Clone Sequence Records
BS13150.3prime Sequence
738 bp (693 high quality bases) assembled on 2006-10-13
> BS13150.3prime
ATGGTCTAGAAAGCTTCTACTTTCGCTCCATGGGCTTGACTTCCAGCAAT
TGAGGATAGTTCTCCACGATGTTGAGTAGAATGGTATCAATATAGTGCTT
AAGCCGAACATTTTCATCCTCCTTTTCCTGGAAGGCCTGTTGTAGCTGGG
CTTGTGACATCTCCTCGAGCTCCTGAGCCAAACTGTTGAGTGTTCCGTTC
AGCAGATGGCGACCCTGCTCCACGCCATTTGTCAGCATGGTGGCCTGGTT
GGTCAGCATCGTGGCCTGCAGCTCCTCGTTCTGTTCTTCGAGGGTTCGGT
TCTTCTGGCGCATCTCCTCGAGCTCCTGATGCAGCTCCTCCAGTCTTATG
CTCTCCGGCGATGTGGTCGGCATTGCCCGGGCTCCACTCTCCTCGCGAGC
ACGCTGCAGTTCCCGGCCCAGCTCCAGCATCAGCTCCTCGGTGGACTTCT
TCTCCTGTTCGTGGCGGCGCAGTGCCTGTGCCTGCTCCTCGTGCTCCTGT
TGCAGGACGCCGATTTGGTCGCGCGCCAGCTCCAACTGTTCCTCGGTGCG
ATGGAGGTCATTGGCCTGCTTGTCACACAGGACACGCAGTCGGGCGGCTT
CTTCCCGCAGTGCCGTTGCCTCGATCTCGGTGGCACGGATCTTCATCTGG
CAGTTCTCGTTCTGCAGCGAGGCTTCACGCTCCACGCGGGCCAAAATCTC
GCGGTGCCGCTTCTGCTCCTCTGCCAAACGCTCCTCGG
BS13150.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33991-PC | 1509 | nuf-RC | 788..1509 | 738..17 | 3610 | 100 | Minus |
CG33991-PA | 1509 | nuf-RA | 788..1509 | 738..17 | 3610 | 100 | Minus |
CG33991-PD | 951 | nuf-RD | 230..951 | 738..17 | 3610 | 100 | Minus |
CG33991-PB | 918 | nuf-RB | 197..918 | 738..17 | 3610 | 100 | Minus |
CG33991-PE | 1587 | nuf-RE | 866..1587 | 738..17 | 3610 | 100 | Minus |
CG33991-PF | 1587 | nuf-RF | 866..1587 | 738..17 | 3610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:14:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-RF | 3099 | CG33991-RF | 1183..1904 | 738..17 | 3610 | 100 | Minus |
nuf-RE | 3233 | CG33991-RE | 1317..2038 | 738..17 | 3610 | 100 | Minus |
nuf-RB | 2373 | CG33991-RB | 457..1178 | 738..17 | 3610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14230669..14231112 | 738..295 | 2220 | 100 | Minus |
3L | 28110227 | 3L | 14231177..14231325 | 294..146 | 745 | 100 | Minus |
3L | 28110227 | 3L | 14231924..14232055 | 148..17 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:14:36 has no hits.
