Clone BS13195 Report

Search the DGRC for BS13195

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:131
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG8738-RA
Protein status:BS13195.pep: full length peptide match
Sequenced Size:1412

Clone Sequence Records

BS13195.3prime Sequence

619 bp (584 high quality bases) assembled on 2006-10-13

> BS13195.3prime
ATGGTCTAGAAAGCTTCTAAAAGCCCTCTATTAATGGGAACCCGCTCTTC
GTCACCTGCTCATCGATCCAGTTCCTCAAATAGGCCACATTCGTGTAGGC
CGCAGGCACATCCTTCTCGGCACATTCGATGCCCCAGGACACGAGGCCCA
CCAGCTGGTAGCGATCCTTCTGCCCAGGCAAAGTGCAAAACAACGGGGAG
CCGCCGTCGCCCATGCAGGTGTCCTTACCCTTTACGCCGCCGGCACAAGT
GAAGCTCGGATGGAGATTGTAGCGACGCCCCAGGACAGTGTGCCGCAACA
GCCGTTGGCAGGACTCGTGGTCCACCGCCGGCAGCTCGATGCGCTTTAGC
AGGTTTTCCATGGTGCGGGACGTGCTGTACCTGAGCCCCCACCCAGTGGC
CAAGCAGCTTGCACTCCGCAACTCAGCCTCCATTTGGGGCGTCTCCGGTG
GCGGCAGGCAGATGGGCTGTATGTGCGGGGCCACCTGGAAAGGTCGCTCC
AGCACCACCAGAGCAATGTCATTGTATAGGGTCAGGTTGTTGAAGTTCTC
GTGGCGATGCAGCTCGCTGATGGCCCGCATCTGGTAAGGATGCAGCTCTG
TCTGGCTGTTAAGGTCCCA

BS13195.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8738-PA 1380 CG8738-RA 778..1380 619..17 2990 99.8 Minus
CG8586-PA 1335 CG8586-RA 1188..1224 167..131 135 94.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8738-RA 1629 CG8738-RA 969..1571 619..17 3000 99.8 Minus
CG8586-RC 2473 CG8586-RC 1228..1336 226..118 275 83.5 Minus
CG8586-RB 1625 CG8586-RB 1323..1431 226..118 275 83.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8697923..8698525 619..17 3000 99.8 Minus
2R 25286936 2R 8693933..8694041 118..226 275 83.5 Plus
Blast to na_te.dros performed on 2015-02-13 06:50:58 has no hits.

BS13195.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:21 Download gff for BS13195.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8738-PA 779..1380 17..618 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:37:01 Download gff for BS13195.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8738-RA 970..1574 11..618 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:32:12 Download gff for BS13195.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8738-RA 970..1574 11..618 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:32:12 Download gff for BS13195.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8697924..8698525 17..618 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:37:01 Download gff for BS13195.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4585429..4586030 17..618 99 -> Minus

BS13195.5prime Sequence

586 bp (516 high quality bases) assembled on 2006-10-13

> BS13195.5prime
GAAGTTATCAGTCGACATGAATGTGGAGCAGGTGTTGCTGATCAGTCTGG
CATTGATTTCCCTCGCACCGGCGATCCTCTCGATCCGCACCTGCGGGAGC
CACGAGGTCTGCGTTAGCAAGAAGAAGTGCGACGAGTCGGATGATTCCGG
CAAGGGGAAGCTGGTCAAGCGCATATTGGACAACAGCTGCGGGCGCGACT
TGGAGTGCTGCGATAGGGAGCAGTTGGAGAACTTTGAGGCCTATCAGGCC
GAGATCGAGTACCGGAATCAGCGACGAAAAAATATCTGGGCCTCCTCGGA
TAATCCCCTTGAAGGCGAACCGAAACCGAACCTCGTCGGCGCCAAGGAGG
ACGAGCCGGGCTACAAAAGCTGCGGCGTCAAGCGGGAGTGTGTTCCGCGG
CACCTCTGCTCCACCGGAGTGGTCAACGAGGATGGGAGGTACATCATCAA
GCCGCGCATTAACGAGGAGAGCAACTTCGGCTGCCGAGTCGTGGAGGAGT
GCTGCCCGTTGGGCGATCAAATAGAGGAGGGTCGCAATCCTATCCAGCGT
AACGTAAAGGATTTTCTGCTGAATGGATGCGGCTAT

