Clone Sequence Records
BS13206.complete Sequence
864 bp assembled on 2010-02-09
GenBank Submission: KX802595
> BS13206.complete
GAAGTTATCAGTCGACATGGCTGCTGTTGTTCCCACTGAAACCTCCGCCG
CCCCCGCCTCCTGGTGTGGGCGCGGTGCCAAGCCCCGAACCTTTGAAAAG
GAACCGCCAGTCATCTGCTATGACAAGCCCGCAGCTTCGATCGTTTCGAA
GGAGGAGTATGATAATAAACGTTATCGTGCCCTGACTGGCGATCTTGTGG
AGACACTGATTGTGCCCAAACGGGAGGCACGCACCTGGACAATGCAAGAG
GGTGATTTGTGCCGCGTCACTGTCCACGAAGGTTCTCAGGTGGGCGACAT
GAACTTTTGGAATCTGGAGAACACCGCCGAGCGCTTCTACTCGGGCAAGA
CGCGCCAGCTGCACTCGTCGCATCTGCGCGTTTACGATCGTCTGTGGAGC
TGCCTGCCCCACCTGCGTCCCATGGCCACCTTTGTGTTTGATTCCCTTGC
CGCCTATGGCATCGATGAGGATGGCGGTGCTCTGCACGACGTAATTGGAA
CACGGTGCGACGACTACACCTACAAGCTAATCACGGGCAAGGATCGGGTG
GGCAGTTGCCACAGTTCCCTAGTCAAGGCGGTGGTGGAGGAGCGCGGGCT
GACCGAGCAGGATGTACACGACGTGTGGAACATCTTTATGTGCACCGGAT
TTACACGGGACACGCATCAGTATTTCTGCAAGGCAAGTCCAGCGCGCAAG
GGGGATTTCATTGAGTTTGTGGCCGACATGAATCTTCTGGTGGCTCTGAG
CGCCTGTCCACAGGGCGATGTCTCCATCGCAGTGGGCGCCGATGTGCCGG
ACGACAAGTGCCACCCCCTCAAGGTCGAAGTGTTCCGTCGCAAGTAAAAG
CCTTTCTAGACCAT
BS13206.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:02:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10208-RA | 831 | CG10208-PA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:02:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10208-RA | 1064 | CG10208-RA | 95..927 | 16..848 | 4165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23773135..23773819 | 848..164 | 3425 | 100 | Minus |
| 3R | 32079331 | 3R | 23773886..23774033 | 163..16 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:02:05 has no hits.
BS13206.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:35 Download gff for
BS13206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10208-RA | 92..920 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:22 Download gff for
BS13206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10208-RA | 96..924 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:44 Download gff for
BS13206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10208-RA | 92..920 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:11 Download gff for
BS13206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10208-RA | 96..924 | 17..845 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:11 Download gff for
BS13206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23773138..23773819 | 164..845 | 100 | <- | Minus |
| 3R | 23773886..23774032 | 17..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:22 Download gff for
BS13206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19598860..19599541 | 164..845 | 100 | <- | Minus |
| arm_3R | 19599608..19599754 | 17..163 | 100 | | Minus |
BS13206.3prime Sequence
693 bp (649 high quality bases) assembled on 2006-10-13
> BS13206.3prime
ATGGTCTAGAAAGGCTTTTACTTGCGACGGAACACTTCGACCTTGAGGGG
GTGGCACTTGTCGTCCGGCACATCGGCGCCCACTGCGATGGAGACATCGC
CCTGTGGACAGGCGCTCAGAGCCACCAGAAGATTCATGTCGGCCACAAAC
TCAATGAAATCCCCCTTGCGCGCTGGACTTGCCTTGCAGAAATACTGATG
CGTGTCCCGTGTAAATCCGGTGCACATAAAGATGTTCCACACGTCGTGTA
CATCCTGCTCGGTCAGCCCGCGCTCCTCCACCACCGCCTTGACTAGGGAA
CTGTGGCAACTGCCCACCCGATCCTTGCCCGTGATTAGCTTGTAGGTGTA
GTCGTCGCACCGTGTTCCAATTACGTCGTGCAGAGCACCGCCATCCTCAT
CGATGCCATAGGCGGCAAGGGAATCAAACACAAAGGTGGCCATGGGACGC
AGGTGGGGCAGGCAGCTCCACAGACGATCGTAAACGCGCAGATGCGACGA
GTGCAGCTGGCGCGTCTTGCCCGAGTAGAAGCGCTCGGCGGTGTTCTCCA
GATTCCAAAAGTTCATGTCGCCCACCTGAGAACCTTCGTGGACAGTGACG
CGGCACAAATCACCCTCTTGCATTGTCCAGGTGCGTGCCTCCCGTTTGGG
CACAATCAGTGTCTCCACAAGATCGCCAGTCAGGGAACGATAA
BS13206.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:41:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10208-PA | 831 | CG10208-RA | 156..831 | 693..18 | 3355 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:17:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10208-RA | 1064 | CG10208-RA | 251..927 | 693..17 | 3370 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23773135..23773811 | 17..693 | 3370 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:17:00 has no hits.