BS13150.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:43 Download gff for
BS13150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33991-PF | 866..1587 | 17..738 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:35:06 Download gff for
BS13150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RB | 457..1187 | 7..738 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:15 Download gff for
BS13150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RB | 457..1187 | 7..738 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:15 Download gff for
BS13150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14230669..14231112 | 295..738 | 100 | -> | Minus |
3L | 14231177..14231325 | 146..294 | 100 | -> | Minus |
3L | 14231927..14232064 | 7..145 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:35:06 Download gff for
BS13150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14223769..14224212 | 295..738 | 100 | -> | Minus |
arm_3L | 14224277..14224425 | 146..294 | 100 | -> | Minus |
arm_3L | 14225027..14225164 | 7..145 | 97 | | Minus |
BS13150.5prime Sequence
802 bp (745 high quality bases) assembled on 2006-10-13
> BS13150.5prime
GAAGTTATCAGTCGACATGGCACCAATGCCCCGAATTCAGTTACCCAATG
GAAATTCTTCCATAAAGGCTAGCACAAATGATTTTCTCTTTGCGGAAACA
ATGTCCGGCGGCAGTAGTCCCACCCCCAGCAGTCCGCCATCCAGTACAGC
AGGCGTTGCCAAATCTCAGTGTTCTTCCCTTTCGGATGGCGAATCCTTTG
AGGGATATGGCGAAAATGAGTATCCCACCCAACTTCGCGAAGCCCGCAGC
TCCAATTCCAATGGGAGCCATAATATGAGCAATCATATTAACAATAATTC
TAATATCAGCGTGGGCAACAACAGTGGACACAACCACAGTGGACACTCGA
ACGATGGAAATAACAACCTAAATGGCAGCACTGGCGTCGAACTCGATTTG
GCTCCACACGTCGGCTCATCAACACCTCAAGATGATGACGAACTAAACAT
AATGCCCCGGGATAATTGGGCCAGGCGCAGTCTGCGACGAACTCCCACCA
GTTCCGGCCGCAGGCAAATTAGTTCAAATGCCTTAGCCAGCCAACTCTAT
AGATCATCGAGCTTTAACTCATCGGGCCGTAGCTCCAACTGTGATACAAC
AGAAGACATGTACAGCGACATAAGCTTGGAGAATCGTCATGACTACGATT
ATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCAGATACACAG
AATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATATGCAGTCCT
TCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGTCGGAACTGC
GT
BS13150.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:31:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33991-PC | 1509 | nuf-RC | 1..786 | 17..802 | 3905 | 99.8 | Plus |
CG33991-PA | 1509 | nuf-RA | 1..786 | 17..802 | 3905 | 99.8 | Plus |
CG33991-PB | 918 | nuf-RB | 1..195 | 608..802 | 975 | 100 | Plus |
CG33991-PD | 951 | nuf-RD | 82..228 | 656..802 | 735 | 100 | Plus |
CG33991-PE | 1587 | nuf-RE | 718..864 | 656..802 | 735 | 100 | Plus |
CG33991-PF | 1587 | nuf-RF | 718..864 | 656..802 | 735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-RL | 2735 | CG33991-RL | 741..1528 | 15..802 | 3925 | 99.9 | Plus |
nuf-RA | 2696 | CG33991-RA | 741..1528 | 15..802 | 3925 | 99.9 | Plus |
nuf-RC | 3446 | CG33991-RC | 741..1528 | 15..802 | 3925 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14200162..14200447 | 147..432 | 1430 | 100 | Plus |
3L | 28110227 | 3L | 14230175..14230310 | 655..790 | 680 | 100 | Plus |
3L | 28110227 | 3L | 14199966..14200100 | 15..149 | 660 | 99.3 | Plus |
3L | 28110227 | 3L | 14213087..14213203 | 539..655 | 585 | 100 | Plus |
3L | 28110227 | 3L | 14200739..14200807 | 433..501 | 345 | 100 | Plus |
3L | 28110227 | 3L | 14212191..14212232 | 499..540 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:10:05 has no hits.
