Clone Sequence Records
BS13201.complete Sequence
1493 bp assembled on 2009-12-07
GenBank Submission: KX802854
> BS13201.complete
GAAGTTATCAGTCGACATGGTGCAAAACAGAATGTCGACATCAGTGATTG
TTTTGTACGCGCTTATGTGTATCGCATTTTCCACAGCTTCGTTAAATGAT
ATTCCCGAAATCACCCCCGCAATAGATAACAATTTATCTTTTCAATACGA
CGATACCTGCTGGACTCCTCCGAGGATTAAAAATGCTAAGGCATCCGTCA
AACTTCGCCGAAATGGGGAACATGTCTTTCTTGTGACCTATTATTCCTGC
CGCGTCAACTACAAACTCAAACGTGCCAAAGATAATGCACTCTATTGCTC
AAATGGTATATGGCTTGGTTTGAAACCCAATTGCATAAAGATTGGTAAAG
GAAACACGCATTCAATGAAGCAAAAAAAAATGAGATGCAGGATTGATAAT
GGTGGTTGCGCTCATATATGTAACAGATCAACTCATAAATGCGAATGCTA
TGAGGGTTATACACTGAATTCCACCGATTTAAGAAGCTGTAATGATATCG
ACGAGTGCAAGGAATCGAATGGCGGCTGCTCTCAAGTTTGCAACAACCTT
CCTGGTGAATTCATATGCACCTGTAATAGTGGTTTTGAAATAGACGAAAG
TGATGAAAAAACTTGCTTGGACATTGATGAGTGCGCTGATCCCGAACTAT
CGTGGGACTGTACGGCTGGATGTAAAAACCTAAATGGAACATACAAATGC
CTTCCGTCACTGGTGGGCAGAGTTGAGCCCACCGACGGCGATGGTTTCTC
CCCGGGTGAAATAGTGTGCAAGTCCGGATTCAAGCTGTCCGACGATGGCA
GTGAGTGTCAGGACATTAACGAATGCGATTTGGCGGATATTGATTCAGAT
TCTTGGCGAATGACTTACCGTTACTGTGAGCACAAATGCGAGAATACGGT
AGGTTCCTATATCTGCCATTGCCCCCAAGGATATCATCTACTCGATGATC
AAAATAGTTGTATTTTGGATGGCTCCAAATTACCGCCATCGAAAGACGCG
CCTGTCAGTCAGGAAGCACCAAGAAAGGATATATGCCCTTTGTTTAAGGG
ACCAGCCAACGGAAAGGCTTCTTGCGATAAGTATCTCCAAAATGGCTTCA
ACTACACTCGTTGCAATATTACCTGCAACGCGGGTTATATCATGCAGGGC
TCACAATTTGCGGTTTGTGGACACACCGGACTTTGGTCTAGTCCAGAAGC
CAAGTGCGTGGAATCCCTCGCATTGAGTTGTCCAGTTTTGACACCCCCTC
GCAATGGACGTTTCTATCCTGCAAGCTGCAATAATGAACCATCCAAATCA
CTCGCGATTTGTGAACTGTTATGTGATCGAGGCTATTTGCCCAGAATGGA
CACACAGCTCATTTGTGCGGCACCATGGGGCTGGATCCAAAGAAGATGGC
AGGACAATGTGCCACAATATGTGTTTCAGCAATCAGTGAAACAGGACGAG
GGCTGCGTGAAGATCGCTCCGCCTTAAAAGCTTTCTAGACCAT
BS13201.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32373-RC | 1461 | CG32373-PC | 1..1461 | 17..1477 | 7305 | 100 | Plus |
CG32373-RB | 1461 | CG32373-PB | 1..1461 | 17..1477 | 7305 | 100 | Plus |
CG32373-RA | 1461 | CG32373-PA | 1..1461 | 17..1477 | 7305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32373-RC | 1812 | CG32373-RC | 279..1739 | 17..1477 | 7305 | 100 | Plus |
CG32373-RB | 2066 | CG32373-RB | 533..1993 | 17..1477 | 7305 | 100 | Plus |
CG32373-RA | 1979 | CG32373-RA | 446..1906 | 17..1477 | 7305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7758030..7758621 | 620..1211 | 2960 | 100 | Plus |
3L | 28110227 | 3L | 7757288..7757587 | 83..382 | 1500 | 100 | Plus |
3L | 28110227 | 3L | 7758719..7758945 | 1211..1437 | 1135 | 100 | Plus |
3L | 28110227 | 3L | 7757827..7757953 | 494..620 | 635 | 100 | Plus |
3L | 28110227 | 3L | 7757652..7757764 | 382..494 | 565 | 100 | Plus |
3L | 28110227 | 3L | 7757110..7757179 | 17..86 | 350 | 100 | Plus |
3L | 28110227 | 3L | 7759009..7759050 | 1436..1477 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:00:07 has no hits.
