Clone BS13091 Report

Search the DGRC for BS13091

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptUbc2-RA
Protein status:BS13091.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13091.3prime Sequence

706 bp (700 high quality bases) assembled on 2006-10-13

> BS13091.3prime
ATGGTCTAGAAAGCTTTCATGTTGCGTACCTTTTTGTCCAGAGACGCGCA
ATTCGATCGTGCTCCTCACGATTCTGCAAATATTGCGTGGCAATGCTGCC
CACCAGCGGATCGGCTGGATTACAGTCTGTGAGCAGGGAGCAAATTGACA
GCAAGACCTTTGATATGGTCAGCGCCGGCGACCAGTTGTCCTTGAGTATG
TCCAGGCAAATGACGCCCTGGCTGTTGATGTTGCAGTGATAGATGCGCGT
GCGGAACGTGACTTTGGGTGGCTTGAAGGGATACTCCGGCGAGAAGTGTA
TGTCGAGGAAGAAGACGCCGCCCTCGTAGACGGATCCGGGTGGTCCCAGT
ATGGTGGATACCCACTCGTACAGGTTGTCGCCCTTGGGCCCGGCACTGCA
GTTGGGCGGTGGATCCAGTGTGATCTCAGCCAGCTCCTTCTGTATGCGCT
TGGCCGAGGTGCCCAGCGCCCTGGATATCCTGGGCGTTGTTTTGGCTTCC
TTTCGCGGCTCATCTCCGCCACCGGCATTGCTCCCGGAGGCACCACCGTT
GGCGTTGCTGCCCCTGCCGCCACGTGCCTGCGGAGTTCCGGCAGTCGTCG
GCTGGCTGGTATTGCTCACGTTGCTGGCCGTTGTGCTGGGTGCACTGGGC
GCATTTGAGGTGGCACTGGAGGTGGCCACCTCGGCGGCACTGCCCGCTGC
TGGGGT

BS13091.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6720-PA 699 UbcD2-RA 10..699 706..17 3425 99.8 Minus
CG6720-PB 699 UbcD2-RB 10..699 706..17 3425 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc2-RD 1625 CG6720-RD 381..1070 706..17 3435 99.9 Minus
Ubc2-RC 2111 CG6720-RC 314..1003 706..17 3435 99.9 Minus
Ubc2-RB 1349 CG6720-RB 105..794 706..17 3435 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10766391..10766982 115..706 2945 99.8 Plus
2L 23513712 2L 1334347..1334718 442..71 495 75.5 Minus
2L 23513712 2L 10766189..10766278 28..117 450 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:20:34 has no hits.

BS13091.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:07 Download gff for BS13091.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6720-PB 10..699 17..706 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:03 Download gff for BS13091.3prime
Subject Subject Range Query Range Percent Splice Strand
UbcD2-RA 314..1006 13..706 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:36 Download gff for BS13091.3prime
Subject Subject Range Query Range Percent Splice Strand
Ubc2-RB 105..797 13..706 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:36 Download gff for BS13091.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10766191..10766275 30..114 100 <- Plus
2L 10766391..10766982 115..706 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:03 Download gff for BS13091.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10766191..10766275 30..114 100 <- Plus
arm_2L 10766391..10766982 115..706 99   Plus

BS13091.5prime Sequence

728 bp (700 high quality bases) assembled on 2006-10-13

> BS13091.5prime
GAAGTTATCAGTCGACATGTCTTCAACCCCAGCAGCGGGCAGTGCCGCCG
AGGTGGCCACCTCCAGTGCCACCTCAAATGCGCCCAGTGCACCCAGCACA
ACGGCCAGCAACGTGAGCAATACCAGCCAGCCGACGACTGCCGGAACTCC
GCAGGCACGTGGCGGCAGGGGCAGCAACGCCAACGGTGGTGCCTCCGGGA
GCAATGCCGGTGGCGGAGATGAGCCGCGAAAGGAAGCCAAAACAACGCCC
AGGATATCCAGGGCGCTGGGCACCTCGGCCAAGCGCATACAGAAGGAGCT
GGCTGAGATCACACTGGATCCACCGCCCAACTGCAGTGCCGGGCCCAAGG
GCGACAACCTGTACGAGTGGGTATCCACCATACTGGGACCACCCGGATCC
GTCTACGAGGGCGGCGTCTTCTTCCTCGACATACACTTCTCGCCGGAGTA
TCCCTTCAAGCCACCCAAAGTCACGTTCCGCACGCGCATCTATCACTGCA
ACATCAACAGCCAGGGCGTCATTTGCCTGGACATACTCAAGGACAACTGG
TCGCCGGCGCTGACCATATCAAAGGTCTTGCTGTCAATTTGCTCCCTGCT
CACAGACTGTAATCCAGCCGATCCGCTGGTGGGCAGCATTGCCACGCAAT
ATTTGCAGAATCGTGAGGAGCACGATCGAATTGCGCGTCTCTGGACAAAA
GGTACGCAACATGAAAGCTTTCTAAACC

BS13091.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6720-PA 699 UbcD2-RA 1..684 17..700 3395 99.8 Plus
CG6720-PB 699 UbcD2-RB 1..684 17..700 3395 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc2-RD 1625 CG6720-RD 372..1070 17..714 3455 99.7 Plus
Ubc2-RC 2111 CG6720-RC 305..1003 17..714 3455 99.7 Plus
Ubc2-RB 1349 CG6720-RB 96..794 17..714 3455 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10766391..10766991 617..17 2990 99.8 Minus
2L 23513712 2L 1334347..1334718 290..661 495 75.5 Plus
2L 23513712 2L 10766193..10766278 700..615 430 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:34:07 has no hits.

