Clone Sequence Records
BS13143.3prime Sequence
513 bp (513 high quality bases) assembled on 2006-10-13
> BS13143.3prime
ATGGTCTAGAAAGCTTTTACTGTTCCTCTTCGGGTACCTTTCTGGCGGGC
TTGTGCTTCTCGTAAGCCTCATCGTTGAGTCCCTCCCGATTCCGGGCAAT
CTCGATTGCCAGAAACTGGACGCGAAACACGAAGATAGAGTTGTCCGGGG
AGAATTCCCTGCTGGCATCGGCGCGCATCAGGGTGCCATACGAGTAATCG
TCCAACTTGTTAAACTTCTCGGCGAACTGGCGCCACTTGAGCTTCGCCGT
GGCGGATTTGAGAATATCATCGGTAAGCCGGCCAACGTGAAGATCGGGAA
AATCCTGCCGGAAAGTGGCGTATATCTGGTCGTCGTAGGGCGTGAGCTTC
AGCTGGGAGGGATGGACGCTGGTGATGAGATTAAAGTGCACCTCGGCGTG
TTCCAGAGCTTTTGCGGCCCACATTTCCTCCACCAGGGTGTCGTTGCCAA
ATTCCTCCGCTGGCCGCGACAGCAGCGACGCTCCATGCATCATCTCCATG
TCGACTGATAACT
BS13143.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7519-PA | 483 | CG7519-RA | 1..483 | 499..17 | 2390 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:23:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7519-RA | 710 | CG7519-RA | 103..585 | 499..17 | 2400 | 99.8 | Minus |
CG7519-RB | 683 | CG7519-RB | 223..558 | 352..17 | 1665 | 99.7 | Minus |
CG7519-RB | 683 | CG7519-RB | 103..224 | 499..378 | 610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:23:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21493420..21493782 | 379..17 | 1800 | 99.7 | Minus |
3L | 28110227 | 3L | 21493247..21493355 | 488..380 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:23:16 has no hits.
BS13143.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:37 Download gff for
BS13143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-PA | 1..483 | 17..499 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:51 Download gff for
BS13143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-RA | 103..590 | 12..499 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:42 Download gff for
BS13143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-RA | 103..590 | 12..499 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:42 Download gff for
BS13143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21493235..21493355 | 380..499 | 96 | -> | Minus |
3L | 21493420..21493787 | 12..379 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:51 Download gff for
BS13143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21486335..21486455 | 380..499 | 96 | -> | Minus |
arm_3L | 21486520..21486887 | 12..379 | 98 | | Minus |
BS13143.5prime Sequence
513 bp (513 high quality bases) assembled on 2006-10-13
> BS13143.5prime
GAAGTTATCAGTCGACATGGAGATGATGCATGGAGCGTCGCTGCTGTCGC
GGCCAGCGGAGGAATTTGGCAACGACACCCTGGTGGAGGAAATGTGGGCC
GCAAAAGCTCTGGAACACGCCGAGGTGCACTTTAATCTCATCACCAGCGT
CCATCCCTCCCAGCTGAAGCTCACGCCCTACGACGACCAGATATACGCCA
CTTTCCGGCAGGATTTTCCCGATCTTCACGTTGGCCGGCTTACCGATGAT
ATTCTCAAATCCGCCACGGCGAAGCTCAAGTGGCGCCAGTTCGCCGAGAA
GTTTAACAAGTTGGACGATTACTCGTATGGCACCCTGATGCGCGCCGATG
CCAGCAGGGAATTCTCCCCGGACAACTCTATCTTCGTGTTTCGCGTCCAG
TTTCTGGCAATCGAGATTGCCCGGAATCGGGAGGGACTCAACGATGAGGC
TTACGAGAAGCACAAGCCCGCCAGAAAGGTACCCGAAGAGGAACAGTAAA
AGCTTTCTAGACC
BS13143.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7519-PA | 483 | CG7519-RA | 1..483 | 17..499 | 2390 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7519-RA | 710 | CG7519-RA | 103..585 | 17..499 | 2400 | 99.8 | Plus |
CG7519-RB | 683 | CG7519-RB | 223..558 | 164..499 | 1665 | 99.7 | Plus |
CG7519-RB | 683 | CG7519-RB | 103..224 | 17..138 | 610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:08:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21493420..21493782 | 137..499 | 1800 | 99.7 | Plus |
3L | 28110227 | 3L | 21493247..21493355 | 28..136 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:08:40 has no hits.
