Clone BS13196 Report

Search the DGRC for BS13196

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:131
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG13077-RA
Protein status:BS13196.pep: full length peptide match
Sequenced Size:842

Clone Sequence Records

BS13196.5prime Sequence

683 bp (679 high quality bases) assembled on 2006-10-13

> BS13196.5prime
GAAGTTATCAGTCGACATGTCCGAGAGTAAGCAGCCAGTGCTTAGTAGAA
CTCAGACATCCGCCGACTACGGCAGCACGCTCCGGACGGATACGCCACGC
CGACCCACATTTATTCCGATCGAATCCCCGCGTCGCTATTCGAAAATGGC
CCACGGTTCCCTGTCCGGCCACGAGGCCGAGAATCGCCTCCAGAGACTGG
AGTACTTCCTTAACGTTCTCAACCAGATGTGCATTGGATTTATCACCATC
TATATTTCCTATCTCACGCTGCGAACGGGGCTCTCGGGCACGGGTCTGCA
TGCCTGGCTAGTGACCATCGGGTTCTCCTTCTTCATGGCCGAGGGCGTCA
TGATCCACTACGGCGGCAATGTGCTGACAAATGGATACAAGCGTCAGACG
AAGACCACCATTCACTGGGTGCTCCTGACTTTGGGAGGCGGTTGCGGGGC
AGCTGGTGCTCTTATCAAGATGATTCAAAAGGGGTTTTTGCTGCAATCGA
CACATGGGAGGCTGGGGATGACCGCCTTCGTACTGTGCATTCTGGCCATG
TCCTCGGGACTGGCTGCACTTTTCTCCAGCCGCATCAAGAAGCTAATCAC
ACCATTGCTGAACAAGACGTTCCACAACTTCCTGGGATTCGCGTGCTTTG
TGATCGCACTGGTGACCCAGTACTATGGCTACC

BS13196.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13077-PA 810 CG13077-RA 1..667 17..683 3310 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13077-RA 1146 CG13077-RA 274..940 17..683 3320 99.9 Plus
CG13077-RB 849 CG13077-RB 1..643 41..683 3200 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19566136..19566441 17..322 1530 100 Plus
2L 23513712 2L 19566507..19566701 322..516 960 99.5 Plus
2L 23513712 2L 19566985..19567153 515..683 845 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:59:06 has no hits.

BS13196.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:22 Download gff for BS13196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13077-PA 1..667 17..683 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:46:18 Download gff for BS13196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 276..940 19..683 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:00:35 Download gff for BS13196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 276..940 19..683 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:35 Download gff for BS13196.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19566138..19566441 19..322 100 -> Plus
2L 19566508..19566700 323..515 99 -> Plus
2L 19566986..19567153 516..683 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:46:18 Download gff for BS13196.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19566138..19566441 19..322 100 -> Plus
arm_2L 19566508..19566700 323..515 99 -> Plus
arm_2L 19566986..19567153 516..683 100   Plus

BS13196.complete Sequence

842 bp assembled on 2010-02-09

GenBank Submission: KX805536

> BS13196.complete
GAAGTTATCAGTCGACATGTCCGAGAGTAAGCAGCCAGTGCTTAGTAGAA
CTCAGACATCCGCCGACTACGGCAGCACGCTCCGGACGGATACGCCACGC
CGACCCACATTTATTCCGATCGAATCCCCGCGTCGCTATTCGAAAATGGC
CCACGGTTCCCTGTCCGGCCACGAGGCCGAGAATCGCCTCCAGAGACTGG
AGTACTTCCTTAACGTTCTCAACCAGATGTGCATTGGATTTATCACCATC
TATATTTCCTATCTCACGCTGCGAACGGGGCTCTCGGGCACGGGTCTGCA
TGCCTGGCTAGTGACCATCGGGTTCTCCTTCTTCATGGCCGAGGGCGTCA
TGATCCACTACGGCGGCAATGTGCTGACAAATGGATACAAGCGTCAGACG
AAGACCACCATTCACTGGGTGCTCCTGACTTTGGGAGGCGGTTGCGGGGC
AGCTGGTGCTCTTATCAAGATGATTCAAAAGGGGTTTTTGCTGCAATCGA
CACATGGGAGGCTGGGGATGACCGCCTTCGTACTGTGCATTCTGGCCATG
TCCTCGGGACTGGCTGCACTTTTCTCCAGCCGCATCAAGAAGCTAATCAC
ACCATTGCTGAACAAGACGTTCCACAACTTCCTGGGATTCGCGTGCTTTG
TGATCGCACTGGTGACCCAGTACTATGGCTACCAGACGGGCTACTTTAAG
AGCCGAAGTGAGACGGATTTCCAAATCCTGATGAAGTGCCTCACCCTCAT
ATCGTTGGTCCTGTCGAGCTACGGACCGATGAAGGCACTCTATCAGAAAT
GCAAAAATATATCGCAACAGTTTTAGAAGCTTTCTAGACCAT

BS13196.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13077-RA 810 CG13077-PA 1..810 17..826 4035 99.9 Plus
CG13077-RB 681 CG13077-PB 1..681 146..826 3390 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13077-RA 1146 CG13077-RA 274..1084 17..827 4040 99.9 Plus
CG13077-RB 849 CG13077-RB 1..787 41..827 3920 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19566985..19567297 515..827 1565 100 Plus
2L 23513712 2L 19566136..19566441 17..322 1530 100 Plus
2L 23513712 2L 19566507..19566701 322..516 960 99.5 Plus
Blast to na_te.dros performed on 2014-11-28 04:27:17 has no hits.

BS13196.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:22 Download gff for BS13196.complete
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 275..1084 17..826 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:34 Download gff for BS13196.complete
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 274..1083 17..826 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:20 Download gff for BS13196.complete
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 275..1084 17..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:07 Download gff for BS13196.complete
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 274..1083 17..826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:07 Download gff for BS13196.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19566136..19566441 17..322 100 -> Plus
2L 19566508..19566700 323..515 99 -> Plus
2L 19566986..19567296 516..826 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:34 Download gff for BS13196.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19566136..19566441 17..322 100 -> Plus
arm_2L 19566508..19566700 323..515 99 -> Plus
arm_2L 19566986..19567296 516..826 100   Plus

BS13196.pep Sequence

Translation from 16 to 825

> BS13196.pep
MSESKQPVLSRTQTSADYGSTLRTDTPRRPTFIPIESPRRYSKMAHGSLS
GHEAENRLQRLEYFLNVLNQMCIGFITIYISYLTLRTGLSGTGLHAWLVT
IGFSFFMAEGVMIHYGGNVLTNGYKRQTKTTIHWVLLTLGGGCGAAGALI
KMIQKGFLLQSTHGRLGMTAFVLCILAMSSGLAALFSSRIKKLITPLLNK
TFHNFLGFACFVIALVTQYYGYQTGYFKSRSETDFQILMKCLTLISLVLS
SYGPMKALYQKCKNISQQF*

BS13196.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13077-PA 269 CG13077-PA 1..269 1..269 1393 100 Plus
CG13077-PB 226 CG13077-PB 1..226 44..269 1173 100 Plus
CG13078-PA 222 CG13078-PA 12..221 58..266 521 50.2 Plus
CG10165-PD 228 CG10165-PD 13..222 60..268 206 25.7 Plus
CG10165-PC 228 CG10165-PC 13..222 60..268 206 25.7 Plus