Clone Sequence Records
BS13120.complete Sequence
1403 bp assembled on 2010-06-25
GenBank Submission: KX801562
> BS13120.complete
GAAGTTATCAGTCGACATGGATGATGGAAATGAAAACATTAGTATGGAAG
TGGTGGAGCCCGAAGACGCCGAGAGCGACATGAGCTCTGACAGTGGTAGT
GACGCAGAAGACGATACCGCTGAGCCCAAAGCCCCCAAAGAGGTCTACTT
GCCCGGAACCAAACTCGCAGACGATGAGGAGCTGGTCTGCGATGAGAGTG
CGTACGTGATGCTGCACCAAGCTTCTACGGGAGCTCCCTGCCTGAGCTTT
GATGTCATTCCCGACGAGTTGGGCAGCGGACGGCAGTCGTTCCCGATGAC
GGCTTATATTGTGGCCGGCACGCAAGCTTCCCGCGCCCATGTCAACAACC
TTATTGTGATGAAAATGAGCAACCTGCACAAGACGCAGGACAATGACGGC
GACGAAGACGAGGAGCTAGAAGACGACCAAGACGACGTGACTGACAGGGA
GGAGCTCAAAAAGCCGCAGATGACATGCGCCCTTGTCAAGCACCAAGGGT
GCGTTAATCGCGTCCGTGCCCGCCGATTGGGCAATTCGGTCTACGCTGCC
TCCTGGAGCGAACTTGGTCGTGTGAACATTTGGGACCTAACTCAGCCATT
GCAGGCCGTGGAGAACGCTCAGTTGGCCAAGCAGTACGAGCAAAGCGAAG
CGCGTCCAGTGTTTACTTTTGGTGGCCATCAGCAGGAGGGCTTCGCCATC
GACTGGAGTCCCAGTGCAGATGGTGTACTGGCGACAGGGGACTGCCGGCG
AGACATACACGTGTGGACTCCGGTAGAAGACGGCACATGGAAAGTTGATC
AACGTCCCCTAGCGGGCCACTCACAGTCAGTTGAAGATCTGCAATGGAGT
CCAAACGAACGTAGCGTTCTCGCGTCCTGTTCGGTGGACAAAACCATCCG
AATTTGGGACTGCCGCGCCTCGCCTCAGAAAGCATGTATGCTGACATGCG
AGGACGCACACCAGAGCGACGTAAACGTGATTTCGTGGAATCGCAACGAG
CCTTTTATCGCCAGTGGCGGCGACGACGGCTACCTCCACATCTGGGACCT
ACGTCAGTTTCAGAGCAAAAAGCCGATTGCCACTTTTAAGCACCACACGG
ACCACATCACTACTGTCGAATGGAGTCCCGCAGAGGCTACCGTACTGGCG
TCAGGCGGTGACGATGACCAAATTGCTTTGTGGGATTTGGCTGTAGAGAA
GGACATCGATCAGGCGGTGGACCCGGCGCAAAACGAAGATGTCCTAAACA
AGTTGCCACCGCAATTGCTTTTTATTCACCAGGGACAAAAGGAGATTAAA
GAGCTACACTGGCACCCTCAACTGCCGGGCGTTCTACTTTCTACAGCCCA
CAGTGGCTTTAATATCTTTCGCACGATCAGTGTCTGAAAGCTTTCTAGAC
CAT
BS13120.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)09851-RB | 1371 | CG12792-PB | 1..1371 | 17..1387 | 6855 | 100 | Plus |
| l(2)09851-RA | 1371 | CG12792-PA | 1..1371 | 17..1387 | 6855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:47:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)09851-RB | 1811 | CG12792-RB | 100..1470 | 17..1387 | 6855 | 100 | Plus |
| l(2)09851-RA | 1536 | CG12792-RA | 100..1470 | 17..1387 | 6855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5754616..5755986 | 17..1387 | 6855 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:47:15 has no hits.
