Clone Sequence Records
BS13171.complete Sequence
1634 bp assembled on 2009-12-07
GenBank Submission: KX802904
> BS13171.complete
GAAGTTATCAGTCGACATGGCGCCCAAGGCAGCAGCTGTCAACATCAAGC
CAACGGCCAAGGCCTTCAAGGACAAGTCGAAGCCCACCGATGTGCGTTTG
TCCAACATCCAGGCGGCCAAAGCCGTTTCCGATGCTATCCGCACCAGTTT
GGGCCCCCGCGGCATGGACAAGATGATCCAGGCCGGCAACGGCGAGGTGT
CCATCACCAACGATGGCGCCACCATCCTGAAGCAGATGAATGTACTGCAC
CCGGCTGCCAAGATGCTGGTGGAGCTGTCGCGTGCCCAGGATGTGGCCGC
TGGTGACGGCACCACCTCCGTGGTTGTCATTGCCGGAGCTCTGCTTGAGG
CGTGCGAGAAGTTGCTGCAGAAGGGTCTGCATCCCACGGCCATTTCGGAC
TCGTTCCAGCGCTGCTCGAACAAGGCCGTCGAGATTCTTAAACAGATGTC
CACTCCCATCGAGCTGGACGACCGCGAGACGCTGATCAAGAGCGCCTCCA
CCTCGTTGAACTCCAAGGTGGTGTCGCAGCAGAGCAGCCTGCTGGCCCCC
ATTGCCGTGGATGCCGTGCTGAAGGTTACGGATCCCGGCAAGGAAACCTC
TGTGGATCTCAAGAACATCAAGGTCATCTCCAGCCTGGGTGGCACTGTTG
AGGACACCGAGCTGGTCGATGGATTGGTCTTCACCTGCCGCTCTGCCGGA
TCCAACGCTCCCAAGCGCATTGAGAAGGCCAAGATCGGTCTTATCCAGTT
CTGCATTTCGGCCCCCAAGACCGATATGGATCACAATGTGATTGTATCGG
ATTACGCTGCCATGGATCGTGTGCTCAAGGAGGAGCGTTCATACATCCTG
AACATTGTCAAGCAGATCAAGAAGTCAGGATGCAATGTTCTTCTCGTTCA
GAAGTCTATCTTGCGCGATGCTGTCTCTGATCTGGCTCAGCATTTCCTGG
ACAAGATCAAGTGCATGGTCGTTAAGGATGTGGAGCGCGAGGATATTGAG
TTCGTGTGCAAGACCCTGCACTGCCGACCGATCGCTTCGTTGGATCACTT
CACAGCCGAGAACCTTTCCAGTGCCGATCTGGTCGAGGAGGTGGCCAGTG
GTACCAACAAGTTTGTGAAGATCACCGGCATTCAGAACATGGGACGCACT
GTCTCGATCATCTGCCGCGGATCCAACAAGCTGGTGCTCGAGGAGGCTGC
TCGCTCCCTGCACGATGCCCTCTGTGTCGTCCGTTGCCTGGTGAAGCTGC
GCGCCCAGATTGTCGGCGGTGGTGCGCCCGAGATTGAGATGGCCCTGCAG
CTAGCCGCATTGGCACAAACCGTGGAGGGTGTGGATGCGTATTGCTTCCG
TGCATTTGCCGATGCTTTGGAGGTGATTCCCTCCACTCTGGCTGAGAACG
CCGGTTTGAATCCCATTGCCACGGTCACGGAGCTACGCAACCGCCACGCT
CAGGGTGAGAAGAACGCCGGTATTAATGTGCGCAAGGGCGCCATCACAGA
CATTTTCGCGGAGAACGTTGTGCAGCCGCTGCTGGTCAGTATTTCGTCGA
TCACCCTGGCCACGGAGACGATTCGATCGATCTTGAAGATCGACGATATT
GTCAACACCTTCAGTTAAAAGCTTTCTAGACCAT
BS13171.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:41:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5525-RA | 1602 | CG5525-PA | 1..1602 | 17..1618 | 7995 | 99.9 | Plus |
Tcp-1eta-RA | 1635 | CG8351-PA | 109..239 | 143..273 | 205 | 77.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5525-RA | 1916 | CG5525-RA | 113..1714 | 17..1618 | 7995 | 99.9 | Plus |
Tcp-1eta-RA | 1964 | CG8351-RA | 223..353 | 143..273 | 205 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12690617..12691304 | 1602..915 | 3425 | 99.9 | Minus |
2L | 23513712 | 2L | 12691565..12692219 | 775..121 | 3275 | 100 | Minus |
2L | 23513712 | 2L | 12691363..12691502 | 915..776 | 700 | 100 | Minus |
2L | 23513712 | 2L | 12692717..12692822 | 122..17 | 530 | 100 | Minus |
3R | 32079331 | 3R | 8801964..8802094 | 143..273 | 205 | 77.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:41:26 has no hits.
