Clone Sequence Records
BS13105.5prime Sequence
372 bp (372 high quality bases) assembled on 2006-10-13
> BS13105.5prime
GAAGTTATCAGTCGACATGGTTAAGCTCGGCTTTCTTTCACTGTTAATTG
CTGCCTGTGTGGTTGCTGCCTTTGCTGCGGGTGATTGTCCTTCATCCACC
AAGGTTCAGAACTGTACGCCAAAATGCCTGCATGACAGCGAGTGCAGCGC
CATCGGCGGAAAATGCTGTCCGAATTTGTGCAACGGTCGCAGTTGTGCTC
AACCGAATGTCCTGGGAAATTCTGGAGCCGATAAATCGCCCTTCGGCAGC
AAGAACTCTGGAGCTACTGGCAGTTATTGCGGCAATGTCAAGTGCGGCAG
CTTTGAGAAATGCGAAATGGATCGCAGCACCAAGCGACCCAAGTGCGTGA
GATCGTGAAAGCTTTCTAGACC
BS13105.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30197-PA | 342 | CG30197-RA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30197-RA | 481 | CG30197-RA | 51..395 | 16..360 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14514282..14514456 | 83..257 | 875 | 100 | Plus |
2R | 25286936 | 2R | 14514804..14514906 | 258..360 | 515 | 100 | Plus |
2R | 25286936 | 2R | 14514152..14514215 | 20..83 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:34:52 has no hits.
BS13105.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:15 Download gff for
BS13105.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-PA | 1..342 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:26:53 Download gff for
BS13105.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-RA | 41..391 | 6..360 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:12 Download gff for
BS13105.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-RA | 45..395 | 6..360 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:12 Download gff for
BS13105.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14514150..14514215 | 16..83 | 97 | -> | Plus |
2R | 14514283..14514456 | 84..257 | 100 | -> | Plus |
2R | 14514804..14514906 | 258..360 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:26:53 Download gff for
BS13105.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10401655..10401720 | 16..83 | 97 | -> | Plus |
arm_2R | 10401788..10401961 | 84..257 | 100 | -> | Plus |
arm_2R | 10402309..10402411 | 258..360 | 100 | | Plus |
BS13105.3prime Sequence
372 bp (372 high quality bases) assembled on 2006-10-13
> BS13105.3prime
ATGGTCTAGAAAGCTTTCACGATCTCACGCACTTGGGTCGCTTGGTGCTG
CGATCCATTTCGCATTTCTCAAAGCTGCCGCACTTGACATTGCCGCAATA
ACTGCCAGTAGCTCCAGAGTTCTTGCTGCCGAAGGGCGATTTATCGGCTC
CAGAATTTCCCAGGACATTCGGTTGAGCACAACTGCGACCGTTGCACAAA
TTCGGACAGCATTTTCCGCCGATGGCGCTGCACTCGCTGTCATGCAGGCA
TTTTGGCGTACAGTTCTGAACCTTGGTGGATGAAGGACAATCACCCGCAG
CAAAGGCAGCAACCACACAGGCAGCAATTAACAGTGAAAGAAAGCCGAGC
TTAACCATGTCGACTGATAACT
BS13105.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30197-PA | 342 | CG30197-RA | 1..342 | 358..17 | 1710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:06:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30197-RA | 481 | CG30197-RA | 51..395 | 359..15 | 1725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14514282..14514456 | 292..118 | 875 | 100 | Minus |
2R | 25286936 | 2R | 14514804..14514906 | 117..15 | 515 | 100 | Minus |
2R | 25286936 | 2R | 14514152..14514215 | 355..292 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:06:19 has no hits.
BS13105.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:15 Download gff for
BS13105.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-PA | 1..342 | 17..358 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:49 Download gff for
BS13105.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-RA | 41..391 | 15..369 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:08 Download gff for
BS13105.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-RA | 45..395 | 15..369 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:08 Download gff for
BS13105.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14514150..14514215 | 292..359 | 97 | -> | Minus |
2R | 14514283..14514456 | 118..291 | 100 | -> | Minus |
2R | 14514804..14514906 | 15..117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:49 Download gff for
BS13105.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10401655..10401720 | 292..359 | 97 | -> | Minus |
arm_2R | 10401788..10401961 | 118..291 | 100 | -> | Minus |
arm_2R | 10402309..10402411 | 15..117 | 100 | | Minus |
BS13105.complete Sequence
374 bp assembled on 2006-11-01
GenBank Submission: FJ637385
> BS13105.complete
GAAGTTATCAGTCGACATGGTTAAGCTCGGCTTTCTTTCACTGTTAATTG
CTGCCTGTGTGGTTGCTGCCTTTGCTGCGGGTGATTGTCCTTCATCCACC
AAGGTTCAGAACTGTACGCCAAAATGCCTGCATGACAGCGAGTGCAGCGC
CATCGGCGGAAAATGCTGTCCGAATTTGTGCAACGGTCGCAGTTGTGCTC
AACCGAATGTCCTGGGAAATTCTGGAGCCGATAAATCGCCCTTCGGCAGC
AAGAACTCTGGAGCTACTGGCAGTTATTGCGGCAATGTCAAGTGCGGCAG
CTTTGAGAAATGCGAAATGGATCGCAGCACCAAGCGACCCAAGTGCGTGA
GATCGTGAAAGCTTTCTAGACCAT
BS13105.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30197-RA | 342 | CG30197-PA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:44:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30197-RA | 481 | CG30197-RA | 51..395 | 16..360 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:44:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14514282..14514456 | 83..257 | 875 | 100 | Plus |
2R | 25286936 | 2R | 14514804..14514906 | 258..360 | 515 | 100 | Plus |
2R | 25286936 | 2R | 14514152..14514215 | 20..83 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:44:29 has no hits.
BS13105.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:07 Download gff for
BS13105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-RA | 1..342 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:59 Download gff for
BS13105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-RA | 41..391 | 6..360 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:45 Download gff for
BS13105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-RA | 48..388 | 17..357 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:07 Download gff for
BS13105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-RA | 41..391 | 6..360 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:27 Download gff for
BS13105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-RA | 52..392 | 17..357 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:27 Download gff for
BS13105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14514151..14514215 | 17..83 | 97 | -> | Plus |
2R | 14514283..14514456 | 84..257 | 100 | -> | Plus |
2R | 14514804..14514903 | 258..357 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:45 Download gff for
BS13105.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10401656..10401720 | 17..83 | 97 | -> | Plus |
arm_2R | 10401788..10401961 | 84..257 | 100 | -> | Plus |
arm_2R | 10402309..10402408 | 258..357 | 100 | | Plus |
BS13105.pep Sequence
Translation from 16 to 357
> BS13105.pep
MVKLGFLSLLIAACVVAAFAAGDCPSSTKVQNCTPKCLHDSECSAIGGKC
CPNLCNGRSCAQPNVLGNSGADKSPFGSKNSGATGSYCGNVKCGSFEKCE
MDRSTKRPKCVRS*
BS13105.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30197-PA | 113 | CG30197-PA | 1..113 | 1..113 | 621 | 100 | Plus |