BS13120.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:52:41 Download gff for
BS13120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 89..1458 | 17..1386 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:33 Download gff for
BS13120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 100..1469 | 17..1386 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:01 Download gff for
BS13120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 100..1469 | 17..1386 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:01 Download gff for
BS13120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5754616..5755985 | 17..1386 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:33 Download gff for
BS13120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1642121..1643490 | 17..1386 | 100 | | Plus |
BS13120.5prime Sequence
769 bp (592 high quality bases) assembled on 2010-02-21
> BS13120.5prime
AATGAAAACATTAGTATGGAAGTGGTGGAGCCCGAAGACGCCGAGAGCGA
CATGAGCTCTGACAGTGGTAGTGACGCAGAAGACGATACCGCTGAGCCCA
AAGCCCCCAAAGAGGTCTACTTGCCCGGAACCAAACTCGCAGACGATGAG
GAGCTGGTCTGCGATGAGAGTGCGTACGTGATGCTGCACCAAGCTTCTAC
GGGAGCTCCCTGCCTGAGCTTTGATGTCATTCCCGACGAGTTGGGCAGCG
GACGGCAGTCGTTCCCGATGACGGCTTATATTGTGGCCGGCACGCAAGCT
TCCCGCGCCCATGTCAACAACCTTATTGTGATGAAAATGAGCAACCTGCA
CAAGACGCAGGACAATGACGGCGACGAAGACGAGGAGCTAGAAGACGACC
AAGACGACGTGACTGACAGGGAGGAGCTCAAAAAGCCGCAGATGACATGC
GCCCTTGTCAAGCACCAAGGGTGCGTTAATCGCGTCCGTGCCCGCCGATT
GGGCAATTCGGTCTACGCTGCCTCCCTGGAGCGAACTTGGTCGTGTGAAC
ATTTGGGAACTAACTCGGCCATTGCAGGCCGGGGAAAACGCTCAGTTGGC
CAACCAGTACGAGCAAAGCGAAGCGCGTCCAGGGGTTTCTTTTGGTGGCC
ATCCGCAGGAGGGCTTCGCCATCGACTGGAGTCCCAGTGGATATGGGGTC
TTGGCGAACGGGGATTGCCGGGGAAAACTTACACGTGGGGGATTCCGGTA
AAAAACGGCACTTGTAAAG
BS13120.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:14:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)09851-RB | 1811 | CG12792-RB | 112..877 | 1..769 | 3380 | 96.2 | Plus |
| l(2)09851-RA | 1536 | CG12792-RA | 112..877 | 1..769 | 3380 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:14:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5754628..5755393 | 1..769 | 3305 | 96.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:14:32 has no hits.
BS13120.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:43:04 Download gff for
BS13120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 101..806 | 1..707 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:12:44 Download gff for
BS13120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 112..817 | 1..707 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:58 Download gff for
BS13120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 112..817 | 1..707 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:58 Download gff for
BS13120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5754628..5755346 | 1..720 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:12:44 Download gff for
BS13120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1642133..1642851 | 1..720 | 97 | -> | Plus |
BS13120.3prime Sequence
865 bp (660 high quality bases) assembled on 2010-02-21
> BS13120.3prime
AAGCCACTGGTGGGCTGTAGAAAGTAGAACGCCCGGCAGTTGAGGGTGCC
