Clone BS13126 Report

Search the DGRC for BS13126

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:131
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptAdSS-RA
Protein status:BS13126.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13126.3prime Sequence

735 bp (637 high quality bases) assembled on 2006-10-13

> BS13126.3prime
ATGGTCTAGAAAGCTTTTAATGCACATTGATGATGGACTCACGGCCCTTT
CCAACGCCCACCCAGCGCACGGGCACACTCAGCTCGCTCTCCAGAAACCG
GACGTAGCTCTGGGCATTCTCCGGCAGCTCCTTGAAGTTGCGCACCTCCT
CAGTGGATGTCTGCCAGCCAGGCAGCACGGCGTACTCCACCTCGATGTTT
CCGAGCTCGGCAATGGTGCCGGGGAAGTGGTCAAGCTTCTCGCCATTGGG
CTTCTTGTAGGCCACGGCCACCTTGATCTCCGGCAGCGTGTCGAGAATAT
CCAGCTTGGTCAGACAGATGCACGTGTAGCCGTTGACCAGCGAGGTGTAC
TTCAGCAGCGGTATGTCCAGCCAGCCGCAGCGGCGCTTCCGCTTGGTAGT
GACACCGACTTCAAAGCCGCGCGTCTGCAGCAAGTCGCCAATATCATTTA
GCTGCTCGGTGGGGAATGGACCGTCGCCCACTCGCGTCGTATAGGCCTTG
ACCACGCCAATCACCTCGCCAATCGTCTGCGGGGGCAGACCCAGGCCCGT
GAGAACACCGCCAATGCTGCAGTTGCTGCTCGTCACATACGGATACGTGC
CGAAGTCGATGTCCAGCATGGCCGCGTTGGCGCCTTCGACCAAGATCGTC
TTGCCGTTGCGCAGGGCAGTGTGCAGGAAGCAAATGGTGTCCTTGACATA
GGGACGAACCTTATCCGCGTAGTCCTTGTAGCGGG

BS13126.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17273-PA 1344 CG17273-RA 626..1344 735..17 3595 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
AdSS-RA 1951 CG17273-RA 760..1478 735..17 3595 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20825140..20825568 17..445 2145 100 Plus
3R 32079331 3R 20825632..20825922 445..735 1455 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:24:34 has no hits.

BS13126.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:28 Download gff for BS13126.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17273-PA 626..1344 17..735 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:40 Download gff for BS13126.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 760..1483 13..735 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:41 Download gff for BS13126.3prime
Subject Subject Range Query Range Percent Splice Strand
AdSS-RA 760..1483 13..735 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:41 Download gff for BS13126.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20825135..20825568 13..445 99 <- Plus
3R 20825633..20825922 446..735 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:40 Download gff for BS13126.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16650857..16651290 13..445 99 <- Plus
arm_3R 16651355..16651644 446..735 100   Plus

BS13126.5prime Sequence

730 bp (726 high quality bases) assembled on 2006-10-13

> BS13126.5prime
GAAGTTATCAGTCGACATGTCTGCCAGCGCCACCAACGGCACGCACTACG
AGCAGCTGCACCAAGGCCGCACCAAGATGTACAAGTCAAAGGTGGACGTC
GTCCTGGGAGCCCAGTGGGGCGACGAGGGCAAAGGCAAAGTGGTGGACAT
GCTGGCCTCCGATGTGGACATCGTCTGCAGGTGTCAGGGCGGCAACAACG
CTGGACACACTGTGGTGGCTAATGGCACGGAGTTCGACTTCCATCTCCTG
CCCAGTGGAGTTGTGAACGAGAAATGCGTTTCCGTCATTGGCAATGGCGT
CGTCATTCACCTGCCCTCGCTATTCGACGAGGTGCTGAAGAACGAAGCCA
AGGGGCTGCAGCACCTAGAGAACCGGCTGATCATCTCGGATCGTGCCCAC
CTGGTTTTCGACTTCCATCAGCATGTGGATGGCATGCAGGAGGCTGAGAA
GGGCGGCAAGTCGCTCGGCACCACCAAGAAGGGCATCGGTCCGGCTTACT
CCAGCAAGGCTACCCGCAATGGCATCCGAGTGGGCGAGCTGCTCGGCGAC
TTCAATCTATTCAGCGAAAAGTTCAAGTCGATTGTGGCCACGCACGTGCG
CCTGTTCCCATCGATTAACGTCGACGTAGAGGCCGAGCTGGCCCGCTACA
AGGACTACGCGGATAAGGTTCGTCCCTATGTCAAGGACACCATTTGCTTC
CTGCACACTGCCCTGCGCAACGGCAAGACG

