Clone BS13123 Report

Search the DGRC for BS13123

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:131
Well:23
Vector:pDNR-Dual
Associated Gene/Transcriptmab-21-RA
Protein status:BS13123.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13123.5prime Sequence

501 bp (499 high quality bases) assembled on 2006-10-13

> BS13123.5prime
GAAGTTATCAGTCGACATGCTGGTGCCGTCGGACATGATTGCGGCGCAGT
CCAAGATGGTCTACCAGATGAACAAGTACTGTGCGGACCGTGTCCAGGTG
CGCAAGGCGCAGATCCACAAGCAGATCCAGGAGGTGTGTCGCATCGTCCA
GGACGTGCTCAAGGAGGTGGAGGTGCAGGAGCCGCGCTTCATATCCTCGC
TGAACGACTACAACGGTCGCTTCGAGGGCCTGGAGGTCATATCGCCCACG
GAATTCGAGATCATCATCTACCTGAATCAGATGGGCGTGCTCAACTTTGT
GGACGATGGCACCTTGCCGGGATGTGCCGTCCTGAAGCTGAGCGATGGAA
GGAAGAGATCCATGTCCCTGTGGGTGGAGTTCATCACGGCCAGTGGGTAT
CTGTCCGCCCGAAAGATCCGCTCCAGGTTCCAGACCCTGGTGGCCCAGGC
CTGCGACAAGTGCGCCTACCGCGACATTGTCAAGATGATCGCCGACACCA
C

BS13123.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4746-PA 1098 mab-2-RA 1..485 17..501 2425 100 Plus
CG4766-PA 1107 CG4766-RA 283..404 299..420 385 92.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
mab-21-RA 2082 CG4746-RA 360..844 17..501 2425 100 Plus
CG4766-RA 2673 CG4766-RA 728..1085 143..500 830 82.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6012338..6012822 501..17 2425 100 Minus
X 23542271 X 5999220..5999499 500..221 725 83.9 Minus
Blast to na_te.dros performed on 2015-02-12 04:06:27 has no hits.

BS13123.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:26 Download gff for BS13123.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4746-PA 1..485 17..501 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:51 Download gff for BS13123.5prime
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 358..844 14..501 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:16 Download gff for BS13123.5prime
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 358..844 14..501 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:16 Download gff for BS13123.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6012338..6012824 14..501 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:51 Download gff for BS13123.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5906371..5906857 14..501 99   Minus

BS13123.3prime Sequence

663 bp (604 high quality bases) assembled on 2006-10-13

> BS13123.3prime
ATGGTCTAGAAAGCTTCTACAGCTCCTCCAGGCAACGGACATTGGTCAGC
ATGATCCGGGTGAGCCGCCAAACCTGCTTGGCGGCATTCTCCAGGGCACC
CGGCGACTTGCCCTTGAACAGATCCATATTGGGCAGGAAGTAGTGCGGAC
AGCGGCGGCACTGCAGGCAGGATATCAGCTGCAGGAATATCCCATTGATC
CGGTCCGCGATGCAGTTCTCCTCCCATTCCATCTCGCGCGGATGCTTCTC
GCATTCGTAGAGCAGCAGGGTCTTCAGGTGGTACGACGTCACCGGATTGC
CGGGCAGGTCCAGGTGCCGATCACGCAGGGTCTTCAGAATGCTCAGGCAG
CGTCGTCGACTCGCTCCTTGCAGCAGCCGGTTTTCGGCGTCGGTGAAGCT
GAGCACCCAGGCGTCGCCCTCCATGGCGGAGTTCTTGCCCTGCAGTGCGA
TGCACTCCTTGGATAGCATGTCGAATCCCTCGGTCTTCACCTCGGCGACG
ATGTTGGGATGCGGCCATGGGATGCCCGGCAGCGGCCAGTGGGAGGCGGA
TCTCGGCCAAAGGCCGGCGCACTTAAAGGCGGGCGTAATCTGGACAATGA
TGCGCTCCCGGATGCGCAACTTTACCTCCGTGGTGTCGGCGATCATCTTG
ACAATGTCGCGGT

BS13123.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4746-PA 1098 mab-2-RA 452..1098 663..17 3210 99.8 Minus
CG4766-PA 1107 CG4766-RA 909..989 215..135 230 91.3 Minus
CG4766-PA 1107 CG4766-RA 699..758 425..366 175 91.6 Minus
CG4766-PA 1107 CG4766-RA 844..887 280..237 170 95.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
mab-21-RA 2082 CG4746-RA 811..1458 663..16 3225 99.8 Minus
CG4766-RA 2673 CG4766-RA 1053..1659 663..66 1190 80.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6008807..6009159 16..368 1765 100 Plus
X 23542271 X 6012074..6012371 366..663 1475 99.7 Plus
X 23542271 X 5998522..5998816 66..360 650 81.4 Plus
X 23542271 X 5998946..5999252 366..663 525 78.8 Plus
Blast to na_te.dros performed on 2015-02-02 18:49:47 has no hits.

