Clone Sequence Records
BS13180.complete Sequence
2711 bp assembled on 2009-12-07
GenBank Submission: KX805205
> BS13180.complete
GAAGTTATCAGTCGACATGGAAAAGTCGGAGGAAAAGACATGCGTCGTCT
GTGGCACTCCGACCAGATTGATGTGCCAGCGGTGTGGAGAACCGTACTGC
AATGAAAAGTGCCAGAAATTGGATTGGCAGAGGCACAGGCAGGTGTGCAT
CATTATGCCACCCTTGGTGGAGTGCCGGCCTCTTCAACCGGCGTTGAATC
CAATCCAGAGCGTAGAGAACCAAGTTGCTCTGGCTAAAACTCGCACTAAA
TCGCCAATCCCATGTGTGGAGCCCACAGTTGCTGTGCCGAACAAGCCGGA
TCTATCGGAAAACTGGCGCAAACATTTGCTGCCGTCGGGCATGGAGTTTT
TCAAGTGCCGCGTGACTTTCATGGAGAACGATGGACCCATTTGGGTGGTG
CACGTGGCGAATGTGGAGGCCATTGAGCGAATGACGGTCAACATGCAGCG
CTGCATGCAGAATAAGAAGATGATTCGTATGGAAGGAGTGCGGGAGGACA
CCCTCGTGGCCATCAGTGTGGGCGACAAGGTCCATCGCGGTCATGTTTTG
ACGGTTTGCCAAAAGAAGCAAGAAGCCAATGTCCGTATGATTGACCACGG
TCAGATAGTAGCTACACCGTTTCGGGATATCTACACCATTGTGCCCAAGA
TGGCCGAAAGCAAGGCGTTCGCTTTCCGTGTTCAATTGCCCACGAACACT
GGAGTTCAGGACATTAAGAACTTGACGCTCCGTATGTTGGGAACCAAAAC
CAGCGACGGAGCTTATCACGTCCATCTAAAGCCCAAGATGATAATACCAC
TAAGTTTGCCCTTGGAGATGCTGCAGCTTAATCCAGAAGTCAAAGTCATC
CGGGTCTTTAAGGCAAATCCAAAGCATAACGAACCGCAGCTGGCCCTACT
CCAGATCAACGTGATGGGCCATGTCAACGCAGACTTAAACAACCGCATAG
CCGAGAAGCCAAGACAGCCATTCACGCTGCCCTTCCCCGAGCAGAAATCC
ATCTTCTTTGCGGCCACCCGCACTAAAAATGGTTATCGGCGAGCTTTCCT
ATTGGATCATATCATGAAACCGAGGCCAACCTATTTGGTTTACGAAATGG
ACGAGGGTAGAGTGTCCATAGCCACCGATCTGAGTCGTATTCCCAGCGAA
CTACTTGGCCTGCCCAGTCGAGTGTTTGCCGCTCAGCTGGAGGACTCCGT
ACCCGAGGAGCTTGAGACTCAAGGTGCAGAACTCACGGTCAAGTTTAAGC
TGGATAATAAGCCGCCCAAGGAAAAGTTACGCGCGGCGAATGCCGCCTTG
AATTCCAAGGGCGAGCAGATATGTATGGCCCGTCTGATCACTTTCTTGGG
TCAGATTTCATATTTAGGCCACAAGTACTGGCGTGAACCCATCGTCCATG
ATTCCATCGTATTCATTTCCCACTTGGTCAGCTTTAAGGAGGTATACATC
AGCACTCCAGACGCCAAGCAGTATGCGGAAATTTTCAAGCGCCTGGAGTA
CAAGTGCGCTACCATTACCAAATCTAGTGATGTTTCCGTTGGCAGCATCG
TGCTCGTTGTCTCCAAGCAGATGGGTCACTTCCGGGGCGAGATATTGAGT
AAGGATAGTGGATTGTTCGAAGTAATGAACGTTGATACTGGTGCCACCCA