BS13126.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17273-PA 1344 CG17273-RA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
AdSS-RA 1951 CG17273-RA 135..848 17..730 3570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20826062..20826344 572..290 1415 100 Minus
3R 32079331 3R 20830275..20830446 188..17 860 100 Minus
3R 32079331 3R 20825834..20825993 730..571 800 100 Minus
3R 32079331 3R 20827979..20828085 291..185 535 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:19:20 has no hits.

BS13126.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:29 Download gff for BS13126.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17273-PA 1..714 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:17:37 Download gff for BS13126.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 132..848 14..730 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:26 Download gff for BS13126.5prime
Subject Subject Range Query Range Percent Splice Strand
AdSS-RA 132..848 14..730 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:26 Download gff for BS13126.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20825834..20825993 571..730 100 <- Minus
3R 20826064..20826343 291..570 100 <- Minus
3R 20827980..20828082 188..290 100 <- Minus
3R 20830276..20830449 14..187 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:17:37 Download gff for BS13126.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16651556..16651715 571..730 100 <- Minus
arm_3R 16651786..16652065 291..570 100 <- Minus
arm_3R 16653702..16653804 188..290 100 <- Minus
arm_3R 16655998..16656171 14..187 99   Minus

BS13126.complete Sequence

1376 bp assembled on 2006-11-01

GenBank Submission: FJ637388

> BS13126.complete
GAAGTTATCAGTCGACATGTCTGCCAGCGCCACCAACGGCACGCACTACG
AGCAGCTGCACCAAGGCCGCACCAAGATGTACAAGTCAAAGGTGGACGTC
GTCCTGGGAGCCCAGTGGGGCGACGAGGGCAAAGGCAAAGTGGTGGACAT
GCTGGCCTCCGATGTGGACATCGTCTGCAGGTGTCAGGGCGGCAACAACG
CTGGACACACTGTGGTGGCTAATGGCACGGAGTTCGACTTCCATCTCCTG
CCCAGTGGAGTTGTGAACGAGAAATGCGTTTCCGTCATTGGCAATGGCGT
CGTCATTCACCTGCCCTCGCTATTCGACGAGGTGCTGAAGAACGAAGCCA
AGGGGCTGCAGCACCTAGAGAACCGGCTGATCATCTCGGATCGTGCCCAC
CTGGTTTTCGACTTCCATCAGCATGTGGATGGCATGCAGGAGGCTGAGAA
GGGCGGCAAGTCGCTCGGCACCACCAAGAAGGGCATCGGTCCGGCTTACT
CCAGCAAGGCTACCCGCAATGGCATCCGAGTGGGCGAGCTGCTCGGCGAC
TTCAATCTATTCAGCGAAAAGTTCAAGTCGATTGTGGCCACGCACGTGCG
CCTGTTCCCATCGATTAACGTCGACGTAGAGGCCGAGCTGGCCCGCTACA
AGGACTACGCGGATAAGGTTCGTCCCTATGTCAAGGACACCATTTGCTTC
CTGCACACTGCCCTGCGCAACGGCAAGACGATCTTGGTCGAAGGCGCCAA
CGCGGCCATGCTGGACATCGACTTCGGCACGTATCCGTATGTGACGAGCA
GCAACTGCAGCATTGGCGGTGTTCTCACGGGCCTGGGTCTGCCCCCGCAG
ACGATTGGCGAGGTGATTGGCGTGGTCAAGGCCTATACGACGCGAGTGGG
CGACGGTCCATTCCCCACCGAGCAGCTAAATGATATTGGCGACTTGCTGC
AGACGCGCGGCTTTGAAGTCGGTGTCACTACCAAGCGGAAGCGCCGCTGC
GGCTGGCTGGACATACCGCTGCTGAAGTACACCTCGCTGGTCAACGGCTA
CACGTGCATCTGTCTGACCAAGCTGGATATTCTCGACACGCTGCCGGAGA
TCAAGGTGGCCGTGGCCTACAAGAAGCCCAATGGCGAGAAGCTTGACCAC
TTCCCCGGCACCATTGCCGAGCTCGGAAACATCGAGGTGGAGTACGCCGT
GCTGCCTGGCTGGCAGACATCCACTGAGGAGGTGCGCAACTTCAAGGAGC
TGCCGGAGAATGCCCAGAGCTACGTCCGGTTTCTGGAGAGCGAGCTGAGT
GTGCCCGTGCGCTGGGTGGGCGTTGGAAAGGGCCGTGAGTCCATCATCAA
TGTGCATTAAAAGCTTTCTAGACCAT