BS13195.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8738-PA 1380 CG8738-RA 1..570 17..586 2800 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8738-RA 1629 CG8738-RA 186..761 11..586 2835 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8696613..8697121 11..519 2530 99.8 Plus
2R 25286936 2R 8697650..8697715 521..586 315 98.5 Plus
Blast to na_te.dros performed on 2015-02-11 04:16:50 has no hits.

BS13195.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:21 Download gff for BS13195.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8738-PA 1..570 17..586 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:07:14 Download gff for BS13195.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8738-RA 183..761 7..586 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:10:18 Download gff for BS13195.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8738-RA 183..761 7..586 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:10:18 Download gff for BS13195.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8696610..8697122 7..520 99 -> Plus
2R 8697650..8697715 521..586 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:07:14 Download gff for BS13195.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4584115..4584627 7..520 99 -> Plus
arm_2R 4585155..4585220 521..586 98   Plus

BS13195.complete Sequence

1412 bp assembled on 2009-08-26

GenBank Submission: KX800285

> BS13195.complete
GAAGTTATCAGTCGACATGAATGTGGAGCAGGTGTTGCTGATCAGTCTGG
CATTGATTTCCCTCGCACCGGCGATCCTCTCGATCCGCACCTGCGGGAGC
CACGAGGTCTGCGTTAGCAAGAAGAAGTGCGACGAGTCGGATGATTCCGG
CAAGGGGAAGCTGGTCAAGCGCATATTGGACAACAGCTGCGGGCGCGACT
TGGAGTGCTGCGATAGGGAGCAGTTGGAGAACTTTGAGGCCTATCAGGCC
GAGATCGAGTACCGGAATCAGCGACGAAAAAATATCTGGGCCTCCTCGGA
TAATCCCCTTGAAGGCGAACCGAAACCGAACCTCGTCGGCGCCAAGGAGG
ACGAGCCGGGCTACAAAAGCTGCGGCGTCAAGCGGGAGTGTGTTCCGCGG
CACCTCTGCTCCACCGGAGTGGTCAACGAGGATGGGAGGTACATCATCAA
GCCGCGCATTAACGAGGAGAGCAACTTCGGCTGCCGAGTCGTGGAGGAGT
GCTGCCCGTTGGGCGATCAGATAGAGGAGGGTCGCAATCCTATCCAGCGT
AACGTAAAGGATTTTCTGCTGAAGGGATGCGGCTATAGCAACCCGAAGGG
GCTCTACTACCAGCTGGATGGCTACAACAATGGCGAGTCCGTCTTCGCCG
AGTTCCCCTGGATGGTGGCGCTGATGGACATGGAAGGCAACTTCGTCTGC
GGCGGCACCCTCATCCACCCGCAGCTGGTGCTGACCAGTGCCCACAACGT
GTTCAACCGGAGTGAGGACTCGCTGCTGGTTCGAGCTGGTGACTGGGACC
TTAACAGCCAGACAGAGCTGCATCCCTACCAGATGCGGGCCATCAGCGAG
CTGCATCGCCACGAGAACTTCAACAACCTGACCCTATACAATGACATTGC
TCTGGTGGTGCTGGAGCGACCTTTCCAGGTGGCCCCGCACATACAGCCCA
TCTGCCTGCCGCCACCGGAGACGCCCCAAATGGAGGCTGAGTTGCGGAGT
GCAAGCTGCTTGGCCACTGGGTGGGGGCTCAGGTACAGCACGTCCCGCAC
CATGGAAAACCTGCTAAAGCGCATCGAGCTGCCGGCGGTGGACCACGAGT
CCTGCCAACGGCTGTTGCGGCACACTGTCCTGGGGCGTCGCTACAATCTC
CATCCGAGCTTCACTTGTGCCGGCGGCGTAAAGGGTAAGGACACCTGCAT
GGGCGACGGCGGCTCCCCGTTGTTTTGCACTTTGCCTGGGCAGAAGGATC
GCTACCAGCTGGTGGGCCTCGTGTCCTGGGGCATCGAATGTGCCGAGAAG
GATGTGCCTGCGGCCTACACGAATGTGGCCTATTTGAGGAACTGGATCGA
TGAGCAGGTGACGAAGAGCGGGTTCCCATTAATAGAGGGCTTTTAGAAGC
TTTCTAGACCAT

