Clone BS13171 Report

Search the DGRC for BS13171

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:131
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG5525-RA
Protein status:BS13171.pep: full length peptide match
Sequenced Size:1634

Clone Sequence Records

BS13171.complete Sequence

1634 bp assembled on 2009-12-07

GenBank Submission: KX802904

> BS13171.complete
GAAGTTATCAGTCGACATGGCGCCCAAGGCAGCAGCTGTCAACATCAAGC
CAACGGCCAAGGCCTTCAAGGACAAGTCGAAGCCCACCGATGTGCGTTTG
TCCAACATCCAGGCGGCCAAAGCCGTTTCCGATGCTATCCGCACCAGTTT
GGGCCCCCGCGGCATGGACAAGATGATCCAGGCCGGCAACGGCGAGGTGT
CCATCACCAACGATGGCGCCACCATCCTGAAGCAGATGAATGTACTGCAC
CCGGCTGCCAAGATGCTGGTGGAGCTGTCGCGTGCCCAGGATGTGGCCGC
TGGTGACGGCACCACCTCCGTGGTTGTCATTGCCGGAGCTCTGCTTGAGG
CGTGCGAGAAGTTGCTGCAGAAGGGTCTGCATCCCACGGCCATTTCGGAC
TCGTTCCAGCGCTGCTCGAACAAGGCCGTCGAGATTCTTAAACAGATGTC
CACTCCCATCGAGCTGGACGACCGCGAGACGCTGATCAAGAGCGCCTCCA
CCTCGTTGAACTCCAAGGTGGTGTCGCAGCAGAGCAGCCTGCTGGCCCCC
ATTGCCGTGGATGCCGTGCTGAAGGTTACGGATCCCGGCAAGGAAACCTC
TGTGGATCTCAAGAACATCAAGGTCATCTCCAGCCTGGGTGGCACTGTTG
AGGACACCGAGCTGGTCGATGGATTGGTCTTCACCTGCCGCTCTGCCGGA
TCCAACGCTCCCAAGCGCATTGAGAAGGCCAAGATCGGTCTTATCCAGTT
CTGCATTTCGGCCCCCAAGACCGATATGGATCACAATGTGATTGTATCGG
ATTACGCTGCCATGGATCGTGTGCTCAAGGAGGAGCGTTCATACATCCTG
AACATTGTCAAGCAGATCAAGAAGTCAGGATGCAATGTTCTTCTCGTTCA
GAAGTCTATCTTGCGCGATGCTGTCTCTGATCTGGCTCAGCATTTCCTGG
ACAAGATCAAGTGCATGGTCGTTAAGGATGTGGAGCGCGAGGATATTGAG
TTCGTGTGCAAGACCCTGCACTGCCGACCGATCGCTTCGTTGGATCACTT
CACAGCCGAGAACCTTTCCAGTGCCGATCTGGTCGAGGAGGTGGCCAGTG
GTACCAACAAGTTTGTGAAGATCACCGGCATTCAGAACATGGGACGCACT
GTCTCGATCATCTGCCGCGGATCCAACAAGCTGGTGCTCGAGGAGGCTGC
TCGCTCCCTGCACGATGCCCTCTGTGTCGTCCGTTGCCTGGTGAAGCTGC
GCGCCCAGATTGTCGGCGGTGGTGCGCCCGAGATTGAGATGGCCCTGCAG
CTAGCCGCATTGGCACAAACCGTGGAGGGTGTGGATGCGTATTGCTTCCG
TGCATTTGCCGATGCTTTGGAGGTGATTCCCTCCACTCTGGCTGAGAACG
CCGGTTTGAATCCCATTGCCACGGTCACGGAGCTACGCAACCGCCACGCT
CAGGGTGAGAAGAACGCCGGTATTAATGTGCGCAAGGGCGCCATCACAGA
CATTTTCGCGGAGAACGTTGTGCAGCCGCTGCTGGTCAGTATTTCGTCGA
TCACCCTGGCCACGGAGACGATTCGATCGATCTTGAAGATCGACGATATT
GTCAACACCTTCAGTTAAAAGCTTTCTAGACCAT

BS13171.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5525-RA 1602 CG5525-PA 1..1602 17..1618 7995 99.9 Plus
Tcp-1eta-RA 1635 CG8351-PA 109..239 143..273 205 77.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5525-RA 1916 CG5525-RA 113..1714 17..1618 7995 99.9 Plus
Tcp-1eta-RA 1964 CG8351-RA 223..353 143..273 205 77.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12690617..12691304 1602..915 3425 99.9 Minus
2L 23513712 2L 12691565..12692219 775..121 3275 100 Minus
2L 23513712 2L 12691363..12691502 915..776 700 100 Minus
2L 23513712 2L 12692717..12692822 122..17 530 100 Minus
3R 32079331 3R 8801964..8802094 143..273 205 77.1 Plus
Blast to na_te.dros performed on 2014-11-28 01:41:26 has no hits.

