Clone Sequence Records
BS13162.complete Sequence
1451 bp assembled on 2009-12-07
GenBank Submission: KX802599
> BS13162.complete
GAAGTTATCAGTCGACATGTCCAGGAACGAGGATACACCGATTGCCAAAC
GCGACTCTGGACGGACGCGCCGTAGCAACTATGGCACGGCCCCATCCTTT
CACCTGATGGAGCAGGGACAACCAGGTGTGAACGTAGTCGCTGGCAATGG
CAACAACAATCACCCGGCAACGCCTGCAACACCTGCTCAAATTTTTTGTT
TACACGGGCGGTCCAACAACGTCGAAGTCCGGGATCATTGTCATCGTGCC
CGCAGCGAGGGCGTGGATGTGAAGGCTCGCCGAAAACTGATCATTGCGAG
CATTTTGTGTCTGGTTTTTATGATTGCCGAAATCGTGGGTGGCGTCCTAT
CGAACAGCCTGGCCATCGCAACAGACGCCGCTCATTTGCTAACGGATTTC
GCCAGTTTTATGATCTCGTTGTTTGCCATCTGGATTGCCGGGCGACCATC
TACGCAGCGGATGTCCTTCGGCTGGTATCGGGCTGAGGTTATTGGCGCCA
TGGCCTCCGTCTTCATGATCTGGGTCATCACGGGCATCCTCGTTTGGCTG
GCCATCGGACGACTCATCAGCGGCGACTACGAGGTGAATGCGAAGATCAT
GCTGATCACATCCGGCCTGGCCATATTGGTGAATGTCATCATGGGCGTTC
AGCTGCAGCATGGCCATTCGCATGGCCTGGGCGGTGGGCATGGTCACAGC
CATGGTGGTTCCAAGAACGCATCCCATGTGCAGGCCACATCCACACCATG
CTCCGATTCGCCCAGCCAGCGTATTGAGGGCGGTGTGGCCTACGCGCCCG
AGGATGCCGAATTGCCTGGCGGCGGGCTGCCAACGTTCTCCTACCAAAAT
ACCAAGTTGGTCGATCCCACACTGGATTTGGAAATTGCTGCCGTTCTGGC
CGAAACGGCACCCGGATCACATCATCACGGCGGACCGGTTGGACGCGAGG
CCGTCAACATGAATGTCCGGGCAGCCCTCATCCATGTGATTGGCGATGTC
ATCCAGAGCGTGGGAGTTTTTGTCGCCGCTGGCGTGATTTACTTTTGGCC
AGAGTACTCCATCGTTGATCCCATTTGCACGTTTGTGTTCTCCATCATTG
TGCTCTTCACCACGTTCACGATCATGAAGGATGCGTTGCTGGTGCTCATG
GAGGGGACTCCCAACTATATGCACTACGCCGAGGTACTGCAGATTTTCCA
AGGCATCGAGGGCGTTGAGCGGGTGCACAATTTGCGCATCTGGGCGCTGA
GCATTAATAAAGTGGCGCTATCTGCACATTTGGCCATTGCTGAAAATGCG
AATCCGAAGAGGATCCTGGATGCGGCCACATCGGCGGTTCATTTGCGCTA
TAACTTCTTTGAGACCACCATCCAGATCGAGGACTATACCGCCCAAATGG
AGAGCTGCCTGCAGTGCAATGTGCCCGAGAAGTAGAAGCTTTCTAGACCA
T
BS13162.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT35C-RA | 1419 | CG3994-PA | 1..1419 | 17..1435 | 7095 | 100 | Plus |
ZnT35C-RB | 1323 | CG3994-PB | 115..1323 | 227..1435 | 6045 | 100 | Plus |
ZnT33D-RB | 2106 | CG31860-PB | 1090..1406 | 356..672 | 250 | 71.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT35C-RA | 1740 | CG3994-RA | 121..1540 | 17..1436 | 7100 | 100 | Plus |
ZnT35C-RB | 1812 | CG3994-RB | 403..1612 | 227..1436 | 6050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15229850..15230354 | 1144..640 | 2525 | 100 | Minus |
2L | 23513712 | 2L | 15236605..15236785 | 639..459 | 905 | 100 | Minus |
2L | 23513712 | 2L | 15246174..15246352 | 227..49 | 895 | 100 | Minus |
2L | 23513712 | 2L | 15229544..15229692 | 1289..1141 | 745 | 100 | Minus |
2L | 23513712 | 2L | 15228928..15229075 | 1436..1289 | 740 | 100 | Minus |
2L | 23513712 | 2L | 15240464..15240586 | 460..338 | 615 | 100 | Minus |
2L | 23513712 | 2L | 15241409..15241523 | 340..226 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:51:38 has no hits.
