Clone BS13150 Report

Search the DGRC for BS13150

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:131
Well:50
Vector:pDNR-Dual
Associated Gene/Transcriptnuf-RB
Protein status:BS13150.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13150.3prime Sequence

738 bp (693 high quality bases) assembled on 2006-10-13

> BS13150.3prime
ATGGTCTAGAAAGCTTCTACTTTCGCTCCATGGGCTTGACTTCCAGCAAT
TGAGGATAGTTCTCCACGATGTTGAGTAGAATGGTATCAATATAGTGCTT
AAGCCGAACATTTTCATCCTCCTTTTCCTGGAAGGCCTGTTGTAGCTGGG
CTTGTGACATCTCCTCGAGCTCCTGAGCCAAACTGTTGAGTGTTCCGTTC
AGCAGATGGCGACCCTGCTCCACGCCATTTGTCAGCATGGTGGCCTGGTT
GGTCAGCATCGTGGCCTGCAGCTCCTCGTTCTGTTCTTCGAGGGTTCGGT
TCTTCTGGCGCATCTCCTCGAGCTCCTGATGCAGCTCCTCCAGTCTTATG
CTCTCCGGCGATGTGGTCGGCATTGCCCGGGCTCCACTCTCCTCGCGAGC
ACGCTGCAGTTCCCGGCCCAGCTCCAGCATCAGCTCCTCGGTGGACTTCT
TCTCCTGTTCGTGGCGGCGCAGTGCCTGTGCCTGCTCCTCGTGCTCCTGT
TGCAGGACGCCGATTTGGTCGCGCGCCAGCTCCAACTGTTCCTCGGTGCG
ATGGAGGTCATTGGCCTGCTTGTCACACAGGACACGCAGTCGGGCGGCTT
CTTCCCGCAGTGCCGTTGCCTCGATCTCGGTGGCACGGATCTTCATCTGG
CAGTTCTCGTTCTGCAGCGAGGCTTCACGCTCCACGCGGGCCAAAATCTC
GCGGTGCCGCTTCTGCTCCTCTGCCAAACGCTCCTCGG

BS13150.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG33991-PC 1509 nuf-RC 788..1509 738..17 3610 100 Minus
CG33991-PA 1509 nuf-RA 788..1509 738..17 3610 100 Minus
CG33991-PD 951 nuf-RD 230..951 738..17 3610 100 Minus
CG33991-PB 918 nuf-RB 197..918 738..17 3610 100 Minus
CG33991-PE 1587 nuf-RE 866..1587 738..17 3610 100 Minus
CG33991-PF 1587 nuf-RF 866..1587 738..17 3610 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RF 3099 CG33991-RF 1183..1904 738..17 3610 100 Minus
nuf-RE 3233 CG33991-RE 1317..2038 738..17 3610 100 Minus
nuf-RB 2373 CG33991-RB 457..1178 738..17 3610 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14230669..14231112 738..295 2220 100 Minus
3L 28110227 3L 14231177..14231325 294..146 745 100 Minus
3L 28110227 3L 14231924..14232055 148..17 660 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:14:36 has no hits.

BS13150.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:43 Download gff for BS13150.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33991-PF 866..1587 17..738 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:35:06 Download gff for BS13150.3prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RB 457..1187 7..738 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:15 Download gff for BS13150.3prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RB 457..1187 7..738 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:15 Download gff for BS13150.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14230669..14231112 295..738 100 -> Minus
3L 14231177..14231325 146..294 100 -> Minus
3L 14231927..14232064 7..145 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:35:06 Download gff for BS13150.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14223769..14224212 295..738 100 -> Minus
arm_3L 14224277..14224425 146..294 100 -> Minus
arm_3L 14225027..14225164 7..145 97   Minus

BS13150.5prime Sequence

802 bp (745 high quality bases) assembled on 2006-10-13

> BS13150.5prime
GAAGTTATCAGTCGACATGGCACCAATGCCCCGAATTCAGTTACCCAATG
GAAATTCTTCCATAAAGGCTAGCACAAATGATTTTCTCTTTGCGGAAACA
ATGTCCGGCGGCAGTAGTCCCACCCCCAGCAGTCCGCCATCCAGTACAGC
AGGCGTTGCCAAATCTCAGTGTTCTTCCCTTTCGGATGGCGAATCCTTTG
AGGGATATGGCGAAAATGAGTATCCCACCCAACTTCGCGAAGCCCGCAGC
TCCAATTCCAATGGGAGCCATAATATGAGCAATCATATTAACAATAATTC
TAATATCAGCGTGGGCAACAACAGTGGACACAACCACAGTGGACACTCGA
ACGATGGAAATAACAACCTAAATGGCAGCACTGGCGTCGAACTCGATTTG
GCTCCACACGTCGGCTCATCAACACCTCAAGATGATGACGAACTAAACAT
AATGCCCCGGGATAATTGGGCCAGGCGCAGTCTGCGACGAACTCCCACCA
GTTCCGGCCGCAGGCAAATTAGTTCAAATGCCTTAGCCAGCCAACTCTAT
AGATCATCGAGCTTTAACTCATCGGGCCGTAGCTCCAACTGTGATACAAC
AGAAGACATGTACAGCGACATAAGCTTGGAGAATCGTCATGACTACGATT
ATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCAGATACACAG
AATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATATGCAGTCCT
TCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGTCGGAACTGC
GT