BS13171.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:38 Download gff for
BS13171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5525-RA | 1..1602 | 17..1618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:32 Download gff for
BS13171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5525-RA | 116..1715 | 17..1616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:51 Download gff for
BS13171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5525-RA | 113..1712 | 17..1616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:18 Download gff for
BS13171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5525-RA | 116..1715 | 17..1616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:35 Download gff for
BS13171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5525-RA | 113..1712 | 17..1616 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:35 Download gff for
BS13171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12690540..12690555 | 1601..1616 | 100 | <- | Minus |
2L | 12690619..12691303 | 916..1600 | 99 | <- | Minus |
2L | 12691363..12691502 | 776..915 | 100 | <- | Minus |
2L | 12691565..12692217 | 123..775 | 100 | <- | Minus |
2L | 12692717..12692822 | 17..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:51 Download gff for
BS13171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12690540..12690555 | 1601..1616 | 100 | <- | Minus |
arm_2L | 12690619..12691303 | 916..1600 | 99 | <- | Minus |
arm_2L | 12691363..12691502 | 776..915 | 100 | <- | Minus |
arm_2L | 12691565..12692217 | 123..775 | 100 | <- | Minus |
arm_2L | 12692717..12692822 | 17..122 | 100 | | Minus |
BS13171.3prime Sequence
808 bp (729 high quality bases) assembled on 2006-10-13
> BS13171.3prime
ATGGTCTAGAAAGCTTTTAACTGAAGGTGTTGACAATATCGTCGATCTTC
AAGATCGATCGAATCGTCTCCGTGGCCAGGGTGATCGACGAAATACTGAC
CAGCAGCGGCTGCACAACGTTCTCCGCGAAAATGTCTGTGATGGCGCCCT
TGCGCACATTAATACCGGCGTTCTTCTCACCCTGAGCGTGGCGGTTGCGT
AGCTCCGTGACCGTGGCAATGGGATTCAAACCGGCGTTCTCAGCCAGAGT
GGAGGGAATCACCTCCAAAGCATCGGCAAATGCACGGAAGCAATACGCAT
CCACACCCTCCACGGTTTGTGCCAATGCGGCTAGCTGCAGGGCCATCTCA
ATCTCGGGCGCACCACCGCCGACAATCTGGGCGCGCAGCTTCACCAGGCA
ACGGACGACACAGAGGGCATCGTGCAGGGAGCGAGCAGCCTCCTCGAGCA
CCAGCTTGTTGGATCCGCGGCAGATGATCGAGACAGTGCGTCCCATGTTC
TGAATGCCGGTGATCTTCACAAACTTGTTGGTACCACTGGCCACCTCCTC
GACCAGATCGGCACTGGAAAGGTTCTCGGCTGTGAAGTGATCCAACGAAG
CGATCGGTCGGCAGTGCAGGGTCTTGCACACGAACTCAATATCCTCGCGC
TCCACATCCTTAACGACCATGCACTTGATCTTGTCCAGGAAATGCTGAGC
CAGATCAGAGACAGCATCGCGCAAGATAGACTTCTGAACGAGAAGAACAT
TGCATCCTGACTTCTTGATCTGCTTGACAATGTTCAGGATGTATGAACGC
TCCTCCTT
BS13171.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:35:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5525-PA | 1602 | CG5525-RA | 811..1602 | 808..17 | 3935 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:09:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5525-RA | 1916 | CG5525-RA | 923..1714 | 808..17 | 3945 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:09:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12690617..12691304 | 33..720 | 3425 | 99.9 | Plus |
2L | 23513712 | 2L | 12691363..12691451 | 720..808 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 02:09:06 has no hits.
