Clone Sequence Records
BS13147.3prime Sequence
874 bp (682 high quality bases) assembled on 2006-10-13
> BS13147.3prime
ATGGTCTAGAAAGCTTTCATTTTTGCTGCAAGCCAAGCAGCAGTTCTTTT
TGTCTTATTATTGTGGGATCTGCAACAATCAGCCGAGCAAAGTCCATAAC
CTCTTTACCATAAGTAGCAGAGAAAAACAACATTTGGCAATGTGGATTCA
GCATTTTGTGTATTCGAATGCATTGATCATGATGACCTTGGGTGGCTATC
ATTACATCTGCTTCATCCAATACAAAAACGGATATTTTCTTCATATCAAA
TAAACGAAATTTTATTCCCCAATCCAAAAGTTTTCCTGGGGTGCCAATCA
AAATGTGTTCTTCAATTTTTTTACTGCGATCAACCTCTTCTCCGCGTACT
GCAAATCTTAGCTTTATTTCCCGACAAAATTGTCCCATTCGCGCAGCCAC
TTCTCCAGTTTGAATTGCCAACTCGTACGTAGGGGATAAACACAGAACCT
GAGGATGATTTAAACAAACGTTGACTCGGCTAAGCATGGCCAATACAAAT
GCGGCTGTTTTGCCTGTCCCAGACTGGCTTTGTGCTATCATATTTTGCGG
TGGATCTGCGAGAAGAGTTGGCAACGCTGTTTCTTGAATTTTTGATGGAG
TATTAAACCCCATTGCGTAAATTCCCTTTAACAGAGATGCTTTTAGGTGT
AAGGCTTCAAATGTTTTCACGGAATGTAAGGGTGAATTCGGATTTTTTTG
TTGAATGTCGAGAGATAGCTTTTGTGTTCCCCAGCCCCTTTCCTAGTATT
TTTATGAGGAGACTTGTTTCAGCTGGATCAGCGACGTCGAAATCGGTTTC
TTCTCCAGATTTAGAGTCCAGGGTAAGTTTGTCGACCAGCTTAAAAAACC
TCCGGGTCCTCTGCTTTTTTAGCC
BS13147.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:35:30 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp80-RG | 1564 | CG17023-RG | 71..890 | 874..53 | 3985 | 99.1 | Minus |
| Dbp80-RE | 1505 | CG17023-RE | 71..890 | 874..53 | 3985 | 99.1 | Minus |
| Dbp80-RD | 1203 | CG17023-RD | 71..890 | 874..53 | 3985 | 99.1 | Minus |
| Dbp80-RG | 1564 | CG17023-RG | 1134..1172 | 55..17 | 195 | 100 | Minus |
| Dbp80-RE | 1505 | CG17023-RE | 1026..1062 | 53..17 | 185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 27293076..27293273 | 644..447 | 990 | 100 | Minus |
| 3L | 28110227 | 3L | 27332168..27332346 | 334..156 | 895 | 100 | Minus |
| 3L | 28110227 | 3L | 27292882..27293013 | 777..645 | 600 | 98.5 | Minus |
| 3L | 28110227 | 3L | 27331992..27332108 | 450..334 | 585 | 100 | Minus |
| 3L | 28110227 | 3L | 27350220..27350321 | 155..54 | 510 | 100 | Minus |
| 3L | 28110227 | 3L | 27279480..27279539 | 837..778 | 270 | 96.7 | Minus |
| 3L | 28110227 | 3L | 27420677..27420715 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed 2015-01-30 18:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 1326..1385 | 254..195 | 111 | 65 | Minus |
BS13147.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:36 Download gff for
BS13147.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp80-RE | 71..890 | 52..874 | 99 | <- | Minus |
| Dbp80-RE | 1028..1062 | 17..51 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:49 Download gff for
BS13147.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp80-RD | 71..890 | 53..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:49 Download gff for
BS13147.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 27293076..27293271 | 449..644 | 100 | -> | Minus |
