Clone BS13114 Report

Search the DGRC for BS13114

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:131
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptTsp42Eg-RA
Protein status:BS13114.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13114.3prime Sequence

687 bp (648 high quality bases) assembled on 2006-10-13

> BS13114.3prime
ATGGTCTAGAAAGCTTCTATTTCTGATAGTACTTCGAGCGTCGCCAGCGG
TTCACGATGCTATTGGCCAGGACATAGGCCAACAGGGCGCAAATCAGCTC
CACACCCAATAGCACCAGGGAAACCAGATTAAATGTCGTCCAACGATCGG
CGATAAAGTCCAGGAACTTTTGCCGGCATCCTTCAAGATTCAGTTTGTCA
CTCTCGCCGTTGTAGCAACTATTCGGGGGCAGAATGTAGTCCGAGGGCCC
CACATTGCCGCAGCAATCCAACCATCGCTCGAGGCTGGCAATCTGACTCT
GGTTGCCAGGCTTGATTGGCACCGGCTGGTCATTCCACAGTTTATCAAAC
GTTTTGTCCACGTTAATCAGCAGCGAGGTTTGGAAAACCCACAGGAACCC
AACTGCTAGAACTTCCAGTATGACCAAGACAATCAGAATAACAACGAACA
CCTTAGATGTGGCACTGCTCTCCCGCGCTGCTCCCAGAGCCCCGAAAAGG
GCGGTCAGAACGACGACCACGCCCACCGCGATGATGACGAAGGCGGCCGT
GTTGAAGTGCTCGAATTTGTAGATGATGTGCACACCAAGGCCGATAACAA
CCAGGCCGAACAGAGCGAGGATAATATCCCAAAAGAGGGCAAAGCCCTTC
AAAACGTTTGTGGAGCAGGCCATGTCGACTGATAACT

BS13114.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12142-PA 657 Tsp42Eg-RA 1..657 673..17 3260 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Eg-RA 1188 CG12142-RA 189..845 673..17 3270 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7032571..7032745 272..98 875 100 Minus
2R 25286936 2R 7032326..7032503 449..272 875 99.4 Minus
2R 25286936 2R 7031748..7031912 613..449 825 100 Minus
2R 25286936 2R 7032808..7032890 99..17 415 100 Minus
2R 25286936 2R 7029099..7029158 673..614 300 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:31:31 has no hits.

BS13114.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:21 Download gff for BS13114.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12142-PA 1..657 17..673 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:23 Download gff for BS13114.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eg-RA 189..848 11..673 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:58 Download gff for BS13114.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eg-RA 189..848 11..673 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:58 Download gff for BS13114.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7029099..7029158 614..673 100 -> Minus
2R 7031748..7031912 449..613 100 -> Minus
2R 7032327..7032503 272..448 99 -> Minus
2R 7032572..7032745 98..271 100 -> Minus
2R 7032810..7032893 11..97 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:23 Download gff for BS13114.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2916604..2916663 614..673 100 -> Minus
arm_2R 2919253..2919417 449..613 100 -> Minus
arm_2R 2919832..2920008 272..448 99 -> Minus
arm_2R 2920077..2920250 98..271 100 -> Minus
arm_2R 2920315..2920398 11..97 96   Minus

BS13114.5prime Sequence

682 bp (681 high quality bases) assembled on 2006-10-13

> BS13114.5prime
GAAGTTATCAGTCGACATGGCCTGCTCCACAAACGTTTTGAAGGGCTTTG
CCCTCTTTTGGGATATTATCCTCGCTCTGTTCGGCCTGGTTGTTATCGGC
CTTGGTGTGCACATCATCTACAAATTCGAGCACTTCAACACGGCCGCCTT
CGTCATCATCGCGGTGGGCGTGGTCGTCGTTCTGACCGCCCTTTTCGGGG
CTCTGGGAGCAGCGCGGGAGAGCAGTGCCACATCTAAGGTGTTCGTTGTT
ATTCTGATTGTCTTGGTCATACTGGAAGTTCTAGCAGTTGGGTTCCTGTG
GGTTTTCCAAACCTCGCTGCTGATTAACGTGGACAAAACGTTTGATAAAC
TGTGGAATGACCAGCCGGTGCCAATCAAGCCTGGCAACCAGAGTCAGATT
GCCAGCCTCGAGCGATGGTTGGATTGCTGCGGCAATGTGGGGCCCTCGGA
CTACATTCTGCCCCCGAATAGTTGCTACAACGGCGAGAGTGACAAACTGA
ATCTTGAAGGATGCCGGCAAAAGTTCCTGGACTTTATCGCCGATCGTTGG
ACGACATTTAATCTGGTTTCCCTGGTGCTATTGGGTGTGGAGCTGATTTG
CGCCCTGTTGGCCTATGTCCTGGCCAATAGCATCGTGAACCGCTGGCGAC
GCTCGAAGTACTATCAGAAATAGAAGCTTTCT

BS13114.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12142-PA 657 Tsp42Eg-RA 1..657 17..673 3260 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Eg-RA 1188 CG12142-RA 189..845 17..673 3270 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7032326..7032503 241..418 875 99.4 Plus
2R 25286936 2R 7032571..7032745 418..592 875 100 Plus
2R 25286936 2R 7031748..7031912 77..241 825 100 Plus
2R 25286936 2R 7032808..7032890 591..673 415 100 Plus
2R 25286936 2R 7029099..7029158 17..76 300 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:49:34 has no hits.

