Clone BS13162 Report

Search the DGRC for BS13162

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:131
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptZnT35C-RA
Protein status:BS13162.pep: full length peptide match
Sequenced Size:1451

Clone Sequence Records

BS13162.complete Sequence

1451 bp assembled on 2009-12-07

GenBank Submission: KX802599

> BS13162.complete
GAAGTTATCAGTCGACATGTCCAGGAACGAGGATACACCGATTGCCAAAC
GCGACTCTGGACGGACGCGCCGTAGCAACTATGGCACGGCCCCATCCTTT
CACCTGATGGAGCAGGGACAACCAGGTGTGAACGTAGTCGCTGGCAATGG
CAACAACAATCACCCGGCAACGCCTGCAACACCTGCTCAAATTTTTTGTT
TACACGGGCGGTCCAACAACGTCGAAGTCCGGGATCATTGTCATCGTGCC
CGCAGCGAGGGCGTGGATGTGAAGGCTCGCCGAAAACTGATCATTGCGAG
CATTTTGTGTCTGGTTTTTATGATTGCCGAAATCGTGGGTGGCGTCCTAT
CGAACAGCCTGGCCATCGCAACAGACGCCGCTCATTTGCTAACGGATTTC
GCCAGTTTTATGATCTCGTTGTTTGCCATCTGGATTGCCGGGCGACCATC
TACGCAGCGGATGTCCTTCGGCTGGTATCGGGCTGAGGTTATTGGCGCCA
TGGCCTCCGTCTTCATGATCTGGGTCATCACGGGCATCCTCGTTTGGCTG
GCCATCGGACGACTCATCAGCGGCGACTACGAGGTGAATGCGAAGATCAT
GCTGATCACATCCGGCCTGGCCATATTGGTGAATGTCATCATGGGCGTTC
AGCTGCAGCATGGCCATTCGCATGGCCTGGGCGGTGGGCATGGTCACAGC
CATGGTGGTTCCAAGAACGCATCCCATGTGCAGGCCACATCCACACCATG
CTCCGATTCGCCCAGCCAGCGTATTGAGGGCGGTGTGGCCTACGCGCCCG
AGGATGCCGAATTGCCTGGCGGCGGGCTGCCAACGTTCTCCTACCAAAAT
ACCAAGTTGGTCGATCCCACACTGGATTTGGAAATTGCTGCCGTTCTGGC
CGAAACGGCACCCGGATCACATCATCACGGCGGACCGGTTGGACGCGAGG
CCGTCAACATGAATGTCCGGGCAGCCCTCATCCATGTGATTGGCGATGTC
ATCCAGAGCGTGGGAGTTTTTGTCGCCGCTGGCGTGATTTACTTTTGGCC
AGAGTACTCCATCGTTGATCCCATTTGCACGTTTGTGTTCTCCATCATTG
TGCTCTTCACCACGTTCACGATCATGAAGGATGCGTTGCTGGTGCTCATG
GAGGGGACTCCCAACTATATGCACTACGCCGAGGTACTGCAGATTTTCCA
AGGCATCGAGGGCGTTGAGCGGGTGCACAATTTGCGCATCTGGGCGCTGA
GCATTAATAAAGTGGCGCTATCTGCACATTTGGCCATTGCTGAAAATGCG
AATCCGAAGAGGATCCTGGATGCGGCCACATCGGCGGTTCATTTGCGCTA
TAACTTCTTTGAGACCACCATCCAGATCGAGGACTATACCGCCCAAATGG
AGAGCTGCCTGCAGTGCAATGTGCCCGAGAAGTAGAAGCTTTCTAGACCA
T

BS13162.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT35C-RA 1419 CG3994-PA 1..1419 17..1435 7095 100 Plus
ZnT35C-RB 1323 CG3994-PB 115..1323 227..1435 6045 100 Plus
ZnT33D-RB 2106 CG31860-PB 1090..1406 356..672 250 71.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT35C-RA 1740 CG3994-RA 121..1540 17..1436 7100 100 Plus
ZnT35C-RB 1812 CG3994-RB 403..1612 227..1436 6050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15229850..15230354 1144..640 2525 100 Minus
2L 23513712 2L 15236605..15236785 639..459 905 100 Minus
2L 23513712 2L 15246174..15246352 227..49 895 100 Minus
2L 23513712 2L 15229544..15229692 1289..1141 745 100 Minus
2L 23513712 2L 15228928..15229075 1436..1289 740 100 Minus
2L 23513712 2L 15240464..15240586 460..338 615 100 Minus
2L 23513712 2L 15241409..15241523 340..226 575 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:51:38 has no hits.