BS13126.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
AdSS-RA 1344 CG17273-PA 1..1344 17..1360 6720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
AdSS-RA 1951 CG17273-RA 135..1478 17..1360 6720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20825140..20825568 1360..932 2145 100 Minus
3R 32079331 3R 20825632..20825993 932..571 1810 100 Minus
3R 32079331 3R 20826062..20826344 572..290 1415 100 Minus
3R 32079331 3R 20830275..20830446 188..17 860 100 Minus
3R 32079331 3R 20827979..20828085 291..185 535 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:18:18 has no hits.

BS13126.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:13 Download gff for BS13126.complete
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 1..1344 17..1360 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:06 Download gff for BS13126.complete
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 167..1518 14..1364 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:28 Download gff for BS13126.complete
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 135..1476 17..1358 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:13 Download gff for BS13126.complete
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 167..1518 14..1364 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:59 Download gff for BS13126.complete
Subject Subject Range Query Range Percent Splice Strand
AdSS-RA 135..1476 17..1358 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:59 Download gff for BS13126.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20825142..20825568 932..1358 100 <- Minus
3R 20825633..20825993 571..931 100 <- Minus
3R 20826064..20826343 291..570 100 <- Minus
3R 20827980..20828082 188..290 100 <- Minus
3R 20830276..20830446 17..187 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:28 Download gff for BS13126.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16650864..16651290 932..1358 100 <- Minus
arm_3R 16651355..16651715 571..931 100 <- Minus
arm_3R 16651786..16652065 291..570 100 <- Minus
arm_3R 16653702..16653804 188..290 100 <- Minus
arm_3R 16655998..16656168 17..187 100   Minus

BS13126.pep Sequence

Translation from 16 to 1359

> BS13126.pep
MSASATNGTHYEQLHQGRTKMYKSKVDVVLGAQWGDEGKGKVVDMLASDV
DIVCRCQGGNNAGHTVVANGTEFDFHLLPSGVVNEKCVSVIGNGVVIHLP
SLFDEVLKNEAKGLQHLENRLIISDRAHLVFDFHQHVDGMQEAEKGGKSL
GTTKKGIGPAYSSKATRNGIRVGELLGDFNLFSEKFKSIVATHVRLFPSI
NVDVEAELARYKDYADKVRPYVKDTICFLHTALRNGKTILVEGANAAMLD
IDFGTYPYVTSSNCSIGGVLTGLGLPPQTIGEVIGVVKAYTTRVGDGPFP
TEQLNDIGDLLQTRGFEVGVTTKRKRRCGWLDIPLLKYTSLVNGYTCICL
TKLDILDTLPEIKVAVAYKKPNGEKLDHFPGTIAELGNIEVEYAVLPGWQ
TSTEEVRNFKELPENAQSYVRFLESELSVPVRWVGVGKGRESIINVH*

BS13126.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
AdSS-PA 447 CG17273-PA 1..447 1..447 2339 100 Plus