AAAGGTGGAGTTGGCGGAAATACGCAGCTCCTGTCGCTTCCTGGAGAATT
TGCCCGTATGTCTGATGCGTGTACAGTTGCAGAATGTCTGCAATATTCCG
GATGCAGCTGTGCCAGTTAACAATGCGGCCATTCAAATGCTGCACAAGCT
CTGCGCCCAAAAAGAACTGCTAAAATTGAACATGGTAGATGCAACTACAT
CGACCGTGGACCTGCTGTTCAGCTCCGGCGATTCGCGCTCCTTGACGACC
CAAATGTTGCCTCTTATATTTACACCGGTACAGGAAAAAGCAGAAGTTGC
ACCACCGAAGGCTGCTTCTACTCCGAGTCAATTGCCTGTTGTAACTCACA
AACAGCAGAAGGTGTCTCCACAGTCTCTACTTCTGCTGGATCTGCCTCCA
CTGCCGCCCTCTCCACCGGAGTCGCCTTTTCCTGCCGACGTGACAAGTAC
AAAGTCAGCTTCCCACGTTCTGCCCATTAAACGCTTCCTTTTCGACGCTT
TGCCCAAGAATCTAGCTCCTTTAGGCGACAAGGTCAACCTAATCCTTATG
AACGCTGACGGATTGCCGCAAACTGGCTACATCACCGCCGCCTACTTCAA
GGACGAAAAGGCGGCCAAGGAATTTGAAAAAATCCTTAGCTTGACATCAA
GTCAGGGAGCATGTGACCACAATGTTGTTCCGGGTTACGTACCAAACGTT
GGTGAACTGTGCCTGGCGATCTACAGCGAAGATAAGAACTGGTATCGCGG
AGTCTGCCAGGAGGTTAAGGACAATATGGTCAAAATTCTATTCTGCGATT
TTGGAAATACGGAATATGTGGCCGTGAGACACGTGAAACCGATTTCACAG
GATTTGCTAATTGCCGTCAATGTCACAAAGTGCTATATAAATGGCTTCGA
CAAATCAAAGAATTTTGCGGCTCTGGAGCAGTTTCTTGTGCGTAAGATTC
GATTCTTATGCGGAGTTAAGAAAGGCCCTGAACCCGATACTCGTCTCATT
ACAATTCCGGATATGGAGACTATTCTAAACACACCAGTTGCATAAAAGCT
TTCTAGACCAT
BS13180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:01:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9925-RA | 2679 | CG9925-PA | 1..2679 | 17..2695 | 13395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9925-RA | 3193 | CG9925-RA | 301..2979 | 17..2695 | 13395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13962216..13963647 | 1591..160 | 7160 | 100 | Minus |
| 3R | 32079331 | 3R | 13961396..13962152 | 2346..1590 | 3785 | 100 | Minus |
| 3R | 32079331 | 3R | 13961138..13961335 | 2544..2347 | 990 | 100 | Minus |
| 3R | 32079331 | 3R | 13960926..13961078 | 2695..2543 | 765 | 100 | Minus |
| 3R | 32079331 | 3R | 13963732..13963874 | 159..17 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:01:30 has no hits.