BS13162.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:19 Download gff for BS13162.complete
Subject Subject Range Query Range Percent Splice Strand
ZnT35C-RA 183..1601 17..1435 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:47 Download gff for BS13162.complete
Subject Subject Range Query Range Percent Splice Strand
ZnT35C-RA 121..1539 17..1435 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:55 Download gff for BS13162.complete
Subject Subject Range Query Range Percent Splice Strand
CG3994-RA 183..1601 17..1435 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:33 Download gff for BS13162.complete
Subject Subject Range Query Range Percent Splice Strand
ZnT35C-RA 121..1539 17..1435 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:33 Download gff for BS13162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15246174..15246352 49..227 100 <- Minus
2L 15247563..15247594 17..48 100   Minus
2L 15228929..15229074 1290..1435 100 <- Minus
2L 15229544..15229691 1142..1289 100 <- Minus
2L 15229853..15230354 640..1141 100 <- Minus
2L 15236605..15236784 460..639 100 <- Minus
2L 15240465..15240585 339..459 100 <- Minus
2L 15241411..15241521 228..338 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:47 Download gff for BS13162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15246174..15246352 49..227 100 <- Minus
arm_2L 15247563..15247594 17..48 100   Minus
arm_2L 15228929..15229074 1290..1435 100 <- Minus
arm_2L 15229544..15229691 1142..1289 100 <- Minus
arm_2L 15229853..15230354 640..1141 100 <- Minus
arm_2L 15236605..15236784 460..639 100 <- Minus
arm_2L 15240465..15240585 339..459 100 <- Minus
arm_2L 15241411..15241521 228..338 100 <- Minus

BS13162.3prime Sequence

744 bp (678 high quality bases) assembled on 2006-10-13

> BS13162.3prime
ATGGTCTAGAAAGCTTCTACTTCTCGGGCACATTGCACTGCAGGCAGCTC
TCCATTTGGGCGGTATAGTCCTCGATCTGGATGGTGGTCTCAAAGAAGTT
ATAGCGCAAATGAACCGCCGATGTGGCCGCATCCAGGATCCTCTTCGGAT
TCGCATTTTCAGCAATGGCCAAATGTGCAGATAGCGCCACTTTATTAATG
CTCAGCGCCCAGATGCGCAAATTGTGCACCCGCTCAACGCCCTCGATGCC
TTGGAAAATCTGCAGTACCTCGGCGTAGTGCATATAGTTGGGAGTCCCCT
CCATGAGCACCAGCAACGCATCCTTCATGATCGTGAACGTGGTGAAGAGC
ACAATGATGGAGAACACAAACGTGCAAATGGGATCAACGATGGAGTACTC
TGGCCAAAAGTAAATCACGCCAGCGGCGACAAAAACTCCCACGCTCTGGA
TGACATCGCCAATCACATGGATGAGGGCTGCCCGGACATTCATGTTGACG
GCCTCGCGTCCAACCGGTCCGCCGTGATGATGTGATCCGGGTGCCGTTTC
GGCCAGAACGGCAGCAATTTCCAAATCCAGTGTGGGATCGACCAACTTGG
TATTTTGGTAGGAGAACGTTGGCAGCCCGCCGCCAGGCAATTCGGCATCC
TCGGGCGCGTAGGCCACACCGCCCTCAATACCCTGGCTGGGCGAATCGGA
GCATGGTGTGGATGTGGCCTGCACATTGGGATGCGTTCTTGGAA

BS13162.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3994-PA 1419 CG3994-RA 693..1419 744..17 3575 99.7 Minus
CG3994-PB 1323 CG3994-RB 597..1323 744..17 3575 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT35C-RB 1812 CG3994-RB 885..1612 744..16 3605 99.7 Minus
ZnT35C-RA 1740 CG3994-RA 813..1540 744..16 3605 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15229850..15230285 308..744 2120 99.5 Plus
2L 23513712 2L 15229544..15229692 163..311 745 100 Plus
2L 23513712 2L 15228928..15229075 16..163 740 100 Plus
Blast to na_te.dros performed on 2015-02-05 02:08:46 has no hits.

BS13162.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:52 Download gff for BS13162.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3994-PB 599..1323 17..742 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:08:20 Download gff for BS13162.3prime
Subject Subject Range Query Range Percent Splice Strand
ZnT35C-RA 813..1547 5..744 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:02:49 Download gff for BS13162.3prime
Subject Subject Range Query Range Percent Splice Strand
ZnT35C-RA 813..1547 5..744 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:02:49 Download gff for BS13162.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15228921..15229074 5..162 97 <- Plus
2L 15229544..15229691 163..310 100 <- Plus
2L 15229853..15230285 311..744 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:08:20 Download gff for BS13162.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15228921..15229074 5..162 97 <- Plus
arm_2L 15229544..15229691 163..310 100 <- Plus
arm_2L 15229853..15230285 311..744 99   Plus