BS13171.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:38 Download gff for BS13171.complete
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 1..1602 17..1618 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:32 Download gff for BS13171.complete
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 116..1715 17..1616 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:51 Download gff for BS13171.complete
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 113..1712 17..1616 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:18 Download gff for BS13171.complete
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 116..1715 17..1616 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:35 Download gff for BS13171.complete
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 113..1712 17..1616 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:35 Download gff for BS13171.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12690540..12690555 1601..1616 100 <- Minus
2L 12690619..12691303 916..1600 99 <- Minus
2L 12691363..12691502 776..915 100 <- Minus
2L 12691565..12692217 123..775 100 <- Minus
2L 12692717..12692822 17..122 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:51 Download gff for BS13171.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12690540..12690555 1601..1616 100 <- Minus
arm_2L 12690619..12691303 916..1600 99 <- Minus
arm_2L 12691363..12691502 776..915 100 <- Minus
arm_2L 12691565..12692217 123..775 100 <- Minus
arm_2L 12692717..12692822 17..122 100   Minus

BS13171.3prime Sequence

808 bp (729 high quality bases) assembled on 2006-10-13

> BS13171.3prime
ATGGTCTAGAAAGCTTTTAACTGAAGGTGTTGACAATATCGTCGATCTTC
AAGATCGATCGAATCGTCTCCGTGGCCAGGGTGATCGACGAAATACTGAC
CAGCAGCGGCTGCACAACGTTCTCCGCGAAAATGTCTGTGATGGCGCCCT
TGCGCACATTAATACCGGCGTTCTTCTCACCCTGAGCGTGGCGGTTGCGT
AGCTCCGTGACCGTGGCAATGGGATTCAAACCGGCGTTCTCAGCCAGAGT
GGAGGGAATCACCTCCAAAGCATCGGCAAATGCACGGAAGCAATACGCAT
CCACACCCTCCACGGTTTGTGCCAATGCGGCTAGCTGCAGGGCCATCTCA
ATCTCGGGCGCACCACCGCCGACAATCTGGGCGCGCAGCTTCACCAGGCA
ACGGACGACACAGAGGGCATCGTGCAGGGAGCGAGCAGCCTCCTCGAGCA
CCAGCTTGTTGGATCCGCGGCAGATGATCGAGACAGTGCGTCCCATGTTC
TGAATGCCGGTGATCTTCACAAACTTGTTGGTACCACTGGCCACCTCCTC
GACCAGATCGGCACTGGAAAGGTTCTCGGCTGTGAAGTGATCCAACGAAG
CGATCGGTCGGCAGTGCAGGGTCTTGCACACGAACTCAATATCCTCGCGC
TCCACATCCTTAACGACCATGCACTTGATCTTGTCCAGGAAATGCTGAGC
CAGATCAGAGACAGCATCGCGCAAGATAGACTTCTGAACGAGAAGAACAT
TGCATCCTGACTTCTTGATCTGCTTGACAATGTTCAGGATGTATGAACGC
TCCTCCTT

BS13171.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5525-PA 1602 CG5525-RA 811..1602 808..17 3935 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5525-RA 1916 CG5525-RA 923..1714 808..17 3945 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12690617..12691304 33..720 3425 99.9 Plus
2L 23513712 2L 12691363..12691451 720..808 445 100 Plus
Blast to na_te.dros performed on 2015-02-05 02:09:06 has no hits.