BS13201.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:46 Download gff for
BS13201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32373-RB | 498..1956 | 17..1475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:38 Download gff for
BS13201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32373-RA | 446..1904 | 17..1475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:52:57 Download gff for
BS13201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32373-RB | 498..1956 | 17..1475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:01 Download gff for
BS13201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32373-RA | 446..1904 | 17..1475 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:01 Download gff for
BS13201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7757110..7757179 | 17..86 | 100 | -> | Plus |
3L | 7757292..7757587 | 87..382 | 100 | -> | Plus |
3L | 7757653..7757764 | 383..494 | 100 | -> | Plus |
3L | 7757828..7757953 | 495..620 | 100 | -> | Plus |
3L | 7758031..7758621 | 621..1211 | 100 | -> | Plus |
3L | 7758720..7758943 | 1212..1435 | 100 | -> | Plus |
3L | 7759009..7759048 | 1436..1475 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:38 Download gff for
BS13201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7750210..7750279 | 17..86 | 100 | -> | Plus |
arm_3L | 7750392..7750687 | 87..382 | 100 | -> | Plus |
arm_3L | 7750753..7750864 | 383..494 | 100 | -> | Plus |
arm_3L | 7750928..7751053 | 495..620 | 100 | -> | Plus |
arm_3L | 7751131..7751721 | 621..1211 | 100 | -> | Plus |
arm_3L | 7751820..7752043 | 1212..1435 | 100 | -> | Plus |
arm_3L | 7752109..7752148 | 1436..1475 | 100 | | Plus |
BS13201.3prime Sequence
664 bp (627 high quality bases) assembled on 2006-10-13
> BS13201.3prime
ATGGTCTAGAAAGCTTTTAAGGCGGAGCGATCTTCACGCAGCCCTCGTCC
TGTTTCACTGATTGCTGAAACACATATTGTGGCACATTGTCCTGCCATCT
TCTTTGGATCCAGCCCCATGGTGCCGCACAAATGAGCTGTGTGTCCATTC
TGGGCAAATAGCCTCGATCACATAACAGTTCACAAATCGCGAGTGATTTG
GATGGTTCATTATTGCAGCTTGCAGGATAGAAACGTCCATTGCGAGGGGG
TGTCAAAACTGGACAACTCAATGCGAGGGATTCCACGCACTTGGCTTCTG
GACTAGACCAAAGTCCGGTGTGTCCACAAACCGCAAATTGTGAGCCCTGC
ATGATATAACCCGCGTTGCAGGTAATATTGCAACGAGTGTAATTGAAGCC
ATTTTGGAGATACTTATCGCAAGAAGCCTTTCCGTTGGCTGGTCCCTTAA
ACAAAGGGCATATATCCTTTCTTGGTGCTTCCTGACTGACAGGCGCGTCT
TTCGATGGCGGTAATTTGGAGCCATCCAAAATACAACTATTTTGATCATC
GAGTAGATGATATCCTTGGGGGCAATGGCAGATATAGGAACCTACCGTAT
TCTCGCATTTGTGCTCACAGTAACGGTAAGTCATTCTCCAAGAATCTGAA
TCAATATCCGCCAA
BS13201.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:40:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32373-PA | 1461 | CG32373-RA | 814..1461 | 664..17 | 3190 | 99.6 | Minus |
CG32373-PB | 1461 | CG32373-RB | 814..1461 | 664..17 | 3190 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:46:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32373-RC | 1812 | CG32373-RC | 1092..1739 | 664..17 | 3210 | 99.7 | Minus |
CG32373-RB | 2066 | CG32373-RB | 1346..1993 | 664..17 | 3210 | 99.7 | Minus |
CG32373-RA | 1979 | CG32373-RA | 1259..1906 | 664..17 | 3210 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:46:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7758240..7758621 | 664..283 | 1880 | 99.5 | Minus |
3L | 28110227 | 3L | 7758719..7758945 | 283..57 | 1135 | 100 | Minus |
3L | 28110227 | 3L | 7759009..7759050 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:46:35 has no hits.