| 3L | 27331994..27332108 | 334..448 | 100 | -> | Minus |
| 3L | 27332169..27332346 | 156..333 | 100 | -> | Minus |
| 3L | 27350220..27350321 | 54..155 | 100 | -> | Minus |
| 3L | 27420679..27420715 | 17..53 | 100 | | Minus |
| 3L | 27279481..27279539 | 778..836 | 96 | -> | Minus |
| 3L | 27292882..27293013 | 645..777 | 98 | -> | Minus |
| 3L | 27279386..27279422 | 837..874 | 92 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:36 Download gff for
BS13147.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 2473205..2473306 | 54..155 | 100 | -> | Minus |
| 3LHet | 2543666..2543702 | 17..53 | 100 | | Minus |
| 3LHet | 2454979..2455093 | 334..448 | 100 | -> | Minus |
| 3LHet | 2455154..2455331 | 156..333 | 100 | -> | Minus |
| 3LHet | 2409922..2409958 | 837..874 | 92 | -> | Minus |
| 3LHet | 2410017..2410075 | 778..836 | 96 | -> | Minus |
| 3LHet | 2423418..2423549 | 645..777 | 98 | -> | Minus |
| 3LHet | 2423612..2423807 | 449..644 | 100 | -> | Minus |
BS13147.5prime Sequence
711 bp (678 high quality bases) assembled on 2006-10-13
> BS13147.5prime
GAAGTTATCAGTCGACATGGGTGATTGGGCTAAAAAAGCAGAGGACCAGG
AGGTTTCTAAGCTGGTCGACAAACTTAACCTAGACTCTAAATCTGGAGAA
GAAACCGATTTCGACGTCGCTGATCCAGCTGAAACAAGTCTCCTCATAAA
AATACTAGGAAAGGGGCTGGTGAACACAAAGCTATCTCTCGACATTCAAC
AAAAAAATCCGAATTCACCCTTACATTCCGTGAAAACATTTGAAGCCTTA
CACCTAAAAGCATCTCTGTTAAAGGGAATTTACGCAATGGGGTTTAATAC
TCCATCAAAAATTCAAGAAACAGCGTTGCCAACTCTTCTCGCAGATCCAC
CGCAAAATATGATAGCACAAAGCCAGTCTGGGACAGGCAAAACAGCCGCA
TTTGTATTGGCCATGCTTAGCCGAGTCAACGTTTGTTTAAATCATCCTCA
GGTTCTGTGTTTATCCCCTACGTACGAGTTGGCAATTCAAACTGGAGAAG
TGGCTGCGCGAATGGGACAATTTTGTCGGGAAATAAAGCTAAGATTTGCA
GTACGCGGAGAAGAGGTTGATCGCAGTAAAAAAATTGAAGAACACATTTT
GATTGGCACCCCAGGGAAACTTTTGGATTGGGGAAAAAAATTTCGTTTAT
TTGATATGAAGAAAATATCCGTTTTTGTATTGGATGAAGCAGATGTAATG
AAAGCCACCCA
BS13147.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:35:31 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp80-RG | 1564 | CG17023-RG | 58..754 | 15..711 | 3440 | 99.6 | Plus |
| Dbp80-RE | 1505 | CG17023-RE | 58..754 | 15..711 | 3440 | 99.6 | Plus |
| Dbp80-RD | 1203 | CG17023-RD | 58..754 | 15..711 | 3440 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 27293076..27293273 | 256..453 | 990 | 100 | Plus |
| 3L | 28110227 | 3L | 27332168..27332313 | 566..711 | 685 | 97.9 | Plus |
| 3L | 28110227 | 3L | 27292882..27293013 | 124..255 | 660 | 100 | Plus |
| 3L | 28110227 | 3L | 27331992..27332108 | 450..566 | 585 | 100 | Plus |
| 3L | 28110227 | 3L | 27279480..27279539 | 64..123 | 300 | 100 | Plus |
| 3L | 28110227 | 3L | 27279373..27279424 | 15..66 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:15:48 has no hits.
