Clone BS13201 Report

Search the DGRC for BS13201

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:132
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG32373-RA
Protein status:BS13201.pep: full length peptide match
Sequenced Size:1493

Clone Sequence Records

BS13201.complete Sequence

1493 bp assembled on 2009-12-07

GenBank Submission: KX802854

> BS13201.complete
GAAGTTATCAGTCGACATGGTGCAAAACAGAATGTCGACATCAGTGATTG
TTTTGTACGCGCTTATGTGTATCGCATTTTCCACAGCTTCGTTAAATGAT
ATTCCCGAAATCACCCCCGCAATAGATAACAATTTATCTTTTCAATACGA
CGATACCTGCTGGACTCCTCCGAGGATTAAAAATGCTAAGGCATCCGTCA
AACTTCGCCGAAATGGGGAACATGTCTTTCTTGTGACCTATTATTCCTGC
CGCGTCAACTACAAACTCAAACGTGCCAAAGATAATGCACTCTATTGCTC
AAATGGTATATGGCTTGGTTTGAAACCCAATTGCATAAAGATTGGTAAAG
GAAACACGCATTCAATGAAGCAAAAAAAAATGAGATGCAGGATTGATAAT
GGTGGTTGCGCTCATATATGTAACAGATCAACTCATAAATGCGAATGCTA
TGAGGGTTATACACTGAATTCCACCGATTTAAGAAGCTGTAATGATATCG
ACGAGTGCAAGGAATCGAATGGCGGCTGCTCTCAAGTTTGCAACAACCTT
CCTGGTGAATTCATATGCACCTGTAATAGTGGTTTTGAAATAGACGAAAG
TGATGAAAAAACTTGCTTGGACATTGATGAGTGCGCTGATCCCGAACTAT
CGTGGGACTGTACGGCTGGATGTAAAAACCTAAATGGAACATACAAATGC
CTTCCGTCACTGGTGGGCAGAGTTGAGCCCACCGACGGCGATGGTTTCTC
CCCGGGTGAAATAGTGTGCAAGTCCGGATTCAAGCTGTCCGACGATGGCA
GTGAGTGTCAGGACATTAACGAATGCGATTTGGCGGATATTGATTCAGAT
TCTTGGCGAATGACTTACCGTTACTGTGAGCACAAATGCGAGAATACGGT
AGGTTCCTATATCTGCCATTGCCCCCAAGGATATCATCTACTCGATGATC
AAAATAGTTGTATTTTGGATGGCTCCAAATTACCGCCATCGAAAGACGCG
CCTGTCAGTCAGGAAGCACCAAGAAAGGATATATGCCCTTTGTTTAAGGG
ACCAGCCAACGGAAAGGCTTCTTGCGATAAGTATCTCCAAAATGGCTTCA
ACTACACTCGTTGCAATATTACCTGCAACGCGGGTTATATCATGCAGGGC
TCACAATTTGCGGTTTGTGGACACACCGGACTTTGGTCTAGTCCAGAAGC
CAAGTGCGTGGAATCCCTCGCATTGAGTTGTCCAGTTTTGACACCCCCTC
GCAATGGACGTTTCTATCCTGCAAGCTGCAATAATGAACCATCCAAATCA
CTCGCGATTTGTGAACTGTTATGTGATCGAGGCTATTTGCCCAGAATGGA
CACACAGCTCATTTGTGCGGCACCATGGGGCTGGATCCAAAGAAGATGGC
AGGACAATGTGCCACAATATGTGTTTCAGCAATCAGTGAAACAGGACGAG
GGCTGCGTGAAGATCGCTCCGCCTTAAAAGCTTTCTAGACCAT

BS13201.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG32373-RC 1461 CG32373-PC 1..1461 17..1477 7305 100 Plus
CG32373-RB 1461 CG32373-PB 1..1461 17..1477 7305 100 Plus
CG32373-RA 1461 CG32373-PA 1..1461 17..1477 7305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG32373-RC 1812 CG32373-RC 279..1739 17..1477 7305 100 Plus
CG32373-RB 2066 CG32373-RB 533..1993 17..1477 7305 100 Plus
CG32373-RA 1979 CG32373-RA 446..1906 17..1477 7305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7758030..7758621 620..1211 2960 100 Plus
3L 28110227 3L 7757288..7757587 83..382 1500 100 Plus
3L 28110227 3L 7758719..7758945 1211..1437 1135 100 Plus
3L 28110227 3L 7757827..7757953 494..620 635 100 Plus
3L 28110227 3L 7757652..7757764 382..494 565 100 Plus
3L 28110227 3L 7757110..7757179 17..86 350 100 Plus
3L 28110227 3L 7759009..7759050 1436..1477 210 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:00:07 has no hits.