BS13162.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:19 Download gff for
BS13162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT35C-RA | 183..1601 | 17..1435 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:47 Download gff for
BS13162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT35C-RA | 121..1539 | 17..1435 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:55 Download gff for
BS13162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3994-RA | 183..1601 | 17..1435 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:33 Download gff for
BS13162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT35C-RA | 121..1539 | 17..1435 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:33 Download gff for
BS13162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15246174..15246352 | 49..227 | 100 | <- | Minus |
2L | 15247563..15247594 | 17..48 | 100 | | Minus |
2L | 15228929..15229074 | 1290..1435 | 100 | <- | Minus |
2L | 15229544..15229691 | 1142..1289 | 100 | <- | Minus |
2L | 15229853..15230354 | 640..1141 | 100 | <- | Minus |
2L | 15236605..15236784 | 460..639 | 100 | <- | Minus |
2L | 15240465..15240585 | 339..459 | 100 | <- | Minus |
2L | 15241411..15241521 | 228..338 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:47 Download gff for
BS13162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15246174..15246352 | 49..227 | 100 | <- | Minus |
arm_2L | 15247563..15247594 | 17..48 | 100 | | Minus |
arm_2L | 15228929..15229074 | 1290..1435 | 100 | <- | Minus |
arm_2L | 15229544..15229691 | 1142..1289 | 100 | <- | Minus |
arm_2L | 15229853..15230354 | 640..1141 | 100 | <- | Minus |
arm_2L | 15236605..15236784 | 460..639 | 100 | <- | Minus |
arm_2L | 15240465..15240585 | 339..459 | 100 | <- | Minus |
arm_2L | 15241411..15241521 | 228..338 | 100 | <- | Minus |
BS13162.3prime Sequence
744 bp (678 high quality bases) assembled on 2006-10-13
> BS13162.3prime
ATGGTCTAGAAAGCTTCTACTTCTCGGGCACATTGCACTGCAGGCAGCTC
TCCATTTGGGCGGTATAGTCCTCGATCTGGATGGTGGTCTCAAAGAAGTT
ATAGCGCAAATGAACCGCCGATGTGGCCGCATCCAGGATCCTCTTCGGAT
TCGCATTTTCAGCAATGGCCAAATGTGCAGATAGCGCCACTTTATTAATG
CTCAGCGCCCAGATGCGCAAATTGTGCACCCGCTCAACGCCCTCGATGCC
TTGGAAAATCTGCAGTACCTCGGCGTAGTGCATATAGTTGGGAGTCCCCT
CCATGAGCACCAGCAACGCATCCTTCATGATCGTGAACGTGGTGAAGAGC
ACAATGATGGAGAACACAAACGTGCAAATGGGATCAACGATGGAGTACTC
TGGCCAAAAGTAAATCACGCCAGCGGCGACAAAAACTCCCACGCTCTGGA
TGACATCGCCAATCACATGGATGAGGGCTGCCCGGACATTCATGTTGACG
GCCTCGCGTCCAACCGGTCCGCCGTGATGATGTGATCCGGGTGCCGTTTC
GGCCAGAACGGCAGCAATTTCCAAATCCAGTGTGGGATCGACCAACTTGG
TATTTTGGTAGGAGAACGTTGGCAGCCCGCCGCCAGGCAATTCGGCATCC
TCGGGCGCGTAGGCCACACCGCCCTCAATACCCTGGCTGGGCGAATCGGA
GCATGGTGTGGATGTGGCCTGCACATTGGGATGCGTTCTTGGAA
BS13162.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:34:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3994-PA | 1419 | CG3994-RA | 693..1419 | 744..17 | 3575 | 99.7 | Minus |
CG3994-PB | 1323 | CG3994-RB | 597..1323 | 744..17 | 3575 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT35C-RB | 1812 | CG3994-RB | 885..1612 | 744..16 | 3605 | 99.7 | Minus |
ZnT35C-RA | 1740 | CG3994-RA | 813..1540 | 744..16 | 3605 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:08:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15229850..15230285 | 308..744 | 2120 | 99.5 | Plus |
2L | 23513712 | 2L | 15229544..15229692 | 163..311 | 745 | 100 | Plus |
2L | 23513712 | 2L | 15228928..15229075 | 16..163 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 02:08:46 has no hits.