BS13206.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:25 Download gff for
BS13206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10208-PA | 158..831 | 18..691 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:07:15 Download gff for
BS13206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10208-RA | 251..937 | 10..693 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:10:19 Download gff for
BS13206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10208-RA | 251..937 | 10..693 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:10:19 Download gff for
BS13206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23773124..23773811 | 10..693 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:07:15 Download gff for
BS13206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19598846..19599533 | 10..693 | 99 | | Plus |
BS13206.5prime Sequence
796 bp (648 high quality bases) assembled on 2006-10-13
> BS13206.5prime
GAAGTTATCAGTCGACATGGCTGCTGTTGTTCCCACTGAAACCTCCGCCG
CCCCCGCCTCCTGGTGTGGGCGCGGTGCCAAGCCCCGAACCTTTGAAAAG
GAACCGCCAGTCATCTGCTATGACAAGCCCGCAGCTTCGATCGTTTCGAA
GGAGGAGTATGATAATAAACGTTATCGTGCCCTGACTGGCGATCTTGTGG
AGACACTGATTGTGCCCAAACGGGAGGCACGCACCTGGACAATGCAAGAG
GGTGATTTGTGCCGCGTCACTGTCCACGAAGGTTCTCAGGTGGGCGACAT
GAACTTTTGGAATCTGGAGAACACCGCCGAGCGCTTCTACTCGGGCAAGA
CGCGCCAGCTGCACTCGTCGCATCTGCGCGTTTACGATCGTCTGTGGAGC
TGCCTGCCCCACCTGCGTCCCATGGCCACCTTTGTGTTTGATTCCCTTGC
CGCCTATGGCATCGATGAGGATGGCGGTGCTCTGCACGACGTAATTGGAA
CACGGTGCGACGACTACACCTACAAGCTAATCACGGGCAAGGATCGGGTG
GGCAGTTGCCACAGTTCCCTAGTCAAGGCGGTGGTGGAGGAGCGCGGGCT
GACCGAGCAGGATGTACACGACGTGTGGAACATCTTTATGTGCACCGGAT
TTACACGGGACACGCATCAGTATTTCTGCAAGGCAAGTCCAGCGCGCAAG
GGGGATTTCATTGAGTTTGTGGCCGACATGAATCTTCTGGTGGCTCTGAG
CGCCTGTCCACAGGGCGATGTCTTCATCGCAATGGGCGCCGATGTG
BS13206.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10208-PA | 831 | CG10208-RA | 1..780 | 17..796 | 3850 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10208-RA | 1064 | CG10208-RA | 95..875 | 16..796 | 3875 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:51:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23773187..23773819 | 796..164 | 3135 | 99.7 | Minus |
| 3R | 32079331 | 3R | 23773886..23774033 | 163..16 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:51:14 has no hits.
BS13206.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:26 Download gff for
BS13206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10208-PA | 1..780 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:37:08 Download gff for
BS13206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10208-RA | 84..875 | 4..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:08:52 Download gff for
BS13206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10208-RA | 84..875 | 4..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:08:52 Download gff for
BS13206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23773187..23773819 | 164..796 | 99 | <- | Minus |
| 3R | 23773886..23774044 | 4..163 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:37:08 Download gff for
BS13206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19598909..19599541 | 164..796 | 99 | <- | Minus |
| arm_3R | 19599608..19599766 | 4..163 | 97 | | Minus |
BS13206.pep Sequence
Translation from 16 to 846
> BS13206.pep
MAAVVPTETSAAPASWCGRGAKPRTFEKEPPVICYDKPAASIVSKEEYDN
KRYRALTGDLVETLIVPKREARTWTMQEGDLCRVTVHEGSQVGDMNFWNL
ENTAERFYSGKTRQLHSSHLRVYDRLWSCLPHLRPMATFVFDSLAAYGID
EDGGALHDVIGTRCDDYTYKLITGKDRVGSCHSSLVKAVVEERGLTEQDV
HDVWNIFMCTGFTRDTHQYFCKASPARKGDFIEFVADMNLLVALSACPQG
DVSIAVGADVPDDKCHPLKVEVFRRK*
BS13206.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:15:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10208-PA | 276 | CG10208-PA | 1..276 | 1..276 | 1486 | 100 | Plus |
