTCATTTGCCTGGACATACTCAAGGACAACTGG
TCGCCGGCGCTGACCATATCAAAGGTCTTGCTGTCAATTTGCTCCCTGCT
CACAGACTGTAATCCAGCCGATCCGCTGGTGGGCAGCATTGCCACGCAAT
ATTTGCAGAATCGTGAGGAGCACGATCGAATTGCGCGTCTCTGGACAAAA
GGTACGCAACATGAAAGCTTTCTAAACC
BS13091.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6720-PA | 699 | UbcD2-RA | 1..684 | 17..700 | 3395 | 99.8 | Plus |
CG6720-PB | 699 | UbcD2-RB | 1..684 | 17..700 | 3395 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc2-RD | 1625 | CG6720-RD | 372..1070 | 17..714 | 3455 | 99.7 | Plus |
Ubc2-RC | 2111 | CG6720-RC | 305..1003 | 17..714 | 3455 | 99.7 | Plus |
Ubc2-RB | 1349 | CG6720-RB | 96..794 | 17..714 | 3455 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:34:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10766391..10766991 | 617..17 | 2990 | 99.8 | Minus |
2L | 23513712 | 2L | 1334347..1334718 | 290..661 | 495 | 75.5 | Plus |
2L | 23513712 | 2L | 10766193..10766278 | 700..615 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:34:07 has no hits.
BS13091.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:07 Download gff for
BS13091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6720-PB | 1..699 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:26:49 Download gff for
BS13091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD2-RA | 305..1006 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:09 Download gff for
BS13091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc2-RB | 96..797 | 17..718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:09 Download gff for
BS13091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10766191..10766275 | 618..701 | 98 | <- | Minus |
2L | 10766391..10766991 | 17..617 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:26:49 Download gff for
BS13091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10766191..10766275 | 618..701 | 98 | <- | Minus |
arm_2L | 10766391..10766991 | 17..617 | 99 | | Minus |
BS13091.complete Sequence
731 bp assembled on 2006-11-01
GenBank Submission: FJ637383
> BS13091.complete
GAAGTTATCAGTCGACATGTCTTCAACCCCAGCAGCGGGCAGTGCCGCCG
AGGTGGCCACCTCCAGTGCCACCTCAAATGCGCCCAGTGCACCCAGCACA
ACGGCCAGCAACGTGAGCAATACCAGCCAGCCGACGACTGCCGGAACTCC
GCAGGCACGTGGCGGCAGGGGCAGCAACGCCAACGGTGGTGCCTCCGGGA
GCAATGCCGGTGGCGGAGATGAGCCGCGAAAGGAAGCCAAAACAACGCCC
AGGATATCCAGGGCGCTGGGCACCTCGGCCAAGCGCATACAGAAGGAGCT
GGCTGAGATCACACTGGATCCACCGCCCAACTGCAGTGCCGGGCCCAAGG
GCGACAACCTGTACGAGTGGGTATCCACCATACTGGGACCACCCGGATCC
GTCTACGAGGGCGGCGTCTTCTTCCTCGACATACACTTCTCGCCGGAGTA
TCCCTTCAAGCCACCCAAAGTCACGTTCCGCACGCGCATCTATCACTGCA
ACATCAACAGCCAGGGCGTCATTTGCCTGGACATACTCAAGGACAACTGG
TCGCCGGCGCTGACCATATCAAAGGTCTTGCTGTCAATTTGCTCCCTGCT
CACAGACTGTAATCCAGCCGATCCGCTGGTGGGCAGCATTGCCACGCAAT
ATTTGCAGAATCGTGAGGAGCACGATCGAATTGCGCGTCTCTGGACAAAA
AGGTACGCAACATGAAAGCTTTCTAGACCAT
BS13091.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc2-RD | 699 | CG6720-PD | 1..699 | 17..715 | 3480 | 99.9 | Plus |
Ubc2-RC | 699 | CG6720-PC | 1..699 | 17..715 | 3480 | 99.9 | Plus |
Ubc2-RB | 699 | CG6720-PB | 1..699 | 17..715 | 3480 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc2-RD | 1625 | CG6720-RD | 372..1070 | 17..715 | 3480 | 99.9 | Plus |
Ubc2-RC | 2111 | CG6720-RC | 305..1003 | 17..715 | 3480 | 99.9 | Plus |
Ubc2-RB | 1349 | CG6720-RB | 96..794 | 17..715 | 3480 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10766391..10766991 | 617..17 | 2990 | 99.8 | Minus |
2L | 23513712 | 2L | 1334347..1334718 | 290..661 | 495 | 75.5 | Plus |
2L | 23513712 | 2L | 10766189..10766278 | 704..615 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:04:47 has no hits.
BS13091.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:06 Download gff for
BS13091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD2-RB | 1..699 | 17..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:30 Download gff for
BS13091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD2-RB | 96..797 | 17..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:58 Download gff for
BS13091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD2-RA | 305..1002 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:06 Download gff for
BS13091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD2-RB | 96..797 | 17..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:31 Download gff for
BS13091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc2-RB | 96..793 | 17..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:31 Download gff for
BS13091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10766189..10766275 | 618..704 | 100 | <- | Minus |
2L | 10766391..10766991 | 17..617 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:58 Download gff for
BS13091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10766189..10766275 | 618..704 | 100 | <- | Minus |
arm_2L | 10766391..10766991 | 17..617 | 99 | | Minus |
BS13091.pep Sequence
Translation from 16 to 714
> BS13091.pep
MSSTPAAGSAAEVATSSATSNAPSAPSTTASNVSNTSQPTTAGTPQARGG
RGSNANGGASGSNAGGGDEPRKEAKTTPRISRALGTSAKRIQKELAEITL
DPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPP
KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP
ADPLVGSIATQYLQNREEHDRIARLWTKRYAT*
BS13091.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc2-PD | 232 | CG6720-PD | 1..232 | 1..232 | 1218 | 100 | Plus |
Ubc2-PC | 232 | CG6720-PC | 1..232 | 1..232 | 1218 | 100 | Plus |
Ubc2-PB | 232 | CG6720-PB | 1..232 | 1..232 | 1218 | 100 | Plus |
Ubc2-PA | 232 | CG6720-PA | 1..232 | 1..232 | 1218 | 100 | Plus |
CG5440-PC | 169 | CG5440-PC | 11..166 | 77..231 | 583 | 71.8 | Plus |