BS13171.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:58 Download gff for BS13171.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-PA 811..1602 17..808 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:08:23 Download gff for BS13171.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 923..1716 13..808 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:02:53 Download gff for BS13171.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 923..1716 13..808 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:02:53 Download gff for BS13171.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12690619..12691303 35..719 99 <- Plus
2L 12691363..12691451 720..808 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:08:23 Download gff for BS13171.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12690619..12691303 35..719 99 <- Plus
arm_2L 12691363..12691451 720..808 100   Plus

BS13171.5prime Sequence

720 bp (718 high quality bases) assembled on 2006-10-13

> BS13171.5prime
GAAGTTATCAGTCGACATGGCGCCCAAGGCAGCAGCTGTCAACATCAAGC
CAACGGCCAAGGCCTTCAAGGACAAGTCGAAGCCCACCGATGTGCGTTTG
TCCAACATCCAGGCGGCCAAAGCCGTTTCCGATGCTATCCGCACCAGTTT
GGGCCCCCGCGGCATGGACAAGATGATCCAGGCCGGCAACGGCGAGGTGT
CCATCACCAACGATGGCGCCACCATCCTGAAGCAGATGAATGTACTGCAC
CCGGCTGCCAAGATGCTGGTGGAGCTGTCGCGTGCCCAGGATGTGGCCGC
TGGTGACGGCACCACCTCCGTGGTTGTCATTGCCGGAGCTCTGCTTGAGG
CGTGCGAGAAGTTGCTGCAGAAGGGTCTGCATCCCACGGCCATTTCGGAC
TCGTTCCAGCGCTGCTCGAACAAGGCCGTCGAGATTCTTAAACAGATGTC
CACTCCCATCGAGCTGGACGACCGCGAGACGCTGATCAAGAGCGCCTCCA
CCTCGTTGAACTCCAAGGTGGTGTCGCAGCAGAGCAGCCTGCTGGCCCCC
ATTGCCGTGGATGCCGTGCTGAAGGTTACGGATCCCGGCAAGGAAACCTC
TGTGGATCTCAAGAACATCAAGGTCATCTCCAGCCTGGGTGGCACTGTTG
AGGACACCGAGCTGGTCGATGGATTGGTCTTCACCTGCCGCTCTGCCGGA
TCCAACGCTCCCAAGCGCAT

BS13171.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5525-PA 1602 CG5525-RA 1..704 17..720 3520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5525-RA 1916 CG5525-RA 113..816 17..720 3520 100 Plus
Tcp-1eta-RA 1964 CG8351-RA 223..353 143..273 205 77.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12691620..12692219 720..121 3000 100 Minus
2L 23513712 2L 12692717..12692822 122..17 530 100 Minus
3R 32079331 3R 8801964..8802094 143..273 205 77.1 Plus
Blast to na_te.dros performed on 2015-02-13 15:50:32 has no hits.

BS13171.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:37:59 Download gff for BS13171.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-PA 1..704 17..720 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:46:59 Download gff for BS13171.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 113..816 17..720 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:18:42 Download gff for BS13171.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 113..816 17..720 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:18:42 Download gff for BS13171.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12691620..12692217 123..720 100 <- Minus
2L 12692717..12692822 17..122 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:46:59 Download gff for BS13171.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12691620..12692217 123..720 100 <- Minus
arm_2L 12692717..12692822 17..122 100   Minus

BS13171.pep Sequence

Translation from 16 to 1617

> BS13171.pep
MAPKAAAVNIKPTAKAFKDKSKPTDVRLSNIQAAKAVSDAIRTSLGPRGM
DKMIQAGNGEVSITNDGATILKQMNVLHPAAKMLVELSRAQDVAAGDGTT
SVVVIAGALLEACEKLLQKGLHPTAISDSFQRCSNKAVEILKQMSTPIEL
DDRETLIKSASTSLNSKVVSQQSSLLAPIAVDAVLKVTDPGKETSVDLKN
IKVISSLGGTVEDTELVDGLVFTCRSAGSNAPKRIEKAKIGLIQFCISAP
KTDMDHNVIVSDYAAMDRVLKEERSYILNIVKQIKKSGCNVLLVQKSILR
DAVSDLAQHFLDKIKCMVVKDVEREDIEFVCKTLHCRPIASLDHFTAENL
SSADLVEEVASGTNKFVKITGIQNMGRTVSIICRGSNKLVLEEAARSLHD
ALCVVRCLVKLRAQIVGGGAPEIEMALQLAALAQTVEGVDAYCFRAFADA
LEVIPSTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGAITDIFAEN
VVQPLLVSISSITLATETIRSILKIDDIVNTFS*

BS13171.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5525-PA 533 CG5525-PA 1..533 1..533 2625 100 Plus
Cct5-PB 512 CG8439-PB 4..504 26..528 823 37.6 Plus
Cct5-PA 542 CG8439-PA 32..534 24..528 820 37.5 Plus
T-cp1-PA 557 CG5374-PA 20..534 26..529 713 31.9 Plus
T-cp1-PB 557 CG5374-PB 20..534 26..529 713 31.9 Plus