BS13195.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8738-RA 1380 CG8738-PA 1..1380 17..1396 6900 100 Plus
CG8586-RC 1335 CG8586-PC 1129..1237 1187..1295 275 83.5 Plus
CG8586-RB 1335 CG8586-PB 1129..1237 1187..1295 275 83.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8738-RA 1629 CG8738-RA 186..1571 11..1396 6915 99.9 Plus
CG8586-RC 2473 CG8586-RC 1228..1336 1187..1295 275 83.5 Plus
CG8586-RB 1625 CG8586-RB 1323..1431 1187..1295 275 83.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8697647..8698525 518..1396 4395 100 Plus
2R 25286936 2R 8696613..8697122 11..520 2535 99.8 Plus
2R 25286936 2R 8693933..8694041 1295..1187 275 83.5 Minus
Blast to na_te.dros performed on 2014-11-28 01:35:12 has no hits.

BS13195.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:29 Download gff for BS13195.complete
Subject Subject Range Query Range Percent Splice Strand
CG8738-RA 194..1573 17..1396 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:53 Download gff for BS13195.complete
Subject Subject Range Query Range Percent Splice Strand
CG8738-RA 192..1571 17..1396 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:05 Download gff for BS13195.complete
Subject Subject Range Query Range Percent Splice Strand
CG8738-RA 192..1571 17..1396 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:05 Download gff for BS13195.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8696619..8697122 17..520 100 -> Plus
2R 8697650..8698525 521..1396 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:53 Download gff for BS13195.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4584124..4584627 17..520 100 -> Plus
arm_2R 4585155..4586030 521..1396 100   Plus

BS13195.pep Sequence

Translation from 16 to 1395

> BS13195.pep
MNVEQVLLISLALISLAPAILSIRTCGSHEVCVSKKKCDESDDSGKGKLV
KRILDNSCGRDLECCDREQLENFEAYQAEIEYRNQRRKNIWASSDNPLEG
EPKPNLVGAKEDEPGYKSCGVKRECVPRHLCSTGVVNEDGRYIIKPRINE
ESNFGCRVVEECCPLGDQIEEGRNPIQRNVKDFLLKGCGYSNPKGLYYQL
DGYNNGESVFAEFPWMVALMDMEGNFVCGGTLIHPQLVLTSAHNVFNRSE
DSLLVRAGDWDLNSQTELHPYQMRAISELHRHENFNNLTLYNDIALVVLE
RPFQVAPHIQPICLPPPETPQMEAELRSASCLATGWGLRYSTSRTMENLL
KRIELPAVDHESCQRLLRHTVLGRRYNLHPSFTCAGGVKGKDTCMGDGGS
PLFCTLPGQKDRYQLVGLVSWGIECAEKDVPAAYTNVAYLRNWIDEQVTK
SGFPLIEGF*

BS13195.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8738-PA 459 CG8738-PA 1..459 1..459 2478 100 Plus
CG8586-PC 444 CG8586-PC 10..441 7..455 1046 45.4 Plus
CG8586-PB 444 CG8586-PB 10..441 7..455 1046 45.4 Plus
CG8586-PA 444 CG8586-PA 10..441 7..455 1046 45.4 Plus
CG5390-PB 406 CG5390-PB 29..394 89..448 741 39.8 Plus