AGTGTAGCTCTTTAATCTCCTTTTGTCCCTGGTGAATAAAAAGCAATTGC
GGTGGCAACTTGTTTAGGACATCTTCGTTTTGCGCCGGGTCCACCGCCTG
ATCGATGTCCTTCTCTACAGCCAAATCCCACAAAGCAATTTGGTCATCGT
CACCGCCTGACGCCAGTACGGTAGCCTCTGCGGGACTCCATTCGACAGTA
GTGATGTGGTCCGTGTGGTGCTTAAAAGTGGCAATCGGCTTTTTGCTCTG
AAACTGACGTAGGTCCCAGATGTGGAGGTAGCCGTCGTCGCCGCCACTGG
CGATAAAAGGCTCGTTGCGATTCCACGAAATCACGTTTACGTCGCTCTGG
TGTGCGTCCTCGCATGTCAGCATACATGCTTTCTGAGGCGAGGCGCGGCA
GTCCCAAATTCGGATGGTTTTGTCCACCGAACAGGACGCGAGAACGCTAC
GTTCGTTTGGACTCCATTGCAAATCTTCAACTGACTGTGAGTGGCCCGCT
AGGGGACGTTGATCAACTTTCCATGTGCCGTCTTCTACCCGGAGTCCACA
CCTGTATGTCTCGCCGGCAGTCCCCTGTCGCCAGTACACCATCTGCACTG
GGACTCCAGACCAAGGCAAAGCCCTTCCTGCTGAGGGCCCACCAAAGTAA
ACACTGGACGGGCCTTTCCTTTGCTCGTACTGCTTGGCCAACTGAACGGT
CTCCCCGGCCTGCAATGGGTTGAAGTTAGGTCCCAAAGGTTTCCCCGAAC
CAATTTCCCTCCAAGAGGGCACCATAACCCAAATGTCCCAATCGGGGGGG
GAAGGAAGCAATTAA
BS13120.3prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 02:38:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)09851-RB | 1811 | CG12792-RB | 602..1442 | 849..1 | 3565 | 95.5 | Minus |
| l(2)09851-RA | 1536 | CG12792-RA | 602..1442 | 849..1 | 3565 | 95.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 02:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5755174..5755950 | 791..10 | 3410 | 96.9 | Minus |
Blast to na_te.dros performed on 2015-01-30 02:37:58 has no hits.
BS13120.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:43:03 Download gff for
BS13120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 636..1431 | 1..803 | 96 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:02:39 Download gff for
BS13120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 647..1442 | 1..803 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:03:40 Download gff for
BS13120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 647..1442 | 1..803 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:03:40 Download gff for
BS13120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5755163..5755958 | 1..803 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:02:39 Download gff for
BS13120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1642668..1643463 | 1..803 | 96 | | Minus |
BS13120.pep Sequence
Translation from 16 to 1386
> BS13120.pep
MDDGNENISMEVVEPEDAESDMSSDSGSDAEDDTAEPKAPKEVYLPGTKL
ADDEELVCDESAYVMLHQASTGAPCLSFDVIPDELGSGRQSFPMTAYIVA
GTQASRAHVNNLIVMKMSNLHKTQDNDGDEDEELEDDQDDVTDREELKKP
QMTCALVKHQGCVNRVRARRLGNSVYAASWSELGRVNIWDLTQPLQAVEN
AQLAKQYEQSEARPVFTFGGHQQEGFAIDWSPSADGVLATGDCRRDIHVW
TPVEDGTWKVDQRPLAGHSQSVEDLQWSPNERSVLASCSVDKTIRIWDCR
ASPQKACMLTCEDAHQSDVNVISWNRNEPFIASGGDDGYLHIWDLRQFQS
KKPIATFKHHTDHITTVEWSPAEATVLASGGDDDQIALWDLAVEKDIDQA
VDPAQNEDVLNKLPPQLLFIHQGQKEIKELHWHPQLPGVLLSTAHSGFNI
FRTISV*
BS13120.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)09851-PB | 456 | CG12792-PB | 1..456 | 1..456 | 2434 | 100 | Plus |
| l(2)09851-PA | 456 | CG12792-PA | 1..456 | 1..456 | 2434 | 100 | Plus |
| Caf1-PA | 430 | CG4236-PA | 5..398 | 24..444 | 337 | 27.6 | Plus |
| Caf1-PB | 429 | CG4236-PB | 124..397 | 157..444 | 336 | 31.2 | Plus |
| CG1109-PB | 807 | CG1109-PB | 213..394 | 206..397 | 199 | 26.8 | Plus |
