Clone BS13143 Report

Search the DGRC for BS13143

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:131
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG7519-RA
Protein status:BS13143.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13143.3prime Sequence

513 bp (513 high quality bases) assembled on 2006-10-13

> BS13143.3prime
ATGGTCTAGAAAGCTTTTACTGTTCCTCTTCGGGTACCTTTCTGGCGGGC
TTGTGCTTCTCGTAAGCCTCATCGTTGAGTCCCTCCCGATTCCGGGCAAT
CTCGATTGCCAGAAACTGGACGCGAAACACGAAGATAGAGTTGTCCGGGG
AGAATTCCCTGCTGGCATCGGCGCGCATCAGGGTGCCATACGAGTAATCG
TCCAACTTGTTAAACTTCTCGGCGAACTGGCGCCACTTGAGCTTCGCCGT
GGCGGATTTGAGAATATCATCGGTAAGCCGGCCAACGTGAAGATCGGGAA
AATCCTGCCGGAAAGTGGCGTATATCTGGTCGTCGTAGGGCGTGAGCTTC
AGCTGGGAGGGATGGACGCTGGTGATGAGATTAAAGTGCACCTCGGCGTG
TTCCAGAGCTTTTGCGGCCCACATTTCCTCCACCAGGGTGTCGTTGCCAA
ATTCCTCCGCTGGCCGCGACAGCAGCGACGCTCCATGCATCATCTCCATG
TCGACTGATAACT

BS13143.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7519-PA 483 CG7519-RA 1..483 499..17 2390 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7519-RA 710 CG7519-RA 103..585 499..17 2400 99.8 Minus
CG7519-RB 683 CG7519-RB 223..558 352..17 1665 99.7 Minus
CG7519-RB 683 CG7519-RB 103..224 499..378 610 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21493420..21493782 379..17 1800 99.7 Minus
3L 28110227 3L 21493247..21493355 488..380 545 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:23:16 has no hits.

BS13143.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:37 Download gff for BS13143.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7519-PA 1..483 17..499 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:51 Download gff for BS13143.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7519-RA 103..590 12..499 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:42 Download gff for BS13143.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7519-RA 103..590 12..499 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:42 Download gff for BS13143.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21493235..21493355 380..499 96 -> Minus
3L 21493420..21493787 12..379 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:51 Download gff for BS13143.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21486335..21486455 380..499 96 -> Minus
arm_3L 21486520..21486887 12..379 98   Minus

BS13143.5prime Sequence

513 bp (513 high quality bases) assembled on 2006-10-13

> BS13143.5prime
GAAGTTATCAGTCGACATGGAGATGATGCATGGAGCGTCGCTGCTGTCGC
GGCCAGCGGAGGAATTTGGCAACGACACCCTGGTGGAGGAAATGTGGGCC
GCAAAAGCTCTGGAACACGCCGAGGTGCACTTTAATCTCATCACCAGCGT
CCATCCCTCCCAGCTGAAGCTCACGCCCTACGACGACCAGATATACGCCA
CTTTCCGGCAGGATTTTCCCGATCTTCACGTTGGCCGGCTTACCGATGAT
ATTCTCAAATCCGCCACGGCGAAGCTCAAGTGGCGCCAGTTCGCCGAGAA
GTTTAACAAGTTGGACGATTACTCGTATGGCACCCTGATGCGCGCCGATG
CCAGCAGGGAATTCTCCCCGGACAACTCTATCTTCGTGTTTCGCGTCCAG
TTTCTGGCAATCGAGATTGCCCGGAATCGGGAGGGACTCAACGATGAGGC
TTACGAGAAGCACAAGCCCGCCAGAAAGGTACCCGAAGAGGAACAGTAAA
AGCTTTCTAGACC

BS13143.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7519-PA 483 CG7519-RA 1..483 17..499 2390 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7519-RA 710 CG7519-RA 103..585 17..499 2400 99.8 Plus
CG7519-RB 683 CG7519-RB 223..558 164..499 1665 99.7 Plus
CG7519-RB 683 CG7519-RB 103..224 17..138 610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21493420..21493782 137..499 1800 99.7 Plus
3L 28110227 3L 21493247..21493355 28..136 545 100 Plus
Blast to na_te.dros performed on 2015-01-30 18:08:40 has no hits.