BS13150.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG33991-PC 1509 nuf-RC 1..786 17..802 3905 99.8 Plus
CG33991-PA 1509 nuf-RA 1..786 17..802 3905 99.8 Plus
CG33991-PB 918 nuf-RB 1..195 608..802 975 100 Plus
CG33991-PD 951 nuf-RD 82..228 656..802 735 100 Plus
CG33991-PE 1587 nuf-RE 718..864 656..802 735 100 Plus
CG33991-PF 1587 nuf-RF 718..864 656..802 735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RL 2735 CG33991-RL 741..1528 15..802 3925 99.9 Plus
nuf-RA 2696 CG33991-RA 741..1528 15..802 3925 99.9 Plus
nuf-RC 3446 CG33991-RC 741..1528 15..802 3925 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14200162..14200447 147..432 1430 100 Plus
3L 28110227 3L 14230175..14230310 655..790 680 100 Plus
3L 28110227 3L 14199966..14200100 15..149 660 99.3 Plus
3L 28110227 3L 14213087..14213203 539..655 585 100 Plus
3L 28110227 3L 14200739..14200807 433..501 345 100 Plus
3L 28110227 3L 14212191..14212232 499..540 210 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:10:05 has no hits.

BS13150.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:43 Download gff for BS13150.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33991-PA 1..786 17..802 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:34:12 Download gff for BS13150.5prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 735..1528 9..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:28:06 Download gff for BS13150.5prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 735..1528 9..802 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:28:06 Download gff for BS13150.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14200165..14200447 150..432 100 -> Plus
3L 14200739..14200807 433..501 100 -> Plus
3L 14212194..14212232 502..540 100 -> Plus
3L 14213089..14213203 541..655 100 -> Plus
3L 14230176..14230310 656..790 100 -> Plus
3L 14199960..14200100 9..149 96 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:34:12 Download gff for BS13150.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14193060..14193200 9..149 96 -> Plus
arm_3L 14193265..14193547 150..432 100 -> Plus
arm_3L 14193839..14193907 433..501 100 -> Plus
arm_3L 14205294..14205332 502..540 100 -> Plus
arm_3L 14206189..14206303 541..655 100 -> Plus
arm_3L 14223276..14223410 656..790 100 -> Plus

BS13150.complete Sequence

1541 bp assembled on 2007-10-31

GenBank Submission: KX801646

> BS13150.complete
GAAGTTATCAGTCGACATGGCACCAATGCCCCGAATTCAGTTACCCAATG
GAAATTCTTCCATAAAGGCTAGCACAAATGATTTTCTCTTTGCGGAAACA
ATGTCCGGCGGCAGTAGTCCCACCCCCAGCAGTCCGCCATCCAGTACAGC
AGGCGTTGCCAAATCTCAGTGTTCTTCCCTTTCGGATGGCGAATCCTTTG
AGGGATATGGCGAAAATGAGTATCCCACCCAACTTCGCGAAGCCCGCAGC
TCCAATTCCAATGGGAGCCATAATATGAGCAATCATATTAACAATAATTC
TAATATCAGCGTGGGCAACAACAGTGGACACAACCACAGTGGACACTCGA
ACGATGGAAATAACAACCTAAATGGCAGCACTGGCGTCGAACTCGATTTG
GCTCCACACGTCGGCTCATCAACACCTCAAGATGATGACGAACTAAACAT
AATGCCCCGGGATAATTGGGCCAGGCGCAGTCTGCGACGAACTCCCACCA
GTTCCGGCCGCAGGCAAATTAGTTCAAATGCCTTAGCCAGCCAACTCTAT
AGATCATCGAGCTTTAACTCATCGGGCCGTAGCTCCAACTGTGATACAAC
AGAAGACATGTACAGCGACATAAGCTTGGAGAATCGTCATGACTACGATT
ATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCAGATACACAG
AATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATATGCAGTCCT
TCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGTCGGAACTGC
GTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGCGAGATTTTG
GCCCGCGTGGAGCGTGAAGCCTCGCTGCAGAACGAGAACTGCCAGATGAA
GATCCGTGCCACCGAGATCGAGGCAACGGCACTGCGGGAAGAAGCCGCCC
GACTGCGTGTCCTGTGTGACAAGCAGGCCAATGACCTCCATCGCACCGAG
GAACAGTTGGAGCTGGCGCGCGACCAAATCGGCGTCCTGCAACAGGAGCA
CGAGGAGCAGGCACAGGCACTGCGCCGCCACGAACAGGAGAAGAAGTCCA
CCGAGGAGCTGATGCTGGAGCTGGGCCGGGAACTGCAGCGTGCTCGCGAG
GAGAGTGGAGCCCGGGCAATGCCGACCACATCGCCGGAGAGCATAAGACT
GGAGGAGCTGCATCAGGAGCTCGAGGAGATGCGCCAGAAGAACCGAACCC
TCGAAGAACAGAACGAGGAGCTGCAGGCCACGATGCTGACCAACCAGGCC
ACCATGCTGACAAATGGCGTGGAGCAGGGTCGCCATCTGCTGAACGGAAC
ACTCAACAGTTTGGCTCAGGAGCTCGAGGAGATGTCACAAGCCCAGCTAC
AACAGGCCTTCCAGGAAAAGGAGGATGAAAATGTTCGGCTTAAGCACTAT
ATTGATACCATTCTACTCAACATCGTGGAGAACTATCCTCAATTGCTGGA
AGTCAAGCCCATGGAGCGAAAGTAGAAGCTTTCTAGACCAT