BS13162.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:52 Download gff for
BS13162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3994-PB | 599..1323 | 17..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:08:20 Download gff for
BS13162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT35C-RA | 813..1547 | 5..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:02:49 Download gff for
BS13162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT35C-RA | 813..1547 | 5..744 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:02:49 Download gff for
BS13162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15228921..15229074 | 5..162 | 97 | <- | Plus |
2L | 15229544..15229691 | 163..310 | 100 | <- | Plus |
2L | 15229853..15230285 | 311..744 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:08:20 Download gff for
BS13162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15228921..15229074 | 5..162 | 97 | <- | Plus |
arm_2L | 15229544..15229691 | 163..310 | 100 | <- | Plus |
arm_2L | 15229853..15230285 | 311..744 | 99 | | Plus |
BS13162.5prime Sequence
698 bp (668 high quality bases) assembled on 2006-10-13
> BS13162.5prime
GAAGTTATCAGTCGACATGTCCAGGAACGAGGATACACCGATTGCCAAAC
GCGACTCTGGACGGACGCGCCGTAGCAACTATGGCACGGCCCCATCCTTT
CACCTGATGGAGCAGGGACAACCAGGTGTGAACGTAGTCGCTGGCAATGG
CAACAACAATCACCCGGCAACGCCTGCAACACCTGCTCAAATTTTTTGTT
TACACGGGCGGTCCAACAACGTCGAAGTCCGGGATCATTGTCATCGTGCC
CGCAGCGAGGGCGTGGATGTGAAGGCTCGCCGAAAACTGATCATTGCGAG
CATTTTGTGTCTGGTTTTTATGATTGCCGAAATCGTGGGTGGCGTCCTAT
CGAACAGCCTGGCCATCGCAACAGACGCCGCTCATTTGCTAACGGATTTC
GCCAGTTTTATGATCTCGTTGTTTGCCATCTGGATTGCCGGGCGACCATC
TACGCAGCGGATGTCCTTCGGCTGGTATCGGGCTGAGGTTATTGGCGCCA
TGGCCTCCGTCTTCATGATCTGGGTCATCACGGGCATCCTCGTTTGGCTG
GCCATCGGACGACTCATCAGCGGCGACTACGAGGTGAATGCGAAGATCAT
GCTGATCACATCCGGCCTGGCCATATTGGTGAATGTCATCATGGGCGTTC
AGCTGCAGCATGGCCATTCGCATGGCCTGGGCGGTGGGCATGGTCACA
BS13162.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3994-PA | 1419 | CG3994-RA | 1..682 | 17..698 | 3410 | 100 | Plus |
CG3994-PB | 1323 | CG3994-RB | 115..586 | 227..698 | 2360 | 100 | Plus |
CG33911-PA | 1746 | CG33911-RA | 1093..1253 | 619..459 | 805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:41:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT35C-RA | 1740 | CG3994-RA | 121..802 | 17..698 | 3410 | 100 | Plus |
ZnT35C-RB | 1812 | CG3994-RB | 403..874 | 227..698 | 2360 | 100 | Plus |
ZnT33D-RB | 2257 | CG31860-RB | 1168..1484 | 356..672 | 265 | 73.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15236605..15236785 | 639..459 | 905 | 100 | Minus |
2L | 23513712 | 2L | 15246174..15246352 | 227..49 | 895 | 100 | Minus |
2L | 23513712 | 2L | 15240464..15240586 | 460..338 | 615 | 100 | Minus |
2L | 23513712 | 2L | 15241409..15241523 | 340..226 | 575 | 100 | Minus |
2L | 23513712 | 2L | 15230296..15230354 | 698..640 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:41:45 has no hits.