BS13150.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:43 Download gff for
BS13150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33991-PA | 1..786 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:34:12 Download gff for
BS13150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 735..1528 | 9..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:28:06 Download gff for
BS13150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 735..1528 | 9..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:28:06 Download gff for
BS13150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14200165..14200447 | 150..432 | 100 | -> | Plus |
3L | 14200739..14200807 | 433..501 | 100 | -> | Plus |
3L | 14212194..14212232 | 502..540 | 100 | -> | Plus |
3L | 14213089..14213203 | 541..655 | 100 | -> | Plus |
3L | 14230176..14230310 | 656..790 | 100 | -> | Plus |
3L | 14199960..14200100 | 9..149 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:34:12 Download gff for
BS13150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14193060..14193200 | 9..149 | 96 | -> | Plus |
arm_3L | 14193265..14193547 | 150..432 | 100 | -> | Plus |
arm_3L | 14193839..14193907 | 433..501 | 100 | -> | Plus |
arm_3L | 14205294..14205332 | 502..540 | 100 | -> | Plus |
arm_3L | 14206189..14206303 | 541..655 | 100 | -> | Plus |
arm_3L | 14223276..14223410 | 656..790 | 100 | -> | Plus |
BS13150.complete Sequence
1541 bp assembled on 2007-10-31
GenBank Submission: KX801646
> BS13150.complete
GAAGTTATCAGTCGACATGGCACCAATGCCCCGAATTCAGTTACCCAATG
GAAATTCTTCCATAAAGGCTAGCACAAATGATTTTCTCTTTGCGGAAACA
ATGTCCGGCGGCAGTAGTCCCACCCCCAGCAGTCCGCCATCCAGTACAGC
AGGCGTTGCCAAATCTCAGTGTTCTTCCCTTTCGGATGGCGAATCCTTTG
AGGGATATGGCGAAAATGAGTATCCCACCCAACTTCGCGAAGCCCGCAGC
TCCAATTCCAATGGGAGCCATAATATGAGCAATCATATTAACAATAATTC
TAATATCAGCGTGGGCAACAACAGTGGACACAACCACAGTGGACACTCGA
ACGATGGAAATAACAACCTAAATGGCAGCACTGGCGTCGAACTCGATTTG
GCTCCACACGTCGGCTCATCAACACCTCAAGATGATGACGAACTAAACAT
AATGCCCCGGGATAATTGGGCCAGGCGCAGTCTGCGACGAACTCCCACCA
GTTCCGGCCGCAGGCAAATTAGTTCAAATGCCTTAGCCAGCCAACTCTAT
AGATCATCGAGCTTTAACTCATCGGGCCGTAGCTCCAACTGTGATACAAC
AGAAGACATGTACAGCGACATAAGCTTGGAGAATCGTCATGACTACGATT
ATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCAGATACACAG
AATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATATGCAGTCCT
TCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGTCGGAACTGC
GTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGCGAGATTTTG
GCCCGCGTGGAGCGTGAAGCCTCGCTGCAGAACGAGAACTGCCAGATGAA
GATCCGTGCCACCGAGATCGAGGCAACGGCACTGCGGGAAGAAGCCGCCC
GACTGCGTGTCCTGTGTGACAAGCAGGCCAATGACCTCCATCGCACCGAG
GAACAGTTGGAGCTGGCGCGCGACCAAATCGGCGTCCTGCAACAGGAGCA
CGAGGAGCAGGCACAGGCACTGCGCCGCCACGAACAGGAGAAGAAGTCCA
CCGAGGAGCTGATGCTGGAGCTGGGCCGGGAACTGCAGCGTGCTCGCGAG
GAGAGTGGAGCCCGGGCAATGCCGACCACATCGCCGGAGAGCATAAGACT
GGAGGAGCTGCATCAGGAGCTCGAGGAGATGCGCCAGAAGAACCGAACCC
TCGAAGAACAGAACGAGGAGCTGCAGGCCACGATGCTGACCAACCAGGCC
ACCATGCTGACAAATGGCGTGGAGCAGGGTCGCCATCTGCTGAACGGAAC
ACTCAACAGTTTGGCTCAGGAGCTCGAGGAGATGTCACAAGCCCAGCTAC
AACAGGCCTTCCAGGAAAAGGAGGATGAAAATGTTCGGCTTAAGCACTAT
ATTGATACCATTCTACTCAACATCGTGGAGAACTATCCTCAATTGCTGGA
AGTCAAGCCCATGGAGCGAAAGTAGAAGCTTTCTAGACCAT
BS13150.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:07:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-RA | 1509 | CG33991-PA | 1..1509 | 17..1525 | 7530 | 99.9 | Plus |
nuf-RC | 1509 | CG33991-PC | 1..1509 | 17..1525 | 7530 | 99.9 | Plus |
nuf-RL | 1548 | CG33991-PL | 1..1380 | 17..1396 | 6885 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-RA | 2696 | CG33991-RA | 741..2251 | 15..1525 | 7540 | 99.9 | Plus |
nuf-RC | 3446 | CG33991-RC | 741..2251 | 15..1525 | 7540 | 99.9 | Plus |
nuf-RL | 2735 | CG33991-RL | 741..2122 | 15..1396 | 6895 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14230654..14231112 | 789..1247 | 2295 | 100 | Plus |
3L | 28110227 | 3L | 14200162..14200447 | 147..432 | 1430 | 100 | Plus |
3L | 28110227 | 3L | 14231177..14231325 | 1248..1396 | 745 | 100 | Plus |
3L | 28110227 | 3L | 14230175..14230310 | 655..790 | 680 | 100 | Plus |
3L | 28110227 | 3L | 14199966..14200100 | 15..149 | 660 | 99.3 | Plus |
3L | 28110227 | 3L | 14231924..14232055 | 1394..1525 | 660 | 100 | Plus |
3L | 28110227 | 3L | 14213087..14213203 | 539..655 | 585 | 100 | Plus |
3L | 28110227 | 3L | 14200739..14200807 | 433..501 | 345 | 100 | Plus |
3L | 28110227 | 3L | 14212191..14212232 | 499..540 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:07:03 has no hits.
