Clone BS13094 Report

Search the DGRC for BS13094

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG14687-RA
Protein status:BS13094.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13094.5prime Sequence

447 bp (447 high quality bases) assembled on 2006-10-13

> BS13094.5prime
GAAGTTATCAGTCGACATGTACATTTACCCCAGCTCACCGGAATCAGCAT
CGTCCTTGCAGTCCGAAGAGAGTGCGGCCATTAAGATTCAGGCCGGATTT
CGTGGCTACCGTGTGCGCAAAGAGATCCATCGATCCAGCAAGAATCCCCA
TCCCAGGCGGAATCAGCGACAGCGTCCAAAGAACAACGGCCTCATGGAAA
ACCAGAACAATACGGGAAATCCCCGTCCCAGCGGCGAGGATCAGCATACG
GCCACCGAGAATGGTGGTAAATCCGTGGAGGATCGTAGTGCCACCAAGAT
ACAGGCGGGATTCCGGGGATTCCTGGTGCGAAAGAAGCAGAAAATCGCCA
CCGATGCCGCTGTTAAAATTCAGGCTGGCTTCCGGGGATTCAAAACACGC
AAAGAATTGAAACAATGCGAGCCCATTGTGTAAAAGCTTTCTAGACC

BS13094.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG14687-PA 417 CG14687-RA 1..417 17..433 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14687-RA 740 CG14687-RA 129..546 16..433 2090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10793032..10793449 16..433 2090 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:15:44 has no hits.

BS13094.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:10 Download gff for BS13094.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14687-PA 1..417 17..433 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:58 Download gff for BS13094.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14687-RA 121..553 9..440 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:33:36 Download gff for BS13094.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14687-RA 121..553 9..440 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:33:36 Download gff for BS13094.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10793024..10793456 9..440 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:58 Download gff for BS13094.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6618746..6619178 9..440 98   Plus

BS13094.3prime Sequence

447 bp (447 high quality bases) assembled on 2006-10-13

> BS13094.3prime
ATGGTCTAGAAAGCTTTTACACAATGGGCTCGCATTGTTTCAATTCTTTG
CGTGTTTTGAATCCCCGGAAGCCAGCCTGAATTTTAACAGCGGCATCGGT
GGCGATTTTCTGCTTCTTTCGCACCAGGAATCCCCGGAATCCCGCCTGTA
TCTTGGTGGCACTACGATCCTCCACGGATTTACCACCATTCTCGGTGGCC
GTATGCTGATCCTCGCCGCTGGGACGGGGATTTCCCGTATTGTTCTGGTT
TTCCATGAGGCCGTTGTTCTTTGGACGCTGTCGCTGATTCCGCCTGGGAT
GGGGATTCTTGCTGGATCGATGGATCTCTTTGCGCACACGGTAGCCACGA
AATCCGGCCTGAATCTTAATGGCCGCACTCTCTTCGGACTGCAAGGACGA
TGCTGATTCCGGTGAGCTGGGGTAAATGTACATGTCGACTGATAACT

BS13094.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14687-PA 417 CG14687-RA 1..417 433..17 2085 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14687-RA 740 CG14687-RA 129..546 434..17 2090 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10793032..10793449 434..17 2090 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:40:02 has no hits.

BS13094.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:09 Download gff for BS13094.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14687-PA 1..417 17..433 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:44:01 Download gff for BS13094.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14687-RA 121..553 10..441 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:12 Download gff for BS13094.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14687-RA 121..553 10..441 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:12 Download gff for BS13094.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10793024..10793456 10..441 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:44:01 Download gff for BS13094.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6618746..6619178 10..441 98   Minus

BS13094.complete Sequence

449 bp assembled on 2006-11-01

GenBank Submission: FJ637384

> BS13094.complete
GAAGTTATCAGTCGACATGTACATTTACCCCAGCTCACCGGAATCAGCAT
CGTCCTTGCAGTCCGAAGAGAGTGCGGCCATTAAGATTCAGGCCGGATTT
CGTGGCTACCGTGTGCGCAAAGAGATCCATCGATCCAGCAAGAATCCCCA
TCCCAGGCGGAATCAGCGACAGCGTCCAAAGAACAACGGCCTCATGGAAA
ACCAGAACAATACGGGAAATCCCCGTCCCAGCGGCGAGGATCAGCATACG
GCCACCGAGAATGGTGGTAAATCCGTGGAGGATCGTAGTGCCACCAAGAT
ACAGGCGGGATTCCGGGGATTCCTGGTGCGAAAGAAGCAGAAAATCGCCA
CCGATGCCGCTGTTAAAATTCAGGCTGGCTTCCGGGGATTCAAAACACGC
AAAGAATTGAAACAATGCGAGCCCATTGTGTAAAAGCTTTCTAGACCAT

BS13094.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14687-RA 417 CG14687-PA 1..417 17..433 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14687-RA 740 CG14687-RA 129..546 16..433 2090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10793032..10793449 16..433 2090 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:39:14 has no hits.

BS13094.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:10 Download gff for BS13094.complete
Subject Subject Range Query Range Percent Splice Strand
CG14687-RA 1..417 17..433 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:02 Download gff for BS13094.complete
Subject Subject Range Query Range Percent Splice Strand
CG14687-RA 119..551 9..440 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:50 Download gff for BS13094.complete
Subject Subject Range Query Range Percent Splice Strand
CG14687-RA 130..544 17..431 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:11 Download gff for BS13094.complete
Subject Subject Range Query Range Percent Splice Strand
CG14687-RA 119..551 9..440 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:01 Download gff for BS13094.complete
Subject Subject Range Query Range Percent Splice Strand
CG14687-RA 130..544 17..431 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:01 Download gff for BS13094.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10793033..10793447 17..431 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:50 Download gff for BS13094.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6618755..6619169 17..431 100   Plus

BS13094.pep Sequence

Translation from 16 to 432

> BS13094.pep
MYIYPSSPESASSLQSEESAAIKIQAGFRGYRVRKEIHRSSKNPHPRRNQ
RQRPKNNGLMENQNNTGNPRPSGEDQHTATENGGKSVEDRSATKIQAGFR
GFLVRKKQKIATDAAVKIQAGFRGFKTRKELKQCEPIV*

BS13094.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14687-PA 138 CG14687-PA 1..138 1..138 713 100 Plus