BS13114.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:22 Download gff for BS13114.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12142-PA 1..657 17..673 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:05 Download gff for BS13114.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eg-RA 189..848 17..679 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:51 Download gff for BS13114.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eg-RA 189..848 17..679 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:51 Download gff for BS13114.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7032572..7032745 419..592 100 -> Plus
2R 7032810..7032893 593..679 96   Plus
2R 7029099..7029158 17..76 100 -> Plus
2R 7031748..7031912 77..241 100 -> Plus
2R 7032327..7032503 242..418 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:05 Download gff for BS13114.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2916604..2916663 17..76 100 -> Plus
arm_2R 2919253..2919417 77..241 100 -> Plus
arm_2R 2919832..2920008 242..418 99 -> Plus
arm_2R 2920077..2920250 419..592 100 -> Plus
arm_2R 2920315..2920398 593..679 96   Plus

BS13114.complete Sequence

689 bp assembled on 2006-11-01

GenBank Submission: FJ637386

> BS13114.complete
GAAGTTATCAGTCGACATGGCCTGCTCCACAAACGTTTTGAAGGGCTTTG
CCCTCTTTTGGGATATTATCCTCGCTCTGTTCGGCCTGGTTGTTATCGGC
CTTGGTGTGCACATCATCTACAAATTCGAGCACTTCAACACGGCCGCCTT
CGTCATCATCGCGGTGGGCGTGGTCGTCGTTCTGACCGCCCTTTTCGGGG
CTCTGGGAGCAGCGCGGGAGAGCAGTGCCACATCTAAGGTGTTCGTTGTT
ATTCTGATTGTCTTGGTCATACTGGAAGTTCTAGCAGTTGGGTTCCTGTG
GGTTTTCCAAACCTCGCTGCTGATTAACGTGGACAAAACGTTTGATAAAC
TGTGGAATGACCAGCCGGTGCCAATCAAGCCTGGCAACCAGAGTCAGATT
GCCAGCCTCGAGCGATGGTTGGATTGCTGCGGCAATGTGGGGCCCTCGGA
CTACATTCTGCCCCCGAATAGTTGCTACAACGGCGAGAGTGACAAACTGA
ATCTTGAAGGATGCCGGCAAAAGTTCCTGGACTTTATCGCCGATCGTTGG
ACGACATTTAATCTGGTTTCCCTGGTGCTATTGGGTGTGGAGCTGATTTG
CGCCCTGTTGGCCTATGTCCTGGCCAATAGCATCGTGAACCGCTGGCGAC
GCTCGAAGTACTATCAGAAATAGAAGCTTTCTAGACCAT

BS13114.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Eg-RA 657 CG12142-PA 1..657 17..673 3270 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Eg-RA 1188 CG12142-RA 189..845 17..673 3270 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7032326..7032503 241..418 875 99.4 Plus
2R 25286936 2R 7032571..7032745 418..592 875 100 Plus
2R 25286936 2R 7031748..7031912 77..241 825 100 Plus
2R 25286936 2R 7032808..7032890 591..673 415 100 Plus
2R 25286936 2R 7029099..7029158 17..76 300 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:46:10 has no hits.

BS13114.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:08 Download gff for BS13114.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eg-RA 1..657 17..673 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:01 Download gff for BS13114.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eg-RA 187..846 17..679 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:21 Download gff for BS13114.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eg-RA 189..839 17..667 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:08 Download gff for BS13114.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eg-RA 187..846 17..679 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:31 Download gff for BS13114.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eg-RA 189..839 17..667 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:31 Download gff for BS13114.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7029099..7029158 17..76 100 -> Plus
2R 7031748..7031912 77..241 100 -> Plus
2R 7032327..7032503 242..418 99 -> Plus
2R 7032572..7032745 419..592 100 -> Plus
2R 7032810..7032884 593..667 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:21 Download gff for BS13114.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2920077..2920250 419..592 100 -> Plus
arm_2R 2916604..2916663 17..76 100 -> Plus
arm_2R 2919253..2919417 77..241 100 -> Plus
arm_2R 2920315..2920389 593..667 100   Plus
arm_2R 2919832..2920008 242..418 99 -> Plus

BS13114.pep Sequence

Translation from 16 to 672

> BS13114.pep
MACSTNVLKGFALFWDIILALFGLVVIGLGVHIIYKFEHFNTAAFVIIAV
GVVVVLTALFGALGAARESSATSKVFVVILIVLVILEVLAVGFLWVFQTS
LLINVDKTFDKLWNDQPVPIKPGNQSQIASLERWLDCCGNVGPSDYILPP
NSCYNGESDKLNLEGCRQKFLDFIADRWTTFNLVSLVLLGVELICALLAY
VLANSIVNRWRRSKYYQK*

BS13114.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Eg-PA 218 CG12142-PA 1..218 1..218 1125 100 Plus
Tsp42Ef-PA 220 CG12845-PA 3..220 4..215 240 27.8 Plus
Tsp42Ea-PC 226 CG18817-PC 1..226 1..215 215 24.7 Plus
Tsp42Ea-PB 226 CG18817-PB 1..226 1..215 215 24.7 Plus
Tsp42Ea-PA 226 CG18817-PA 1..226 1..215 215 24.7 Plus