BS13123.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:26 Download gff for BS13123.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4746-PA 452..1098 17..663 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:08 Download gff for BS13123.3prime
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 811..1466 5..663 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:52 Download gff for BS13123.3prime
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 811..1466 5..663 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:52 Download gff for BS13123.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6008799..6009157 5..366 98 <- Plus
X 6012075..6012371 367..663 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:08 Download gff for BS13123.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5902832..5903190 5..366 98 <- Plus
arm_X 5906108..5906404 367..663 99   Plus

BS13123.complete Sequence

1130 bp assembled on 2006-11-01

GenBank Submission: FJ637387

> BS13123.complete
GAAGTTATCAGTCGACATGCTGGTGCCGTCGGACATGATTGCGGCGCAGT
CCAAGATGGTCTACCAGATGAACAAGTACTGTGCGGACCGTGTCCAGGTG
CGCAAGGCGCAGATCCACAAGCAGATCCAGGAGGTGTGTCGCATCGTCCA
GGACGTGCTCAAGGAGGTGGAGGTGCAGGAGCCGCGCTTCATATCCTCGC
TGAACGACTACAACGGTCGCTTCGAGGGCCTGGAGGTCATATCGCCCACG
GAATTCGAGATCATCATCTACCTGAATCAGATGGGCGTGCTCAACTTTGT
GGACGATGGCACCTTGCCGGGATGTGCCGTCCTGAAGCTGAGCGATGGAA
GGAAGAGATCCATGTCCCTGTGGGTGGAGTTCATCACGGCCAGTGGGTAT
CTGTCCGCCCGAAAGATCCGCTCCAGGTTCCAGACCCTGGTGGCCCAGGC
CTGCGACAAGTGCGCCTACCGCGACATTGTCAAGATGATCGCCGACACCA
CGGAGGTAAAGCTGCGCATCCGGGAGCGCATCATTGTCCAGATTACGCCC
GCCTTTAAGTGCGCCGGCCTTTGGCCGAGATCCGCCTCCCACTGGCCGCT
GCCGGGCATCCCATGGCCGCATCCCAACATCGTCGCCGAGGTGAAGACCG
AGGGATTCGACATGCTATCCAAGGAGTGCATCGCACTGCAGGGCAAGAAC
TCCGCCATGGAGGGCGACGCCTGGGTGCTCAGCTTCACCGACGCCGAAAA
CCGGCTGCTGCAAGGAGCGAGTCGACGACGCTGCCTGAGCATTCTGAAGA
CCCTGCGTGATCGGCACCTGGACCTGCCCGGCAATCCGGTGACGTCGTAC
CACCTGAAGACCCTGCTGCTCTACGAATGCGAGAAGCATCCGCGCGAGAT
GGAATGGGAGGAGAACTGCATCGCGGACCGGATCAATGGGATATTCCTGC
AGCTGATATCCTGCCTGCAGTGCCGCCGCTGTCCGCACTACTTCCTGCCC
AATATGGATCTGTTCAAGGGCAAGTCGCCGGGTGCCCTGGAGAATGCCGC
CAAGCAGGTTTGGCGGCTCACCCGGATCATGCTGACCAATGTCCGTTGCC
TGGAGGAGCTGTAGAAGCTTTCTAGACCAT

BS13123.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
mab-21-RA 1098 CG4746-PA 1..1098 17..1114 5490 100 Plus
CG4766-RA 1107 CG4766-PA 127..1058 143..1065 1865 80.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
mab-21-RA 2082 CG4746-RA 360..1458 17..1115 5495 100 Plus
CG4766-RA 2673 CG4766-RA 728..1659 143..1065 1865 80.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6012074..6012822 765..17 3745 100 Minus
X 23542271 X 6008807..6009159 1115..763 1765 100 Minus
X 23542271 X 5998946..5999499 765..221 1145 80.9 Minus
X 23542271 X 5998522..5998816 1065..771 650 81.4 Minus
Blast to na_te.dros performed on 2014-11-27 14:18:00 has no hits.

BS13123.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:12 Download gff for BS13123.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 1..1098 17..1114 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:04 Download gff for BS13123.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 355..1463 14..1126 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:13 Download gff for BS13123.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 360..1457 17..1114 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:12 Download gff for BS13123.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 355..1463 14..1126 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:05 Download gff for BS13123.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 360..1457 17..1114 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:05 Download gff for BS13123.complete
Subject Subject Range Query Range Percent Splice Strand
X 6008808..6009157 765..1114 100 <- Minus
X 6012075..6012822 17..764 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:13 Download gff for BS13123.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5902841..5903190 765..1114 100 <- Minus
arm_X 5906108..5906855 17..764 100   Minus

BS13123.pep Sequence

Translation from 16 to 1113

> BS13123.pep
MLVPSDMIAAQSKMVYQMNKYCADRVQVRKAQIHKQIQEVCRIVQDVLKE
VEVQEPRFISSLNDYNGRFEGLEVISPTEFEIIIYLNQMGVLNFVDDGTL
PGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQACDKCA
YRDIVKMIADTTEVKLRIRERIIVQITPAFKCAGLWPRSASHWPLPGIPW
PHPNIVAEVKTEGFDMLSKECIALQGKNSAMEGDAWVLSFTDAENRLLQG
ASRRRCLSILKTLRDRHLDLPGNPVTSYHLKTLLLYECEKHPREMEWEEN
CIADRINGIFLQLISCLQCRRCPHYFLPNMDLFKGKSPGALENAAKQVWR
LTRIMLTNVRCLEEL*

BS13123.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
mab-21-PA 365 CG4746-PA 1..365 1..365 1922 100 Plus
CG4766-PA 368 CG4766-PA 1..368 1..365 1567 77.7 Plus