BS13147.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:05:00 Download gff for
BS13147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp80-RE | 58..753 | 15..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:33:54 Download gff for
BS13147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp80-RD | 58..753 | 15..710 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:33:54 Download gff for
BS13147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 27331994..27332108 | 452..566 | 100 | -> | Plus |
| 3L | 27332169..27332312 | 567..710 | 97 | | Plus |
| 3L | 27279373..27279422 | 15..64 | 100 | -> | Plus |
| 3L | 27279481..27279539 | 65..123 | 100 | -> | Plus |
| 3L | 27292882..27293013 | 124..255 | 100 | -> | Plus |
| 3L | 27293076..27293271 | 256..451 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:05:00 Download gff for
BS13147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 2423418..2423549 | 124..255 | 100 | -> | Plus |
| 3LHet | 2423612..2423807 | 256..451 | 100 | -> | Plus |
| 3LHet | 2454979..2455093 | 452..566 | 100 | -> | Plus |
| 3LHet | 2455154..2455297 | 567..710 | 97 | | Plus |
| 3LHet | 2409909..2409958 | 15..64 | 100 | -> | Plus |
| 3LHet | 2410017..2410075 | 65..123 | 100 | -> | Plus |
BS13147.complete Sequence
899 bp assembled on 2006-11-01
GenBank Submission: FJ637390
> BS13147.complete
GAAGTTATCAGTCGACATGGGTGATTGGGCTAAAAAAGCAGAGGACCAGG
AGGTTTCTAAGCTGGTCGACAAACTTAACCTAGACTCTAAATCTGGAGAA
GAAACCGATTTCGACGTCGCTGATCCAGCTGAAACAAGTCTCCTCATAAA
AATACTAGGAAAGGGGCTGGTGAACACAAAGCTATCTCTCGACATTCAAC
AAAAAAATCCGAATTCACCCTTACATTCCGTGAAAACATTTGAAGCCTTA
CACCTAAAAGCATCTCTGTTAAAGGGAATTTACGCAATGGGGTTTAATAC
TCCATCAAAAATTCAAGAAACAGCGTTGCCAACTCTTCTCGCAGATCCAC
CGCAAAATATGATAGCACAAAGCCAGTCTGGGACAGGCAAAACAGCCGCA
TTTGTATTGGCCATGCTTAGCCGAGTCAACGTTTGTTTAAATCATCCTCA
GGTTCTGTGTTTATCCCCTACGTACGAGTTGGCAATTCAAACTGGAGAAG
TGGCTGCGCGAATGGGACAATTTTGTCGGGAAATAAAGCTAAGATTTGCA
GTACGCGGAGAAGAGGTTGATCGCAGTAAAAAAATTGAAGAACACATTTT
GATTGGCACCCCAGGAAAACTTTTGGATTGGGGAATAAAATTTCGTTTAT
TTGATATGAAGAAAATATCCGTTTTTGTATTGGATGAAGCAGATGTAATG
ATAGCCACCCAAGGTCATCATGATCAATGCATTCGAATACACAAAATGCT
GAATCCACATTGCCAAATGTTGTTTTTCTCTGCTACTTATGGTAAAGAGG
TTATGGACTTTGCTCGGCTGATTGTTGCAGATCCCACAATAATAAGACAA
AAAGAACTGCTGCTTGGCTTGCAGCAAAAATGAAAGCTTTCTAGACCAT
BS13147.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp80-RG | 1065 | CG17023-PG | 1..831 | 17..847 | 4155 | 100 | Plus |
| Dbp80-RE | 1446 | CG17023-PE | 1..831 | 17..847 | 4155 | 100 | Plus |
| Dbp80-RD | 840 | CG17023-PD | 1..831 | 17..847 | 4155 | 100 | Plus |
| Dbp80-RE | 1446 | CG17023-PE | 967..1003 | 847..883 | 185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:18:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp80-RG | 1564 | CG17023-RG | 58..890 | 15..847 | 4165 | 100 | Plus |
| Dbp80-RE | 1505 | CG17023-RE | 58..890 | 15..847 | 4165 | 100 | Plus |
| Dbp80-RD | 1203 | CG17023-RD | 58..890 | 15..847 | 4165 | 100 | Plus |
| Dbp80-RG | 1564 | CG17023-RG | 1134..1172 | 845..883 | 195 | 100 | Plus |
| Dbp80-RE | 1505 | CG17023-RE | 1026..1062 | 847..883 | 185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 27293076..27293273 | 256..453 | 990 | 100 | Plus |
| 3L | 28110227 | 3L | 27332168..27332346 | 566..744 | 895 | 100 | Plus |
| 3L | 28110227 | 3L | 27292882..27293013 | 124..255 | 660 | 100 | Plus |
