Clone Sequence Records
BS13196.5prime Sequence
683 bp (679 high quality bases) assembled on 2006-10-13
> BS13196.5prime
GAAGTTATCAGTCGACATGTCCGAGAGTAAGCAGCCAGTGCTTAGTAGAA
CTCAGACATCCGCCGACTACGGCAGCACGCTCCGGACGGATACGCCACGC
CGACCCACATTTATTCCGATCGAATCCCCGCGTCGCTATTCGAAAATGGC
CCACGGTTCCCTGTCCGGCCACGAGGCCGAGAATCGCCTCCAGAGACTGG
AGTACTTCCTTAACGTTCTCAACCAGATGTGCATTGGATTTATCACCATC
TATATTTCCTATCTCACGCTGCGAACGGGGCTCTCGGGCACGGGTCTGCA
TGCCTGGCTAGTGACCATCGGGTTCTCCTTCTTCATGGCCGAGGGCGTCA
TGATCCACTACGGCGGCAATGTGCTGACAAATGGATACAAGCGTCAGACG
AAGACCACCATTCACTGGGTGCTCCTGACTTTGGGAGGCGGTTGCGGGGC
AGCTGGTGCTCTTATCAAGATGATTCAAAAGGGGTTTTTGCTGCAATCGA
CACATGGGAGGCTGGGGATGACCGCCTTCGTACTGTGCATTCTGGCCATG
TCCTCGGGACTGGCTGCACTTTTCTCCAGCCGCATCAAGAAGCTAATCAC
ACCATTGCTGAACAAGACGTTCCACAACTTCCTGGGATTCGCGTGCTTTG
TGATCGCACTGGTGACCCAGTACTATGGCTACC
BS13196.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:40:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13077-PA | 810 | CG13077-RA | 1..667 | 17..683 | 3310 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13077-RA | 1146 | CG13077-RA | 274..940 | 17..683 | 3320 | 99.9 | Plus |
CG13077-RB | 849 | CG13077-RB | 1..643 | 41..683 | 3200 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19566136..19566441 | 17..322 | 1530 | 100 | Plus |
2L | 23513712 | 2L | 19566507..19566701 | 322..516 | 960 | 99.5 | Plus |
2L | 23513712 | 2L | 19566985..19567153 | 515..683 | 845 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:59:06 has no hits.
BS13196.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:22 Download gff for
BS13196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13077-PA | 1..667 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:46:18 Download gff for
BS13196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13077-RA | 276..940 | 19..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:00:35 Download gff for
BS13196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13077-RA | 276..940 | 19..683 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:35 Download gff for
BS13196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19566138..19566441 | 19..322 | 100 | -> | Plus |
2L | 19566508..19566700 | 323..515 | 99 | -> | Plus |
2L | 19566986..19567153 | 516..683 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:46:18 Download gff for
BS13196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19566138..19566441 | 19..322 | 100 | -> | Plus |
arm_2L | 19566508..19566700 | 323..515 | 99 | -> | Plus |
arm_2L | 19566986..19567153 | 516..683 | 100 | | Plus |
BS13196.complete Sequence
842 bp assembled on 2010-02-09
GenBank Submission: KX805536
> BS13196.complete
GAAGTTATCAGTCGACATGTCCGAGAGTAAGCAGCCAGTGCTTAGTAGAA
CTCAGACATCCGCCGACTACGGCAGCACGCTCCGGACGGATACGCCACGC
CGACCCACATTTATTCCGATCGAATCCCCGCGTCGCTATTCGAAAATGGC
CCACGGTTCCCTGTCCGGCCACGAGGCCGAGAATCGCCTCCAGAGACTGG
AGTACTTCCTTAACGTTCTCAACCAGATGTGCATTGGATTTATCACCATC
TATATTTCCTATCTCACGCTGCGAACGGGGCTCTCGGGCACGGGTCTGCA
TGCCTGGCTAGTGACCATCGGGTTCTCCTTCTTCATGGCCGAGGGCGTCA
TGATCCACTACGGCGGCAATGTGCTGACAAATGGATACAAGCGTCAGACG
AAGACCACCATTCACTGGGTGCTCCTGACTTTGGGAGGCGGTTGCGGGGC
AGCTGGTGCTCTTATCAAGATGATTCAAAAGGGGTTTTTGCTGCAATCGA