BS13143.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:38 Download gff for BS13143.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7519-PA 1..483 17..499 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:32 Download gff for BS13143.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7519-RA 103..590 17..504 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:46 Download gff for BS13143.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7519-RA 103..590 17..504 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:46 Download gff for BS13143.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21493235..21493355 17..136 96 -> Plus
3L 21493420..21493787 137..504 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:32 Download gff for BS13143.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21486335..21486455 17..136 96 -> Plus
arm_3L 21486520..21486887 137..504 98   Plus

BS13143.complete Sequence

515 bp assembled on 2006-11-01

GenBank Submission: FJ637389

> BS13143.complete
GAAGTTATCAGTCGACATGGAGATGATGCATGGAGCGTCGCTGCTGTCGC
GGCCAGCGGAGGAATTTGGCAACGACACCCTGGTGGAGGAAATGTGGGCC
GCAAAAGCTCTGGAACACGCCGAGGTGCACTTTAATCTCATCACCAGCGT
CCATCCCTCCCAGCTGAAGCTCACGCCCTACGACGACCAGATATACGCCA
CTTTCCGGCAGGATTTTCCCGATCTTCACGTTGGCCGGCTTACCGATGAT
ATTCTCAAATCCGCCACGGCGAAGCTCAAGTGGCGCCAGTTCGCCGAGAA
GTTTAACAAGTTGGACGATTACTCGTATGGCACCCTGATGCGCGCCGATG
CCAGCAGGGAATTCTCCCCGGACAACTCTATCTTCGTGTTTCGCGTCCAG
TTTCTGGCAATCGAGATTGCCCGGAATCGGGAGGGACTCAACGATGAGGC
TTACGAGAAGCACAAGCCCGCCAGAAAGGTACCCGAAGAGGAACAGTAAA
AGCTTTCTAGACCAT

BS13143.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7519-RA 483 CG7519-PA 1..483 17..499 2400 99.8 Plus
CG7519-RB 456 CG7519-PB 121..456 164..499 1665 99.7 Plus
CG7519-RB 456 CG7519-PB 1..122 17..138 610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7519-RA 710 CG7519-RA 103..585 17..499 2400 99.8 Plus
CG7519-RB 683 CG7519-RB 223..558 164..499 1665 99.7 Plus
CG7519-RB 683 CG7519-RB 103..224 17..138 610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21493420..21493782 137..499 1800 99.7 Plus
3L 28110227 3L 21493247..21493355 28..136 545 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:24:19 has no hits.

BS13143.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:15 Download gff for BS13143.complete
Subject Subject Range Query Range Percent Splice Strand
CG7519-RA 1..483 17..499 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:09 Download gff for BS13143.complete
Subject Subject Range Query Range Percent Splice Strand
CG7519-RA 97..584 17..504 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:20 Download gff for BS13143.complete
Subject Subject Range Query Range Percent Splice Strand
CG7519-RA 103..583 17..497 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:16 Download gff for BS13143.complete
Subject Subject Range Query Range Percent Splice Strand
CG7519-RA 97..584 17..504 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:46 Download gff for BS13143.complete
Subject Subject Range Query Range Percent Splice Strand
CG7519-RA 103..583 17..497 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:46 Download gff for BS13143.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21493235..21493355 17..136 96 -> Plus
3L 21493420..21493780 137..497 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:20 Download gff for BS13143.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21486335..21486455 17..136 96 -> Plus
arm_3L 21486520..21486880 137..497 99   Plus

BS13143.pep Sequence

Translation from 16 to 498

> BS13143.pep
MEMMHGASLLSRPAEEFGNDTLVEEMWAAKALEHAEVHFNLITSVHPSQL
KLTPYDDQIYATFRQDFPDLHVGRLTDDILKSATAKLKWRQFAEKFNKLD
DYSYGTLMRADASREFSPDNSIFVFRVQFLAIEIARNREGLNDEAYEKHK
PARKVPEEEQ*

BS13143.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7519-PA 160 CG7519-PA 1..160 1..160 834 100 Plus
CG7519-PB 151 CG7519-PB 1..151 1..160 769 94.4 Plus