BS13162.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:52 Download gff for
BS13162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3994-PA | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:38:56 Download gff for
BS13162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT35C-RA | 121..801 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:34 Download gff for
BS13162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT35C-RA | 121..801 | 17..697 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:34 Download gff for
BS13162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15246174..15246352 | 49..227 | 100 | <- | Minus |
2L | 15247563..15247594 | 17..48 | 100 | | Minus |
2L | 15241411..15241521 | 228..338 | 100 | <- | Minus |
2L | 15230297..15230354 | 640..697 | 100 | <- | Minus |
2L | 15236605..15236784 | 460..639 | 100 | <- | Minus |
2L | 15240465..15240585 | 339..459 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:38:56 Download gff for
BS13162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15236605..15236784 | 460..639 | 100 | <- | Minus |
arm_2L | 15240465..15240585 | 339..459 | 100 | <- | Minus |
arm_2L | 15241411..15241521 | 228..338 | 100 | <- | Minus |
arm_2L | 15246174..15246352 | 49..227 | 100 | <- | Minus |
arm_2L | 15247563..15247594 | 17..48 | 100 | | Minus |
arm_2L | 15230297..15230354 | 640..697 | 100 | <- | Minus |
BS13162.pep Sequence
Translation from 16 to 1434
> BS13162.pep
MSRNEDTPIAKRDSGRTRRSNYGTAPSFHLMEQGQPGVNVVAGNGNNNHP
ATPATPAQIFCLHGRSNNVEVRDHCHRARSEGVDVKARRKLIIASILCLV
FMIAEIVGGVLSNSLAIATDAAHLLTDFASFMISLFAIWIAGRPSTQRMS
FGWYRAEVIGAMASVFMIWVITGILVWLAIGRLISGDYEVNAKIMLITSG
LAILVNVIMGVQLQHGHSHGLGGGHGHSHGGSKNASHVQATSTPCSDSPS
QRIEGGVAYAPEDAELPGGGLPTFSYQNTKLVDPTLDLEIAAVLAETAPG
SHHHGGPVGREAVNMNVRAALIHVIGDVIQSVGVFVAAGVIYFWPEYSIV
DPICTFVFSIIVLFTTFTIMKDALLVLMEGTPNYMHYAEVLQIFQGIEGV
ERVHNLRIWALSINKVALSAHLAIAENANPKRILDAATSAVHLRYNFFET
TIQIEDYTAQMESCLQCNVPEK*
BS13162.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT35C-PA | 472 | CG3994-PA | 1..472 | 1..472 | 2447 | 100 | Plus |
ZnT35C-PB | 440 | CG3994-PB | 39..440 | 71..472 | 2069 | 100 | Plus |
ZnT33D-PB | 701 | CG31860-PB | 323..664 | 74..470 | 995 | 53.5 | Plus |
ZnT41F-PD | 498 | CG11163-PD | 128..497 | 86..458 | 608 | 36.6 | Plus |
ZnT41F-PC | 498 | CG11163-PC | 128..497 | 86..458 | 608 | 36.6 | Plus |