BS13091.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:07 Download gff for BS13091.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6720-PB 1..699 17..714 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:26:49 Download gff for BS13091.5prime
Subject Subject Range Query Range Percent Splice Strand
UbcD2-RA 305..1006 17..718 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:09 Download gff for BS13091.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubc2-RB 96..797 17..718 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:09 Download gff for BS13091.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10766191..10766275 618..701 98 <- Minus
2L 10766391..10766991 17..617 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:26:49 Download gff for BS13091.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10766191..10766275 618..701 98 <- Minus
arm_2L 10766391..10766991 17..617 99   Minus

BS13091.complete Sequence

731 bp assembled on 2006-11-01

GenBank Submission: FJ637383

> BS13091.complete
GAAGTTATCAGTCGACATGTCTTCAACCCCAGCAGCGGGCAGTGCCGCCG
AGGTGGCCACCTCCAGTGCCACCTCAAATGCGCCCAGTGCACCCAGCACA
ACGGCCAGCAACGTGAGCAATACCAGCCAGCCGACGACTGCCGGAACTCC
GCAGGCACGTGGCGGCAGGGGCAGCAACGCCAACGGTGGTGCCTCCGGGA
GCAATGCCGGTGGCGGAGATGAGCCGCGAAAGGAAGCCAAAACAACGCCC
AGGATATCCAGGGCGCTGGGCACCTCGGCCAAGCGCATACAGAAGGAGCT
GGCTGAGATCACACTGGATCCACCGCCCAACTGCAGTGCCGGGCCCAAGG
GCGACAACCTGTACGAGTGGGTATCCACCATACTGGGACCACCCGGATCC
GTCTACGAGGGCGGCGTCTTCTTCCTCGACATACACTTCTCGCCGGAGTA
TCCCTTCAAGCCACCCAAAGTCACGTTCCGCACGCGCATCTATCACTGCA
ACATCAACAGCCAGGGCGTCATTTGCCTGGACATACTCAAGGACAACTGG
TCGCCGGCGCTGACCATATCAAAGGTCTTGCTGTCAATTTGCTCCCTGCT
CACAGACTGTAATCCAGCCGATCCGCTGGTGGGCAGCATTGCCACGCAAT
ATTTGCAGAATCGTGAGGAGCACGATCGAATTGCGCGTCTCTGGACAAAA
AGGTACGCAACATGAAAGCTTTCTAGACCAT

BS13091.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc2-RD 699 CG6720-PD 1..699 17..715 3480 99.9 Plus
Ubc2-RC 699 CG6720-PC 1..699 17..715 3480 99.9 Plus
Ubc2-RB 699 CG6720-PB 1..699 17..715 3480 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc2-RD 1625 CG6720-RD 372..1070 17..715 3480 99.9 Plus
Ubc2-RC 2111 CG6720-RC 305..1003 17..715 3480 99.9 Plus
Ubc2-RB 1349 CG6720-RB 96..794 17..715 3480 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10766391..10766991 617..17 2990 99.8 Minus
2L 23513712 2L 1334347..1334718 290..661 495 75.5 Plus
2L 23513712 2L 10766189..10766278 704..615 450 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:04:47 has no hits.

BS13091.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:06 Download gff for BS13091.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD2-RB 1..699 17..715 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:30 Download gff for BS13091.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD2-RB 96..797 17..719 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:58 Download gff for BS13091.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD2-RA 305..1002 17..714 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:06 Download gff for BS13091.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD2-RB 96..797 17..719 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:31 Download gff for BS13091.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc2-RB 96..793 17..714 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:31 Download gff for BS13091.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10766189..10766275 618..704 100 <- Minus
2L 10766391..10766991 17..617 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:58 Download gff for BS13091.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10766189..10766275 618..704 100 <- Minus
arm_2L 10766391..10766991 17..617 99   Minus

BS13091.pep Sequence

Translation from 16 to 714

> BS13091.pep
MSSTPAAGSAAEVATSSATSNAPSAPSTTASNVSNTSQPTTAGTPQARGG
RGSNANGGASGSNAGGGDEPRKEAKTTPRISRALGTSAKRIQKELAEITL
DPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPP
KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP
ADPLVGSIATQYLQNREEHDRIARLWTKRYAT*

BS13091.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc2-PD 232 CG6720-PD 1..232 1..232 1218 100 Plus
Ubc2-PC 232 CG6720-PC 1..232 1..232 1218 100 Plus
Ubc2-PB 232 CG6720-PB 1..232 1..232 1218 100 Plus
Ubc2-PA 232 CG6720-PA 1..232 1..232 1218 100 Plus
CG5440-PC 169 CG5440-PC 11..166 77..231 583 71.8 Plus