BS13162.5prime Sequence

698 bp (668 high quality bases) assembled on 2006-10-13

> BS13162.5prime
GAAGTTATCAGTCGACATGTCCAGGAACGAGGATACACCGATTGCCAAAC
GCGACTCTGGACGGACGCGCCGTAGCAACTATGGCACGGCCCCATCCTTT
CACCTGATGGAGCAGGGACAACCAGGTGTGAACGTAGTCGCTGGCAATGG
CAACAACAATCACCCGGCAACGCCTGCAACACCTGCTCAAATTTTTTGTT
TACACGGGCGGTCCAACAACGTCGAAGTCCGGGATCATTGTCATCGTGCC
CGCAGCGAGGGCGTGGATGTGAAGGCTCGCCGAAAACTGATCATTGCGAG
CATTTTGTGTCTGGTTTTTATGATTGCCGAAATCGTGGGTGGCGTCCTAT
CGAACAGCCTGGCCATCGCAACAGACGCCGCTCATTTGCTAACGGATTTC
GCCAGTTTTATGATCTCGTTGTTTGCCATCTGGATTGCCGGGCGACCATC
TACGCAGCGGATGTCCTTCGGCTGGTATCGGGCTGAGGTTATTGGCGCCA
TGGCCTCCGTCTTCATGATCTGGGTCATCACGGGCATCCTCGTTTGGCTG
GCCATCGGACGACTCATCAGCGGCGACTACGAGGTGAATGCGAAGATCAT
GCTGATCACATCCGGCCTGGCCATATTGGTGAATGTCATCATGGGCGTTC
AGCTGCAGCATGGCCATTCGCATGGCCTGGGCGGTGGGCATGGTCACA

BS13162.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3994-PA 1419 CG3994-RA 1..682 17..698 3410 100 Plus
CG3994-PB 1323 CG3994-RB 115..586 227..698 2360 100 Plus
CG33911-PA 1746 CG33911-RA 1093..1253 619..459 805 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT35C-RA 1740 CG3994-RA 121..802 17..698 3410 100 Plus
ZnT35C-RB 1812 CG3994-RB 403..874 227..698 2360 100 Plus
ZnT33D-RB 2257 CG31860-RB 1168..1484 356..672 265 73.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15236605..15236785 639..459 905 100 Minus
2L 23513712 2L 15246174..15246352 227..49 895 100 Minus
2L 23513712 2L 15240464..15240586 460..338 615 100 Minus
2L 23513712 2L 15241409..15241523 340..226 575 100 Minus
2L 23513712 2L 15230296..15230354 698..640 295 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:41:45 has no hits.

BS13162.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:52 Download gff for BS13162.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3994-PA 1..681 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:38:56 Download gff for BS13162.5prime
Subject Subject Range Query Range Percent Splice Strand
ZnT35C-RA 121..801 17..697 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:34 Download gff for BS13162.5prime
Subject Subject Range Query Range Percent Splice Strand
ZnT35C-RA 121..801 17..697 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:34 Download gff for BS13162.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15246174..15246352 49..227 100 <- Minus
2L 15247563..15247594 17..48 100   Minus
2L 15241411..15241521 228..338 100 <- Minus
2L 15230297..15230354 640..697 100 <- Minus
2L 15236605..15236784 460..639 100 <- Minus
2L 15240465..15240585 339..459 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:38:56 Download gff for BS13162.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15236605..15236784 460..639 100 <- Minus
arm_2L 15240465..15240585 339..459 100 <- Minus
arm_2L 15241411..15241521 228..338 100 <- Minus
arm_2L 15246174..15246352 49..227 100 <- Minus
arm_2L 15247563..15247594 17..48 100   Minus
arm_2L 15230297..15230354 640..697 100 <- Minus

BS13162.pep Sequence

Translation from 16 to 1434

> BS13162.pep
MSRNEDTPIAKRDSGRTRRSNYGTAPSFHLMEQGQPGVNVVAGNGNNNHP
ATPATPAQIFCLHGRSNNVEVRDHCHRARSEGVDVKARRKLIIASILCLV
FMIAEIVGGVLSNSLAIATDAAHLLTDFASFMISLFAIWIAGRPSTQRMS
FGWYRAEVIGAMASVFMIWVITGILVWLAIGRLISGDYEVNAKIMLITSG
LAILVNVIMGVQLQHGHSHGLGGGHGHSHGGSKNASHVQATSTPCSDSPS
QRIEGGVAYAPEDAELPGGGLPTFSYQNTKLVDPTLDLEIAAVLAETAPG
SHHHGGPVGREAVNMNVRAALIHVIGDVIQSVGVFVAAGVIYFWPEYSIV
DPICTFVFSIIVLFTTFTIMKDALLVLMEGTPNYMHYAEVLQIFQGIEGV
ERVHNLRIWALSINKVALSAHLAIAENANPKRILDAATSAVHLRYNFFET
TIQIEDYTAQMESCLQCNVPEK*

BS13162.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT35C-PA 472 CG3994-PA 1..472 1..472 2447 100 Plus
ZnT35C-PB 440 CG3994-PB 39..440 71..472 2069 100 Plus
ZnT33D-PB 701 CG31860-PB 323..664 74..470 995 53.5 Plus
ZnT41F-PD 498 CG11163-PD 128..497 86..458 608 36.6 Plus
ZnT41F-PC 498 CG11163-PC 128..497 86..458 608 36.6 Plus