BS13171.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:58 Download gff for
BS13171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5525-PA | 811..1602 | 17..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:08:23 Download gff for
BS13171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5525-RA | 923..1716 | 13..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:02:53 Download gff for
BS13171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5525-RA | 923..1716 | 13..808 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:02:53 Download gff for
BS13171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12690619..12691303 | 35..719 | 99 | <- | Plus |
2L | 12691363..12691451 | 720..808 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:08:23 Download gff for
BS13171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12690619..12691303 | 35..719 | 99 | <- | Plus |
arm_2L | 12691363..12691451 | 720..808 | 100 | | Plus |
BS13171.5prime Sequence
720 bp (718 high quality bases) assembled on 2006-10-13
> BS13171.5prime
GAAGTTATCAGTCGACATGGCGCCCAAGGCAGCAGCTGTCAACATCAAGC
CAACGGCCAAGGCCTTCAAGGACAAGTCGAAGCCCACCGATGTGCGTTTG
TCCAACATCCAGGCGGCCAAAGCCGTTTCCGATGCTATCCGCACCAGTTT
GGGCCCCCGCGGCATGGACAAGATGATCCAGGCCGGCAACGGCGAGGTGT
CCATCACCAACGATGGCGCCACCATCCTGAAGCAGATGAATGTACTGCAC
CCGGCTGCCAAGATGCTGGTGGAGCTGTCGCGTGCCCAGGATGTGGCCGC
TGGTGACGGCACCACCTCCGTGGTTGTCATTGCCGGAGCTCTGCTTGAGG
CGTGCGAGAAGTTGCTGCAGAAGGGTCTGCATCCCACGGCCATTTCGGAC
TCGTTCCAGCGCTGCTCGAACAAGGCCGTCGAGATTCTTAAACAGATGTC
CACTCCCATCGAGCTGGACGACCGCGAGACGCTGATCAAGAGCGCCTCCA
CCTCGTTGAACTCCAAGGTGGTGTCGCAGCAGAGCAGCCTGCTGGCCCCC
ATTGCCGTGGATGCCGTGCTGAAGGTTACGGATCCCGGCAAGGAAACCTC
TGTGGATCTCAAGAACATCAAGGTCATCTCCAGCCTGGGTGGCACTGTTG
AGGACACCGAGCTGGTCGATGGATTGGTCTTCACCTGCCGCTCTGCCGGA
TCCAACGCTCCCAAGCGCAT
BS13171.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5525-PA | 1602 | CG5525-RA | 1..704 | 17..720 | 3520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:50:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5525-RA | 1916 | CG5525-RA | 113..816 | 17..720 | 3520 | 100 | Plus |
Tcp-1eta-RA | 1964 | CG8351-RA | 223..353 | 143..273 | 205 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:50:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12691620..12692219 | 720..121 | 3000 | 100 | Minus |
2L | 23513712 | 2L | 12692717..12692822 | 122..17 | 530 | 100 | Minus |
3R | 32079331 | 3R | 8801964..8802094 | 143..273 | 205 | 77.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:50:32 has no hits.
BS13171.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:59 Download gff for
BS13171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5525-PA | 1..704 | 17..720 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:46:59 Download gff for
BS13171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5525-RA | 113..816 | 17..720 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:18:42 Download gff for
BS13171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5525-RA | 113..816 | 17..720 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:18:42 Download gff for
BS13171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12691620..12692217 | 123..720 | 100 | <- | Minus |
2L | 12692717..12692822 | 17..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:46:59 Download gff for
BS13171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12691620..12692217 | 123..720 | 100 | <- | Minus |
arm_2L | 12692717..12692822 | 17..122 | 100 | | Minus |
BS13171.pep Sequence
Translation from 16 to 1617
> BS13171.pep
MAPKAAAVNIKPTAKAFKDKSKPTDVRLSNIQAAKAVSDAIRTSLGPRGM
DKMIQAGNGEVSITNDGATILKQMNVLHPAAKMLVELSRAQDVAAGDGTT
SVVVIAGALLEACEKLLQKGLHPTAISDSFQRCSNKAVEILKQMSTPIEL
DDRETLIKSASTSLNSKVVSQQSSLLAPIAVDAVLKVTDPGKETSVDLKN
IKVISSLGGTVEDTELVDGLVFTCRSAGSNAPKRIEKAKIGLIQFCISAP
KTDMDHNVIVSDYAAMDRVLKEERSYILNIVKQIKKSGCNVLLVQKSILR
DAVSDLAQHFLDKIKCMVVKDVEREDIEFVCKTLHCRPIASLDHFTAENL
SSADLVEEVASGTNKFVKITGIQNMGRTVSIICRGSNKLVLEEAARSLHD
ALCVVRCLVKLRAQIVGGGAPEIEMALQLAALAQTVEGVDAYCFRAFADA
LEVIPSTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGAITDIFAEN
VVQPLLVSISSITLATETIRSILKIDDIVNTFS*
BS13171.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5525-PA | 533 | CG5525-PA | 1..533 | 1..533 | 2625 | 100 | Plus |
Cct5-PB | 512 | CG8439-PB | 4..504 | 26..528 | 823 | 37.6 | Plus |
Cct5-PA | 542 | CG8439-PA | 32..534 | 24..528 | 820 | 37.5 | Plus |
T-cp1-PA | 557 | CG5374-PA | 20..534 | 26..529 | 713 | 31.9 | Plus |
T-cp1-PB | 557 | CG5374-PB | 20..534 | 26..529 | 713 | 31.9 | Plus |