BS13201.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:23 Download gff for
BS13201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32373-PB | 816..1461 | 17..662 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:54:18 Download gff for
BS13201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32373-RA | 1261..1914 | 9..662 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:55 Download gff for
BS13201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32373-RA | 1261..1914 | 9..662 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:55 Download gff for
BS13201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7758242..7758621 | 283..662 | 99 | -> | Minus |
3L | 7758720..7758943 | 59..282 | 100 | -> | Minus |
3L | 7759009..7759058 | 9..58 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:54:18 Download gff for
BS13201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7751342..7751721 | 283..662 | 99 | -> | Minus |
arm_3L | 7751820..7752043 | 59..282 | 100 | -> | Minus |
arm_3L | 7752109..7752158 | 9..58 | 92 | | Minus |
BS13201.5prime Sequence
716 bp (655 high quality bases) assembled on 2006-10-13
> BS13201.5prime
GAAGTTATCAGTCGACATGGTGCAAAACAGAATGTCGACATCAGTGATTG
TTTTGTACGCGCTTATGTGTATCGCATTTTCCACAGCTTCGTTAAATGAT
ATTCCCGAAATCACCCCCGCAATAGATAACAATTTATCTTTTCAATACGA
CGATACCTGCTGGACTCCTCCGAGGATTAAAAATGCTAAGGCATCCGTCA
AACTTCGCCGAAATGGGGAACATGTCTTTCTTGTGACCTATTATTCCTGC
CGCGTCAACTACAAACTCAAACGTGCCAAAGATAATGCACTCTATTGCTC
AAATGGTATATGGCTTGGTTTGAAACCCAATTGCATAAAGATTGGTAAAG
GAAACACGCATTCAATGAAGCAAAAAAAAATGAGATGCAGGATTGATAAT
GGTGGTTGCGCTCATATATGTAACAGATCAACTCATAAATGCGAATGCTA
TGAGGGTTATACACTGAATTCCACCGATTTAAGAAGCTGTAATGATATCG
ACGAGTGCAAGGAATCGAATGGCGGCTGCTCTCAAGTTTGCAACAACCTT
CCTGGTGAATTCATATGCACCTGTAATAGTGGTTTTGAAATAGACGAAAG
TGATGAAAAAACTTTGCTTGGACATTGATGAGTGCGCTGATCCCGAACTA
TCGTGGGACTGTACGGCTGGATGTAAAAACCTAAAATGGAACATACAAAT
GCCTTCCGTCACTGGT
BS13201.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:40:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32373-PA | 1461 | CG32373-RA | 1..698 | 17..716 | 3420 | 99.7 | Plus |
CG32373-PB | 1461 | CG32373-RB | 1..698 | 17..716 | 3420 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32373-RC | 1812 | CG32373-RC | 279..976 | 17..716 | 3450 | 99.7 | Plus |
CG32373-RB | 2066 | CG32373-RB | 533..1230 | 17..716 | 3450 | 99.7 | Plus |
CG32373-RA | 1979 | CG32373-RA | 446..1143 | 17..716 | 3450 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7757288..7757587 | 83..382 | 1500 | 100 | Plus |
3L | 28110227 | 3L | 7757827..7757947 | 494..614 | 605 | 100 | Plus |
3L | 28110227 | 3L | 7757652..7757764 | 382..494 | 565 | 100 | Plus |
3L | 28110227 | 3L | 7758030..7758124 | 621..716 | 430 | 99 | Plus |
3L | 28110227 | 3L | 7757110..7757179 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:12:18 has no hits.