CACATGGGAGGCTGGGGATGACCGCCTTCGTACTGTGCATTCTGGCCATG
TCCTCGGGACTGGCTGCACTTTTCTCCAGCCGCATCAAGAAGCTAATCAC
ACCATTGCTGAACAAGACGTTCCACAACTTCCTGGGATTCGCGTGCTTTG
TGATCGCACTGGTGACCCAGTACTATGGCTACCAGACGGGCTACTTTAAG
AGCCGAAGTGAGACGGATTTCCAAATCCTGATGAAGTGCCTCACCCTCAT
ATCGTTGGTCCTGTCGAGCTACGGACCGATGAAGGCACTCTATCAGAAAT
GCAAAAATATATCGCAACAGTTTTAGAAGCTTTCTAGACCAT
BS13196.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:27:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13077-RA | 810 | CG13077-PA | 1..810 | 17..826 | 4035 | 99.9 | Plus |
CG13077-RB | 681 | CG13077-PB | 1..681 | 146..826 | 3390 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:27:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13077-RA | 1146 | CG13077-RA | 274..1084 | 17..827 | 4040 | 99.9 | Plus |
CG13077-RB | 849 | CG13077-RB | 1..787 | 41..827 | 3920 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:27:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19566985..19567297 | 515..827 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 19566136..19566441 | 17..322 | 1530 | 100 | Plus |
2L | 23513712 | 2L | 19566507..19566701 | 322..516 | 960 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:27:17 has no hits.
BS13196.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:22 Download gff for
BS13196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13077-RA | 275..1084 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:34 Download gff for
BS13196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13077-RA | 274..1083 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:20 Download gff for
BS13196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13077-RA | 275..1084 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:07 Download gff for
BS13196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13077-RA | 274..1083 | 17..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:07 Download gff for
BS13196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19566136..19566441 | 17..322 | 100 | -> | Plus |
2L | 19566508..19566700 | 323..515 | 99 | -> | Plus |
2L | 19566986..19567296 | 516..826 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:34 Download gff for
BS13196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19566136..19566441 | 17..322 | 100 | -> | Plus |
arm_2L | 19566508..19566700 | 323..515 | 99 | -> | Plus |
arm_2L | 19566986..19567296 | 516..826 | 100 | | Plus |
BS13196.pep Sequence
Translation from 16 to 825
> BS13196.pep
MSESKQPVLSRTQTSADYGSTLRTDTPRRPTFIPIESPRRYSKMAHGSLS
GHEAENRLQRLEYFLNVLNQMCIGFITIYISYLTLRTGLSGTGLHAWLVT
IGFSFFMAEGVMIHYGGNVLTNGYKRQTKTTIHWVLLTLGGGCGAAGALI
KMIQKGFLLQSTHGRLGMTAFVLCILAMSSGLAALFSSRIKKLITPLLNK
TFHNFLGFACFVIALVTQYYGYQTGYFKSRSETDFQILMKCLTLISLVLS
SYGPMKALYQKCKNISQQF*
BS13196.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13077-PA | 269 | CG13077-PA | 1..269 | 1..269 | 1393 | 100 | Plus |
CG13077-PB | 226 | CG13077-PB | 1..226 | 44..269 | 1173 | 100 | Plus |
CG13078-PA | 222 | CG13078-PA | 12..221 | 58..266 | 521 | 50.2 | Plus |
CG10165-PD | 228 | CG10165-PD | 13..222 | 60..268 | 206 | 25.7 | Plus |
CG10165-PC | 228 | CG10165-PC | 13..222 | 60..268 | 206 | 25.7 | Plus |