Clone Sequence Records
BS13123.5prime Sequence
501 bp (499 high quality bases) assembled on 2006-10-13
> BS13123.5prime
GAAGTTATCAGTCGACATGCTGGTGCCGTCGGACATGATTGCGGCGCAGT
CCAAGATGGTCTACCAGATGAACAAGTACTGTGCGGACCGTGTCCAGGTG
CGCAAGGCGCAGATCCACAAGCAGATCCAGGAGGTGTGTCGCATCGTCCA
GGACGTGCTCAAGGAGGTGGAGGTGCAGGAGCCGCGCTTCATATCCTCGC
TGAACGACTACAACGGTCGCTTCGAGGGCCTGGAGGTCATATCGCCCACG
GAATTCGAGATCATCATCTACCTGAATCAGATGGGCGTGCTCAACTTTGT
GGACGATGGCACCTTGCCGGGATGTGCCGTCCTGAAGCTGAGCGATGGAA
GGAAGAGATCCATGTCCCTGTGGGTGGAGTTCATCACGGCCAGTGGGTAT
CTGTCCGCCCGAAAGATCCGCTCCAGGTTCCAGACCCTGGTGGCCCAGGC
CTGCGACAAGTGCGCCTACCGCGACATTGTCAAGATGATCGCCGACACCA
C
BS13123.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4746-PA | 1098 | mab-2-RA | 1..485 | 17..501 | 2425 | 100 | Plus |
CG4766-PA | 1107 | CG4766-RA | 283..404 | 299..420 | 385 | 92.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mab-21-RA | 2082 | CG4746-RA | 360..844 | 17..501 | 2425 | 100 | Plus |
CG4766-RA | 2673 | CG4766-RA | 728..1085 | 143..500 | 830 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:06:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6012338..6012822 | 501..17 | 2425 | 100 | Minus |
X | 23542271 | X | 5999220..5999499 | 500..221 | 725 | 83.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:06:27 has no hits.
BS13123.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:26 Download gff for
BS13123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4746-PA | 1..485 | 17..501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:51 Download gff for
BS13123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-21-RA | 358..844 | 14..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:16 Download gff for
BS13123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-21-RA | 358..844 | 14..501 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:16 Download gff for
BS13123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6012338..6012824 | 14..501 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:51 Download gff for
BS13123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5906371..5906857 | 14..501 | 99 | | Minus |
BS13123.3prime Sequence
663 bp (604 high quality bases) assembled on 2006-10-13
> BS13123.3prime
ATGGTCTAGAAAGCTTCTACAGCTCCTCCAGGCAACGGACATTGGTCAGC
ATGATCCGGGTGAGCCGCCAAACCTGCTTGGCGGCATTCTCCAGGGCACC
CGGCGACTTGCCCTTGAACAGATCCATATTGGGCAGGAAGTAGTGCGGAC
AGCGGCGGCACTGCAGGCAGGATATCAGCTGCAGGAATATCCCATTGATC
CGGTCCGCGATGCAGTTCTCCTCCCATTCCATCTCGCGCGGATGCTTCTC
GCATTCGTAGAGCAGCAGGGTCTTCAGGTGGTACGACGTCACCGGATTGC
CGGGCAGGTCCAGGTGCCGATCACGCAGGGTCTTCAGAATGCTCAGGCAG
CGTCGTCGACTCGCTCCTTGCAGCAGCCGGTTTTCGGCGTCGGTGAAGCT
GAGCACCCAGGCGTCGCCCTCCATGGCGGAGTTCTTGCCCTGCAGTGCGA
TGCACTCCTTGGATAGCATGTCGAATCCCTCGGTCTTCACCTCGGCGACG
ATGTTGGGATGCGGCCATGGGATGCCCGGCAGCGGCCAGTGGGAGGCGGA
TCTCGGCCAAAGGCCGGCGCACTTAAAGGCGGGCGTAATCTGGACAATGA
TGCGCTCCCGGATGCGCAACTTTACCTCCGTGGTGTCGGCGATCATCTTG
ACAATGTCGCGGT
BS13123.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4746-PA | 1098 | mab-2-RA | 452..1098 | 663..17 | 3210 | 99.8 | Minus |
CG4766-PA | 1107 | CG4766-RA | 909..989 | 215..135 | 230 | 91.3 | Minus |
CG4766-PA | 1107 | CG4766-RA | 699..758 | 425..366 | 175 | 91.6 | Minus |
CG4766-PA | 1107 | CG4766-RA | 844..887 | 280..237 | 170 | 95.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:49:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mab-21-RA | 2082 | CG4746-RA | 811..1458 | 663..16 | 3225 | 99.8 | Minus |
CG4766-RA | 2673 | CG4766-RA | 1053..1659 | 663..66 | 1190 | 80.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6008807..6009159 | 16..368 | 1765 | 100 | Plus |
X | 23542271 | X | 6012074..6012371 | 366..663 | 1475 | 99.7 | Plus |
X | 23542271 | X | 5998522..5998816 | 66..360 | 650 | 81.4 | Plus |
X | 23542271 | X | 5998946..5999252 | 366..663 | 525 | 78.8 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:49:47 has no hits.