BS13201.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:46 Download gff for BS13201.complete
Subject Subject Range Query Range Percent Splice Strand
CG32373-RB 498..1956 17..1475 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:38 Download gff for BS13201.complete
Subject Subject Range Query Range Percent Splice Strand
CG32373-RA 446..1904 17..1475 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:52:57 Download gff for BS13201.complete
Subject Subject Range Query Range Percent Splice Strand
CG32373-RB 498..1956 17..1475 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:01 Download gff for BS13201.complete
Subject Subject Range Query Range Percent Splice Strand
CG32373-RA 446..1904 17..1475 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:01 Download gff for BS13201.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7757110..7757179 17..86 100 -> Plus
3L 7757292..7757587 87..382 100 -> Plus
3L 7757653..7757764 383..494 100 -> Plus
3L 7757828..7757953 495..620 100 -> Plus
3L 7758031..7758621 621..1211 100 -> Plus
3L 7758720..7758943 1212..1435 100 -> Plus
3L 7759009..7759048 1436..1475 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:38 Download gff for BS13201.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7750210..7750279 17..86 100 -> Plus
arm_3L 7750392..7750687 87..382 100 -> Plus
arm_3L 7750753..7750864 383..494 100 -> Plus
arm_3L 7750928..7751053 495..620 100 -> Plus
arm_3L 7751131..7751721 621..1211 100 -> Plus
arm_3L 7751820..7752043 1212..1435 100 -> Plus
arm_3L 7752109..7752148 1436..1475 100   Plus

BS13201.3prime Sequence

664 bp (627 high quality bases) assembled on 2006-10-13

> BS13201.3prime
ATGGTCTAGAAAGCTTTTAAGGCGGAGCGATCTTCACGCAGCCCTCGTCC
TGTTTCACTGATTGCTGAAACACATATTGTGGCACATTGTCCTGCCATCT
TCTTTGGATCCAGCCCCATGGTGCCGCACAAATGAGCTGTGTGTCCATTC
TGGGCAAATAGCCTCGATCACATAACAGTTCACAAATCGCGAGTGATTTG
GATGGTTCATTATTGCAGCTTGCAGGATAGAAACGTCCATTGCGAGGGGG
TGTCAAAACTGGACAACTCAATGCGAGGGATTCCACGCACTTGGCTTCTG
GACTAGACCAAAGTCCGGTGTGTCCACAAACCGCAAATTGTGAGCCCTGC
ATGATATAACCCGCGTTGCAGGTAATATTGCAACGAGTGTAATTGAAGCC
ATTTTGGAGATACTTATCGCAAGAAGCCTTTCCGTTGGCTGGTCCCTTAA
ACAAAGGGCATATATCCTTTCTTGGTGCTTCCTGACTGACAGGCGCGTCT
TTCGATGGCGGTAATTTGGAGCCATCCAAAATACAACTATTTTGATCATC
GAGTAGATGATATCCTTGGGGGCAATGGCAGATATAGGAACCTACCGTAT
TCTCGCATTTGTGCTCACAGTAACGGTAAGTCATTCTCCAAGAATCTGAA
TCAATATCCGCCAA

BS13201.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG32373-PA 1461 CG32373-RA 814..1461 664..17 3190 99.6 Minus
CG32373-PB 1461 CG32373-RB 814..1461 664..17 3190 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG32373-RC 1812 CG32373-RC 1092..1739 664..17 3210 99.7 Minus
CG32373-RB 2066 CG32373-RB 1346..1993 664..17 3210 99.7 Minus
CG32373-RA 1979 CG32373-RA 1259..1906 664..17 3210 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7758240..7758621 664..283 1880 99.5 Minus
3L 28110227 3L 7758719..7758945 283..57 1135 100 Minus
3L 28110227 3L 7759009..7759050 58..17 210 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:46:35 has no hits.

BS13201.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:23 Download gff for BS13201.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32373-PB 816..1461 17..662 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:54:18 Download gff for BS13201.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32373-RA 1261..1914 9..662 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:55 Download gff for BS13201.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32373-RA 1261..1914 9..662 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:55 Download gff for BS13201.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7758242..7758621 283..662 99 -> Minus
3L 7758720..7758943 59..282 100 -> Minus
3L 7759009..7759058 9..58 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:54:18 Download gff for BS13201.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7751342..7751721 283..662 99 -> Minus
arm_3L 7751820..7752043 59..282 100 -> Minus
arm_3L 7752109..7752158 9..58 92   Minus