| 3L | 28110227 | 3L | 27331992..27332108 | 450..566 | 585 | 100 | Plus |
| 3L | 28110227 | 3L | 27350220..27350321 | 745..846 | 510 | 100 | Plus |
| 3L | 28110227 | 3L | 27279480..27279539 | 64..123 | 300 | 100 | Plus |
| 3L | 28110227 | 3L | 27279373..27279424 | 15..66 | 260 | 100 | Plus |
| 3L | 28110227 | 3L | 27420677..27420715 | 845..883 | 195 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:18:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 1326..1385 | 646..705 | 111 | 65 | Plus |
BS13147.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:17 Download gff for
BS13147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp80-RA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:59 Download gff for
BS13147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp80-RA | 70..928 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:33 Download gff for
BS13147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp80-RE | 60..890 | 17..848 | 99 | <- | Plus |
| Dbp80-RE | 1028..1054 | 849..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:17 Download gff for
BS13147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp80-RA | 68..936 | 15..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:15:02 Download gff for
BS13147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp80-RD | 60..890 | 17..847 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:15:02 Download gff for
BS13147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 27279375..27279422 | 17..64 | 100 | -> | Plus |
| 3L | 27279481..27279539 | 65..123 | 100 | -> | Plus |
| 3L | 27292882..27293013 | 124..255 | 100 | -> | Plus |
| 3L | 27293076..27293271 | 256..451 | 100 | -> | Plus |
| 3L | 27331994..27332108 | 452..566 | 100 | -> | Plus |
| 3L | 27332169..27332346 | 567..744 | 100 | -> | Plus |
| 3L | 27350220..27350321 | 745..846 | 100 | -> | Plus |
| 3L | 27420679..27420707 | 847..875 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:33 Download gff for
BS13147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 2455154..2455331 | 567..744 | 100 | -> | Plus |
| 3LHet | 2473205..2473306 | 745..846 | 100 | -> | Plus |
| 3LHet | 2543666..2543694 | 847..875 | 100 | | Plus |
| 3LHet | 2409911..2409958 | 17..64 | 100 | -> | Plus |
| 3LHet | 2410017..2410075 | 65..123 | 100 | -> | Plus |
| 3LHet | 2423418..2423549 | 124..255 | 100 | -> | Plus |
| 3LHet | 2423612..2423807 | 256..451 | 100 | -> | Plus |
| 3LHet | 2454979..2455093 | 452..566 | 100 | -> | Plus |
BS13147.pep Sequence
Translation from 16 to 882
> BS13147.pep
MGDWAKKAEDQEVSKLVDKLNLDSKSGEETDFDVADPAETSLLIKILGKG
LVNTKLSLDIQQKNPNSPLHSVKTFEALHLKASLLKGIYAMGFNTPSKIQ
ETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVNVCLNHPQVLCLS
PTYELAIQTGEVAARMGQFCREIKLRFAVRGEEVDRSKKIEEHILIGTPG
KLLDWGIKFRLFDMKKISVFVLDEADVMIATQGHHDQCIRIHKMLNPHCQ
MLFFSATYGKEVMDFARLIVADPTIIRQKELLLGLQQK*
BS13147.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp80-PG | 354 | CG17023-PG | 1..290 | 1..287 | 1420 | 96.6 | Plus |
| Dbp80-PB | 447 | CG17023-PB | 1..290 | 1..287 | 1420 | 96.6 | Plus |
| Dbp80-PE | 481 | CG17023-PE | 1..290 | 1..287 | 1420 | 96.6 | Plus |
| Dbp80-PD | 279 | CG17023-PD | 1..277 | 1..277 | 1419 | 100 | Plus |
| Dbp80-PF | 316 | CG17023-PF | 1..125 | 166..287 | 589 | 92 | Plus |