BS13150.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:37 Download gff for
BS13150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RA | 1..1509 | 17..1525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:35:40 Download gff for
BS13150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RA | 739..2247 | 17..1525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:05 Download gff for
BS13150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 743..2251 | 17..1525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:44 Download gff for
BS13150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RA | 739..2247 | 17..1525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:40 Download gff for
BS13150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 743..2251 | 17..1525 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:40 Download gff for
BS13150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14200165..14200447 | 150..432 | 100 | -> | Plus |
3L | 14200739..14200807 | 433..501 | 100 | -> | Plus |
3L | 14212194..14212232 | 502..540 | 100 | -> | Plus |
3L | 14213089..14213203 | 541..655 | 100 | -> | Plus |
3L | 14230176..14230310 | 656..790 | 100 | -> | Plus |
3L | 14199968..14200100 | 17..149 | 99 | -> | Plus |
3L | 14230656..14231112 | 791..1247 | 100 | -> | Plus |
3L | 14231177..14231325 | 1248..1396 | 100 | -> | Plus |
3L | 14231927..14232055 | 1397..1525 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:05 Download gff for
BS13150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14193068..14193200 | 17..149 | 99 | -> | Plus |
arm_3L | 14193265..14193547 | 150..432 | 100 | -> | Plus |
arm_3L | 14193839..14193907 | 433..501 | 100 | -> | Plus |
arm_3L | 14205294..14205332 | 502..540 | 100 | -> | Plus |
arm_3L | 14206189..14206303 | 541..655 | 100 | -> | Plus |
arm_3L | 14223276..14223410 | 656..790 | 100 | -> | Plus |
arm_3L | 14223756..14224212 | 791..1247 | 100 | -> | Plus |
arm_3L | 14224277..14224425 | 1248..1396 | 100 | -> | Plus |
arm_3L | 14225027..14225155 | 1397..1525 | 100 | | Plus |
BS13150.pep Sequence
Translation from 16 to 1524
> BS13150.pep
MAPMPRIQLPNGNSSIKASTNDFLFAETMSGGSSPTPSSPPSSTAGVAKS
QCSSLSDGESFEGYGENEYPTQLREARSSNSNGSHNMSNHINNNSNISVG
NNSGHNHSGHSNDGNNNLNGSTGVELDLAPHVGSSTPQDDDELNIMPRDN
WARRSLRRTPTSSGRRQISSNALASQLYRSSSFNSSGRSSNCDTTEDMYS
DISLENRHDYDYRLELLQRKVDDLSDTQNIAEDRTTRTKTEYAVLQARYH
MLEEQYRESELRAEERLAEEQKRHREILARVEREASLQNENCQMKIRATE
IEATALREEAARLRVLCDKQANDLHRTEEQLELARDQIGVLQQEHEEQAQ
ALRRHEQEKKSTEELMLELGRELQRAREESGARAMPTTSPESIRLEELHQ
ELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVEQGRHLLNGTLNSLA
QELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNIVENYPQLLEVKPME
RK*
BS13150.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-PA | 502 | CG33991-PA | 1..502 | 1..502 | 2546 | 99.8 | Plus |
nuf-PC | 502 | CG33991-PC | 1..502 | 1..502 | 2546 | 99.8 | Plus |
nuf-PL | 515 | CG33991-PL | 1..515 | 1..502 | 2522 | 97.3 | Plus |
nuf-PG | 530 | CG33991-PG | 1..530 | 1..502 | 2496 | 94.5 | Plus |
nuf-PH | 529 | CG33991-PH | 1..529 | 1..502 | 2480 | 94.3 | Plus |