BS13201.5prime Sequence

716 bp (655 high quality bases) assembled on 2006-10-13

> BS13201.5prime
GAAGTTATCAGTCGACATGGTGCAAAACAGAATGTCGACATCAGTGATTG
TTTTGTACGCGCTTATGTGTATCGCATTTTCCACAGCTTCGTTAAATGAT
ATTCCCGAAATCACCCCCGCAATAGATAACAATTTATCTTTTCAATACGA
CGATACCTGCTGGACTCCTCCGAGGATTAAAAATGCTAAGGCATCCGTCA
AACTTCGCCGAAATGGGGAACATGTCTTTCTTGTGACCTATTATTCCTGC
CGCGTCAACTACAAACTCAAACGTGCCAAAGATAATGCACTCTATTGCTC
AAATGGTATATGGCTTGGTTTGAAACCCAATTGCATAAAGATTGGTAAAG
GAAACACGCATTCAATGAAGCAAAAAAAAATGAGATGCAGGATTGATAAT
GGTGGTTGCGCTCATATATGTAACAGATCAACTCATAAATGCGAATGCTA
TGAGGGTTATACACTGAATTCCACCGATTTAAGAAGCTGTAATGATATCG
ACGAGTGCAAGGAATCGAATGGCGGCTGCTCTCAAGTTTGCAACAACCTT
CCTGGTGAATTCATATGCACCTGTAATAGTGGTTTTGAAATAGACGAAAG
TGATGAAAAAACTTTGCTTGGACATTGATGAGTGCGCTGATCCCGAACTA
TCGTGGGACTGTACGGCTGGATGTAAAAACCTAAAATGGAACATACAAAT
GCCTTCCGTCACTGGT

BS13201.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG32373-PA 1461 CG32373-RA 1..698 17..716 3420 99.7 Plus
CG32373-PB 1461 CG32373-RB 1..698 17..716 3420 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG32373-RC 1812 CG32373-RC 279..976 17..716 3450 99.7 Plus
CG32373-RB 2066 CG32373-RB 533..1230 17..716 3450 99.7 Plus
CG32373-RA 1979 CG32373-RA 446..1143 17..716 3450 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7757288..7757587 83..382 1500 100 Plus
3L 28110227 3L 7757827..7757947 494..614 605 100 Plus
3L 28110227 3L 7757652..7757764 382..494 565 100 Plus
3L 28110227 3L 7758030..7758124 621..716 430 99 Plus
3L 28110227 3L 7757110..7757179 17..86 350 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:12:18 has no hits.

BS13201.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:23 Download gff for BS13201.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32373-PB 1..698 17..716 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:34:27 Download gff for BS13201.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32373-RA 437..1143 7..716 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:04 Download gff for BS13201.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32373-RA 437..1143 7..716 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:04 Download gff for BS13201.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7757101..7757179 7..86 95 -> Plus
3L 7757292..7757587 87..382 100 -> Plus
3L 7757653..7757764 383..494 100 -> Plus
3L 7757828..7757953 495..621 99 -> Plus
3L 7758031..7758124 622..716 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:34:27 Download gff for BS13201.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7750201..7750279 7..86 95 -> Plus
arm_3L 7750392..7750687 87..382 100 -> Plus
arm_3L 7750753..7750864 383..494 100 -> Plus
arm_3L 7750928..7751053 495..621 99 -> Plus
arm_3L 7751131..7751224 622..716 98   Plus

BS13201.pep Sequence

Translation from 16 to 1476

> BS13201.pep
MVQNRMSTSVIVLYALMCIAFSTASLNDIPEITPAIDNNLSFQYDDTCWT
PPRIKNAKASVKLRRNGEHVFLVTYYSCRVNYKLKRAKDNALYCSNGIWL
GLKPNCIKIGKGNTHSMKQKKMRCRIDNGGCAHICNRSTHKCECYEGYTL
NSTDLRSCNDIDECKESNGGCSQVCNNLPGEFICTCNSGFEIDESDEKTC
LDIDECADPELSWDCTAGCKNLNGTYKCLPSLVGRVEPTDGDGFSPGEIV
CKSGFKLSDDGSECQDINECDLADIDSDSWRMTYRYCEHKCENTVGSYIC
HCPQGYHLLDDQNSCILDGSKLPPSKDAPVSQEAPRKDICPLFKGPANGK
ASCDKYLQNGFNYTRCNITCNAGYIMQGSQFAVCGHTGLWSSPEAKCVES
LALSCPVLTPPRNGRFYPASCNNEPSKSLAICELLCDRGYLPRMDTQLIC
AAPWGWIQRRWQDNVPQYVFQQSVKQDEGCVKIAPP*

BS13201.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG32373-PC 486 CG32373-PC 1..486 1..486 2727 100 Plus
CG32373-PB 486 CG32373-PB 1..486 1..486 2727 100 Plus
CG32373-PA 486 CG32373-PA 1..486 1..486 2727 100 Plus
frac-PG 1427 CG7526-PG 248..461 124..318 560 48.4 Plus
frac-PF 1427 CG7526-PF 248..461 124..318 560 48.4 Plus
frac-PG 1427 CG7526-PG 636..1043 124..456 391 29.4 Plus
frac-PG 1427 CG7526-PG 596..789 124..315 368 40.9 Plus
frac-PG 1427 CG7526-PG 524..786 129..380 234 26.2 Plus
frac-PG 1427 CG7526-PG 426..672 127..316 213 25.9 Plus