BS13201.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:23 Download gff for
BS13201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32373-PB | 1..698 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:34:27 Download gff for
BS13201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32373-RA | 437..1143 | 7..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:04 Download gff for
BS13201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32373-RA | 437..1143 | 7..716 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:04 Download gff for
BS13201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7757101..7757179 | 7..86 | 95 | -> | Plus |
3L | 7757292..7757587 | 87..382 | 100 | -> | Plus |
3L | 7757653..7757764 | 383..494 | 100 | -> | Plus |
3L | 7757828..7757953 | 495..621 | 99 | -> | Plus |
3L | 7758031..7758124 | 622..716 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:34:27 Download gff for
BS13201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7750201..7750279 | 7..86 | 95 | -> | Plus |
arm_3L | 7750392..7750687 | 87..382 | 100 | -> | Plus |
arm_3L | 7750753..7750864 | 383..494 | 100 | -> | Plus |
arm_3L | 7750928..7751053 | 495..621 | 99 | -> | Plus |
arm_3L | 7751131..7751224 | 622..716 | 98 | | Plus |
BS13201.pep Sequence
Translation from 16 to 1476
> BS13201.pep
MVQNRMSTSVIVLYALMCIAFSTASLNDIPEITPAIDNNLSFQYDDTCWT
PPRIKNAKASVKLRRNGEHVFLVTYYSCRVNYKLKRAKDNALYCSNGIWL
GLKPNCIKIGKGNTHSMKQKKMRCRIDNGGCAHICNRSTHKCECYEGYTL
NSTDLRSCNDIDECKESNGGCSQVCNNLPGEFICTCNSGFEIDESDEKTC
LDIDECADPELSWDCTAGCKNLNGTYKCLPSLVGRVEPTDGDGFSPGEIV
CKSGFKLSDDGSECQDINECDLADIDSDSWRMTYRYCEHKCENTVGSYIC
HCPQGYHLLDDQNSCILDGSKLPPSKDAPVSQEAPRKDICPLFKGPANGK
ASCDKYLQNGFNYTRCNITCNAGYIMQGSQFAVCGHTGLWSSPEAKCVES
LALSCPVLTPPRNGRFYPASCNNEPSKSLAICELLCDRGYLPRMDTQLIC
AAPWGWIQRRWQDNVPQYVFQQSVKQDEGCVKIAPP*
BS13201.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:14:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32373-PC | 486 | CG32373-PC | 1..486 | 1..486 | 2727 | 100 | Plus |
CG32373-PB | 486 | CG32373-PB | 1..486 | 1..486 | 2727 | 100 | Plus |
CG32373-PA | 486 | CG32373-PA | 1..486 | 1..486 | 2727 | 100 | Plus |
frac-PG | 1427 | CG7526-PG | 248..461 | 124..318 | 560 | 48.4 | Plus |
frac-PF | 1427 | CG7526-PF | 248..461 | 124..318 | 560 | 48.4 | Plus |
frac-PG | 1427 | CG7526-PG | 636..1043 | 124..456 | 391 | 29.4 | Plus |
frac-PG | 1427 | CG7526-PG | 596..789 | 124..315 | 368 | 40.9 | Plus |
frac-PG | 1427 | CG7526-PG | 524..786 | 129..380 | 234 | 26.2 | Plus |
frac-PG | 1427 | CG7526-PG | 426..672 | 127..316 | 213 | 25.9 | Plus |