BS13150.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RA 1509 CG33991-PA 1..1509 17..1525 7530 99.9 Plus
nuf-RC 1509 CG33991-PC 1..1509 17..1525 7530 99.9 Plus
nuf-RL 1548 CG33991-PL 1..1380 17..1396 6885 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RA 2696 CG33991-RA 741..2251 15..1525 7540 99.9 Plus
nuf-RC 3446 CG33991-RC 741..2251 15..1525 7540 99.9 Plus
nuf-RL 2735 CG33991-RL 741..2122 15..1396 6895 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14230654..14231112 789..1247 2295 100 Plus
3L 28110227 3L 14200162..14200447 147..432 1430 100 Plus
3L 28110227 3L 14231177..14231325 1248..1396 745 100 Plus
3L 28110227 3L 14230175..14230310 655..790 680 100 Plus
3L 28110227 3L 14199966..14200100 15..149 660 99.3 Plus
3L 28110227 3L 14231924..14232055 1394..1525 660 100 Plus
3L 28110227 3L 14213087..14213203 539..655 585 100 Plus
3L 28110227 3L 14200739..14200807 433..501 345 100 Plus
3L 28110227 3L 14212191..14212232 499..540 210 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:07:03 has no hits.

BS13150.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:37 Download gff for BS13150.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RA 1..1509 17..1525 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:35:40 Download gff for BS13150.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RA 739..2247 17..1525 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:05 Download gff for BS13150.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 743..2251 17..1525 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:44 Download gff for BS13150.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RA 739..2247 17..1525 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:40 Download gff for BS13150.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 743..2251 17..1525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:40 Download gff for BS13150.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14200165..14200447 150..432 100 -> Plus
3L 14200739..14200807 433..501 100 -> Plus
3L 14212194..14212232 502..540 100 -> Plus
3L 14213089..14213203 541..655 100 -> Plus
3L 14230176..14230310 656..790 100 -> Plus
3L 14199968..14200100 17..149 99 -> Plus
3L 14230656..14231112 791..1247 100 -> Plus
3L 14231177..14231325 1248..1396 100 -> Plus
3L 14231927..14232055 1397..1525 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:05 Download gff for BS13150.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14193068..14193200 17..149 99 -> Plus
arm_3L 14193265..14193547 150..432 100 -> Plus
arm_3L 14193839..14193907 433..501 100 -> Plus
arm_3L 14205294..14205332 502..540 100 -> Plus
arm_3L 14206189..14206303 541..655 100 -> Plus
arm_3L 14223276..14223410 656..790 100 -> Plus
arm_3L 14223756..14224212 791..1247 100 -> Plus
arm_3L 14224277..14224425 1248..1396 100 -> Plus
arm_3L 14225027..14225155 1397..1525 100   Plus

BS13150.pep Sequence

Translation from 16 to 1524

> BS13150.pep
MAPMPRIQLPNGNSSIKASTNDFLFAETMSGGSSPTPSSPPSSTAGVAKS
QCSSLSDGESFEGYGENEYPTQLREARSSNSNGSHNMSNHINNNSNISVG
NNSGHNHSGHSNDGNNNLNGSTGVELDLAPHVGSSTPQDDDELNIMPRDN
WARRSLRRTPTSSGRRQISSNALASQLYRSSSFNSSGRSSNCDTTEDMYS
DISLENRHDYDYRLELLQRKVDDLSDTQNIAEDRTTRTKTEYAVLQARYH
MLEEQYRESELRAEERLAEEQKRHREILARVEREASLQNENCQMKIRATE
IEATALREEAARLRVLCDKQANDLHRTEEQLELARDQIGVLQQEHEEQAQ
ALRRHEQEKKSTEELMLELGRELQRAREESGARAMPTTSPESIRLEELHQ
ELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVEQGRHLLNGTLNSLA
QELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNIVENYPQLLEVKPME
RK*

BS13150.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-PA 502 CG33991-PA 1..502 1..502 2546 99.8 Plus
nuf-PC 502 CG33991-PC 1..502 1..502 2546 99.8 Plus
nuf-PL 515 CG33991-PL 1..515 1..502 2522 97.3 Plus
nuf-PG 530 CG33991-PG 1..530 1..502 2496 94.5 Plus
nuf-PH 529 CG33991-PH 1..529 1..502 2480 94.3 Plus