BS13180.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:36 Download gff for
BS13180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9925-RA | 296..2972 | 17..2693 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:52 Download gff for
BS13180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9925-RA | 296..2972 | 17..2693 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:15:57 Download gff for
BS13180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9925-RA | 296..2972 | 17..2693 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:13 Download gff for
BS13180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9925-RA | 301..2977 | 17..2693 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:13 Download gff for
BS13180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13960928..13961077 | 2544..2693 | 100 | <- | Minus |
| 3R | 13961139..13961335 | 2347..2543 | 100 | <- | Minus |
| 3R | 13961396..13962150 | 1592..2346 | 100 | <- | Minus |
| 3R | 13962216..13963647 | 160..1591 | 100 | <- | Minus |
| 3R | 13963732..13963874 | 17..159 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:52 Download gff for
BS13180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9786861..9787057 | 2347..2543 | 100 | <- | Minus |
| arm_3R | 9786650..9786799 | 2544..2693 | 100 | <- | Minus |
| arm_3R | 9787118..9787872 | 1592..2346 | 100 | <- | Minus |
| arm_3R | 9787938..9789369 | 160..1591 | 100 | <- | Minus |
| arm_3R | 9789454..9789596 | 17..159 | 100 | | Minus |
BS13180.3prime Sequence
670 bp (628 high quality bases) assembled on 2006-10-13
> BS13180.3prime
ATGGTCTAGAAAGCTTTTATGCAACTGGTGTGTTTAGAATAGTCTCCATA
TCCGGAATTGTAATGAGACGAGTATCGGGTTCAGGGCCTTTCTTAACTCC
GCATAAGAATCGAATCTTACGCACAAGAAACTGCTCCAGAGCCGCAAAAT
TCTTTGATTTGTCGAAGCCATTTATATAGCACTTTGTGACATTGACGGCA
ATTAGCAAATCCTGTGAAATCGGTTTCACGTGTCTCACGGCCACATATTC
CGTATTTCCAAAATCGCAGAATAGAATTTTGACCATATTGTCCTTAACCT
CCTGGCAGACTCCGCGATACCAGTTCTTATCTTCGCTGTAGATCGCCAGG
CACAGTTCACCAACGTTTGGTACGTAACCCGGAACAACATTGTGGTCACA
TGCTCCCTGACTTGATGTCAAGCTAAGGATTTTTTCAAATTCCTTGGCCG
CCTTTTCGTCCTTGAAGTAGGCGGCGGTGATGTAGCCAGTTTGCGGCAAT
CCGTCAGCGTTCATAAGGATTAGGTTGACCTTGTCGCCTAAAGGAGCTAG
ATTCTTGGGCAAAGCGTCGAAAAGGAAGCGTTTAATGGGCAGAACGTGGG
AAGCTGACTTTGTACTTGTCACGTCGGCAGGAAAAGGCGACTCCGGTGGA
GAGGGCGGCAGTGGAGGCAG
BS13180.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9925-PA | 2679 | CG9925-RA | 2026..2679 | 670..17 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:50:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9925-RA | 3193 | CG9925-RA | 2326..2979 | 670..17 | 3270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:50:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13961396..13961700 | 366..670 | 1525 | 100 | Plus |
| 3R | 32079331 | 3R | 13961138..13961335 | 168..365 | 990 | 100 | Plus |
| 3R | 32079331 | 3R | 13960926..13961078 | 17..169 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:50:41 has no hits.
BS13180.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:10 Download gff for
BS13180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9925-PA | 2026..2679 | 17..670 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:47:03 Download gff for
BS13180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9925-RA | 2321..2977 | 10..670 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:19:22 Download gff for
BS13180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9925-RA | 2326..2982 | 10..670 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:19:22 Download gff for
BS13180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13961396..13961700 | 366..670 | 100 | | Plus |
| 3R | 13960923..13961077 | 10..168 | 97 | <- | Plus |
| 3R | 13961139..13961335 | 169..365 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:47:03 Download gff for
BS13180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9786645..9786799 | 10..168 | 97 | <- | Plus |
| arm_3R | 9786861..9787057 | 169..365 | 100 | <- | Plus |
| arm_3R | 9787118..9787422 | 366..670 | 100 | | Plus |
BS13180.5prime Sequence
668 bp (558 high quality bases) assembled on 2006-10-13
> BS13180.5prime
GAAGTTATCAGTCGACATGGAAAAGTCGGAGGAAAAGACATGCGTCGTCT
GTGGCACTCCGACCAGATTGATGTGCCAGCGGTGTGGAGAACCGTACTGC
AATGAAAAGTGCCAGAAATTGGATTGGCAGAGGCACAGGCAGGTGTGCAT
CATTATGCCACCCTTGGTGGAGTGCCGGCCTCTTCAACCGGCGTTGAATC
CAATCCAGAGCGTAGAGAACCAAGTTGCTCTGGCTAAAACTCGCACTAAA
TCGCCAATCCCATGTGTGGAGCCCACAGTTGCTGTGCCGAACAAGCCGGA
TCTATCGGAAAACTGGCGCAAACATTTGCTGCCGTCGGGCATGGAGTTTT
TCAAGTGCCGCGTGACTTTCATGGAGAACGATGGACCCATTTGGGTGGTG
CACGTGGCGAATGTGGAGGCCATTGAGCGAATGACGGTCAACATGCAGCG
CTGCATGCAGAATAAGAAGATGATTCGTATGGAAGGAGTGCGGGAGGACA
CCCTCGTGGCCATCAGTGTGGGCGACAAGGTCCATCGCGGTCATGTTTTG
ACGGTTTGCCAAAAGAAGCAAGAAGCCAATGTCCGTATGATTGACCACGG
TCAGATAGTAGCTACACCGTTTCGGGATATCTACACCATTGTGCCCAAGA
TGGCCGAAAGCCAGGCGT
BS13180.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:37:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9925-PA | 2679 | CG9925-RA | 1..652 | 17..668 | 3235 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:02:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9925-RA | 3193 | CG9925-RA | 301..952 | 17..668 | 3245 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:02:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13963139..13963647 | 668..160 | 2530 | 99.8 | Minus |
| 3R | 32079331 | 3R | 13963732..13963874 | 159..17 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:02:44 has no hits.