BS13123.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:26 Download gff for
BS13123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4746-PA | 452..1098 | 17..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:08 Download gff for
BS13123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-21-RA | 811..1466 | 5..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:52 Download gff for
BS13123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-21-RA | 811..1466 | 5..663 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:52 Download gff for
BS13123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6008799..6009157 | 5..366 | 98 | <- | Plus |
X | 6012075..6012371 | 367..663 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:08 Download gff for
BS13123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5902832..5903190 | 5..366 | 98 | <- | Plus |
arm_X | 5906108..5906404 | 367..663 | 99 | | Plus |
BS13123.complete Sequence
1130 bp assembled on 2006-11-01
GenBank Submission: FJ637387
> BS13123.complete
GAAGTTATCAGTCGACATGCTGGTGCCGTCGGACATGATTGCGGCGCAGT
CCAAGATGGTCTACCAGATGAACAAGTACTGTGCGGACCGTGTCCAGGTG
CGCAAGGCGCAGATCCACAAGCAGATCCAGGAGGTGTGTCGCATCGTCCA
GGACGTGCTCAAGGAGGTGGAGGTGCAGGAGCCGCGCTTCATATCCTCGC
TGAACGACTACAACGGTCGCTTCGAGGGCCTGGAGGTCATATCGCCCACG
GAATTCGAGATCATCATCTACCTGAATCAGATGGGCGTGCTCAACTTTGT
GGACGATGGCACCTTGCCGGGATGTGCCGTCCTGAAGCTGAGCGATGGAA
GGAAGAGATCCATGTCCCTGTGGGTGGAGTTCATCACGGCCAGTGGGTAT
CTGTCCGCCCGAAAGATCCGCTCCAGGTTCCAGACCCTGGTGGCCCAGGC
CTGCGACAAGTGCGCCTACCGCGACATTGTCAAGATGATCGCCGACACCA
CGGAGGTAAAGCTGCGCATCCGGGAGCGCATCATTGTCCAGATTACGCCC
GCCTTTAAGTGCGCCGGCCTTTGGCCGAGATCCGCCTCCCACTGGCCGCT
GCCGGGCATCCCATGGCCGCATCCCAACATCGTCGCCGAGGTGAAGACCG
AGGGATTCGACATGCTATCCAAGGAGTGCATCGCACTGCAGGGCAAGAAC
TCCGCCATGGAGGGCGACGCCTGGGTGCTCAGCTTCACCGACGCCGAAAA
CCGGCTGCTGCAAGGAGCGAGTCGACGACGCTGCCTGAGCATTCTGAAGA
CCCTGCGTGATCGGCACCTGGACCTGCCCGGCAATCCGGTGACGTCGTAC
CACCTGAAGACCCTGCTGCTCTACGAATGCGAGAAGCATCCGCGCGAGAT
GGAATGGGAGGAGAACTGCATCGCGGACCGGATCAATGGGATATTCCTGC
AGCTGATATCCTGCCTGCAGTGCCGCCGCTGTCCGCACTACTTCCTGCCC
AATATGGATCTGTTCAAGGGCAAGTCGCCGGGTGCCCTGGAGAATGCCGC
CAAGCAGGTTTGGCGGCTCACCCGGATCATGCTGACCAATGTCCGTTGCC
TGGAGGAGCTGTAGAAGCTTTCTAGACCAT
BS13123.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:18:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mab-21-RA | 1098 | CG4746-PA | 1..1098 | 17..1114 | 5490 | 100 | Plus |
CG4766-RA | 1107 | CG4766-PA | 127..1058 | 143..1065 | 1865 | 80.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mab-21-RA | 2082 | CG4746-RA | 360..1458 | 17..1115 | 5495 | 100 | Plus |
CG4766-RA | 2673 | CG4766-RA | 728..1659 | 143..1065 | 1865 | 80.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6012074..6012822 | 765..17 | 3745 | 100 | Minus |
X | 23542271 | X | 6008807..6009159 | 1115..763 | 1765 | 100 | Minus |
X | 23542271 | X | 5998946..5999499 | 765..221 | 1145 | 80.9 | Minus |
X | 23542271 | X | 5998522..5998816 | 1065..771 | 650 | 81.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:18:00 has no hits.
BS13123.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:12 Download gff for
BS13123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-21-RA | 1..1098 | 17..1114 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:04 Download gff for
BS13123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-21-RA | 355..1463 | 14..1126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:13 Download gff for
BS13123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-21-RA | 360..1457 | 17..1114 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:12 Download gff for
BS13123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-21-RA | 355..1463 | 14..1126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:05 Download gff for
BS13123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mab-21-RA | 360..1457 | 17..1114 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:05 Download gff for
BS13123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6008808..6009157 | 765..1114 | 100 | <- | Minus |
X | 6012075..6012822 | 17..764 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:13 Download gff for
BS13123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5902841..5903190 | 765..1114 | 100 | <- | Minus |
arm_X | 5906108..5906855 | 17..764 | 100 | | Minus |
BS13123.pep Sequence
Translation from 16 to 1113
> BS13123.pep
MLVPSDMIAAQSKMVYQMNKYCADRVQVRKAQIHKQIQEVCRIVQDVLKE
VEVQEPRFISSLNDYNGRFEGLEVISPTEFEIIIYLNQMGVLNFVDDGTL
PGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQACDKCA
YRDIVKMIADTTEVKLRIRERIIVQITPAFKCAGLWPRSASHWPLPGIPW
PHPNIVAEVKTEGFDMLSKECIALQGKNSAMEGDAWVLSFTDAENRLLQG
ASRRRCLSILKTLRDRHLDLPGNPVTSYHLKTLLLYECEKHPREMEWEEN
CIADRINGIFLQLISCLQCRRCPHYFLPNMDLFKGKSPGALENAAKQVWR
LTRIMLTNVRCLEEL*
BS13123.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mab-21-PA | 365 | CG4746-PA | 1..365 | 1..365 | 1922 | 100 | Plus |
CG4766-PA | 368 | CG4766-PA | 1..368 | 1..365 | 1567 | 77.7 | Plus |