BS13143.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:38 Download gff for
BS13143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-PA | 1..483 | 17..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:32 Download gff for
BS13143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-RA | 103..590 | 17..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:46 Download gff for
BS13143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-RA | 103..590 | 17..504 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:46 Download gff for
BS13143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21493235..21493355 | 17..136 | 96 | -> | Plus |
3L | 21493420..21493787 | 137..504 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:32 Download gff for
BS13143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21486335..21486455 | 17..136 | 96 | -> | Plus |
arm_3L | 21486520..21486887 | 137..504 | 98 | | Plus |
BS13143.complete Sequence
515 bp assembled on 2006-11-01
GenBank Submission: FJ637389
> BS13143.complete
GAAGTTATCAGTCGACATGGAGATGATGCATGGAGCGTCGCTGCTGTCGC
GGCCAGCGGAGGAATTTGGCAACGACACCCTGGTGGAGGAAATGTGGGCC
GCAAAAGCTCTGGAACACGCCGAGGTGCACTTTAATCTCATCACCAGCGT
CCATCCCTCCCAGCTGAAGCTCACGCCCTACGACGACCAGATATACGCCA
CTTTCCGGCAGGATTTTCCCGATCTTCACGTTGGCCGGCTTACCGATGAT
ATTCTCAAATCCGCCACGGCGAAGCTCAAGTGGCGCCAGTTCGCCGAGAA
GTTTAACAAGTTGGACGATTACTCGTATGGCACCCTGATGCGCGCCGATG
CCAGCAGGGAATTCTCCCCGGACAACTCTATCTTCGTGTTTCGCGTCCAG
TTTCTGGCAATCGAGATTGCCCGGAATCGGGAGGGACTCAACGATGAGGC
TTACGAGAAGCACAAGCCCGCCAGAAAGGTACCCGAAGAGGAACAGTAAA
AGCTTTCTAGACCAT
BS13143.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7519-RA | 483 | CG7519-PA | 1..483 | 17..499 | 2400 | 99.8 | Plus |
CG7519-RB | 456 | CG7519-PB | 121..456 | 164..499 | 1665 | 99.7 | Plus |
CG7519-RB | 456 | CG7519-PB | 1..122 | 17..138 | 610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7519-RA | 710 | CG7519-RA | 103..585 | 17..499 | 2400 | 99.8 | Plus |
CG7519-RB | 683 | CG7519-RB | 223..558 | 164..499 | 1665 | 99.7 | Plus |
CG7519-RB | 683 | CG7519-RB | 103..224 | 17..138 | 610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21493420..21493782 | 137..499 | 1800 | 99.7 | Plus |
3L | 28110227 | 3L | 21493247..21493355 | 28..136 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:24:19 has no hits.
BS13143.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:15 Download gff for
BS13143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-RA | 1..483 | 17..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:09 Download gff for
BS13143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-RA | 97..584 | 17..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:20 Download gff for
BS13143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-RA | 103..583 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:16 Download gff for
BS13143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-RA | 97..584 | 17..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:46 Download gff for
BS13143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7519-RA | 103..583 | 17..497 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:46 Download gff for
BS13143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21493235..21493355 | 17..136 | 96 | -> | Plus |
3L | 21493420..21493780 | 137..497 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:20 Download gff for
BS13143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21486335..21486455 | 17..136 | 96 | -> | Plus |
arm_3L | 21486520..21486880 | 137..497 | 99 | | Plus |
BS13143.pep Sequence
Translation from 16 to 498
> BS13143.pep
MEMMHGASLLSRPAEEFGNDTLVEEMWAAKALEHAEVHFNLITSVHPSQL
KLTPYDDQIYATFRQDFPDLHVGRLTDDILKSATAKLKWRQFAEKFNKLD
DYSYGTLMRADASREFSPDNSIFVFRVQFLAIEIARNREGLNDEAYEKHK
PARKVPEEEQ*
BS13143.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7519-PA | 160 | CG7519-PA | 1..160 | 1..160 | 834 | 100 | Plus |
CG7519-PB | 151 | CG7519-PB | 1..151 | 1..160 | 769 | 94.4 | Plus |