BS13180.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:11 Download gff for
BS13180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9925-PA | 1..652 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:40:35 Download gff for
BS13180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9925-RA | 293..947 | 14..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:12:41 Download gff for
BS13180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9925-RA | 298..952 | 14..668 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:12:41 Download gff for
BS13180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13963139..13963647 | 160..668 | 99 | <- | Minus |
| 3R | 13963732..13963877 | 14..159 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:40:35 Download gff for
BS13180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9788861..9789369 | 160..668 | 99 | <- | Minus |
| arm_3R | 9789454..9789599 | 14..159 | 99 | | Minus |
BS13180.pep Sequence
Translation from 16 to 2694
> BS13180.pep
MEKSEEKTCVVCGTPTRLMCQRCGEPYCNEKCQKLDWQRHRQVCIIMPPL
VECRPLQPALNPIQSVENQVALAKTRTKSPIPCVEPTVAVPNKPDLSENW
RKHLLPSGMEFFKCRVTFMENDGPIWVVHVANVEAIERMTVNMQRCMQNK
KMIRMEGVREDTLVAISVGDKVHRGHVLTVCQKKQEANVRMIDHGQIVAT
PFRDIYTIVPKMAESKAFAFRVQLPTNTGVQDIKNLTLRMLGTKTSDGAY
HVHLKPKMIIPLSLPLEMLQLNPEVKVIRVFKANPKHNEPQLALLQINVM
GHVNADLNNRIAEKPRQPFTLPFPEQKSIFFAATRTKNGYRRAFLLDHIM
KPRPTYLVYEMDEGRVSIATDLSRIPSELLGLPSRVFAAQLEDSVPEELE
TQGAELTVKFKLDNKPPKEKLRAANAALNSKGEQICMARLITFLGQISYL
GHKYWREPIVHDSIVFISHLVSFKEVYISTPDAKQYAEIFKRLEYKCATI
TKSSDVSVGSIVLVVSKQMGHFRGEILSKDSGLFEVMNVDTGATQKVELA
EIRSSCRFLENLPVCLMRVQLQNVCNIPDAAVPVNNAAIQMLHKLCAQKE
LLKLNMVDATTSTVDLLFSSGDSRSLTTQMLPLIFTPVQEKAEVAPPKAA
STPSQLPVVTHKQQKVSPQSLLLLDLPPLPPSPPESPFPADVTSTKSASH
VLPIKRFLFDALPKNLAPLGDKVNLILMNADGLPQTGYITAAYFKDEKAA
KEFEKILSLTSSQGACDHNVVPGYVPNVGELCLAIYSEDKNWYRGVCQEV
KDNMVKILFCDFGNTEYVAVRHVKPISQDLLIAVNVTKCYINGFDKSKNF
AALEQFLVRKIRFLCGVKKGPEPDTRLITIPDMETILNTPVA*
BS13180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:40:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9925-PA | 892 | CG9925-PA | 1..892 | 1..892 | 4634 | 100 | Plus |
