Clone Sequence Records
BS13207.complete Sequence
1958 bp assembled on 2009-12-07
GenBank Submission: KX805712
> BS13207.complete
GAAGTTATCAGTCGACATGACGGCCAACACAGGGACGTCGGGTGAAAATC
TGATGGGAAATGGTGGAAAGACGCATGAACCCTCCACGCCCACTTCGGAT
ACGGAAGTGGCCAGCGGCACGCCAACGGAACTGAGCGAAATCTTCTTCGT
GGACAATAGCCGGCGCAAGCAGAGCATCAAAATCCAGGTGAAACTATGCC
CGGAAGGCGTTTACCTGCGACGCGAAACCGAGGAAGATGATCACATCAAT
GAGCAGCTGATCAGGATCGATGATATCATAGGATCACGCTACGGACGGCG
TTTGAAGAAACGAGCCCGAGGCGGTCTAAACTCCTGCCGCAATCCAAATG
TTCCGGGCCAGGAGGCGGATTCGGAACCGGATAGCGATAATAGCGCCTAT
TTGTACATCTATGCATATTTGAAGAAGGAGAAACCGTTGCGACGTGTCCA
AACGCTCCGGATTCTACGCTTTCGTTCGAGCAATGACTACGGAGTGAATC
TACAGACCGCCGAGATGTGGCATCATACGATTCGAAAGCACAAGCGTGGC
AATGGCAGCAGTTCGCCCGCCGATTGTGGCAAACAGTTGCTCATCCTACT
GAATCCGAAATCCGGTTCGGGCAAAGGGCGTGAGCTCTTCCAGAAACAGG
TGGCACCTTTGCTGACGGAAGCAGAGGTGCAATACGATCTCCAGATCACC
ACACATCCGCAGTATGCCAAGGAGTTCGTGCGGACCAGAAGGGATCTGCT
GACACGCTATTCGGGCATTGTGGTTGCCTCCGGCGATGGTCTATTCTACG
AAGTGCTCAATGGGCTAATGGAACGCATGGATTGGCGCCGAGCCTGCAGG
GAGCTACCGCTTGGCATTATACCATGTGGTTCCGGGAATGGTCTGGCCAA
AAGTGTGGCCCATCATTGCAATGAACCGTACGAACCGAAGCCCATTCTCC
ACGCCACCTTGACCTGCATGGCGGGCAAAAGTACACCCATGGATGTGGTC
AGAGTGGAGCTGGCGACGCGGGACAAGCACTTTGTGATGTACTCCTTCCT
GTCGGTGGGCTGGGGTCTGATAGCCGACATCGATATAGAGAGCGAGCGAT
TGAGATCGATTGGAGCGCAAAGGTTTACGCTGTGGGCCATCAAGCGATTG
ATCGGGCTGCGCAGCTACAAAGGCCGAGTGTCCTATCTACTGGGCAAGGG
CAAGAAGGAACCACCAGTGGAAGCGGCTCGAGAGTTGCCTGCAGAATCAA
CGGCTGCAGGAATCCGCTCATCTCTGCCTCTGAATGCCGGGGAATTCCAT
GATCTACCCGAGGAGGAGGAGGGGGAGGCGGTCTTGGATGGAGAACAGTT
CGCCGATGCCATATCTTTGGATCGTTCGGTTTACCGCCAGCATGCCGACA
GTTGGCACTCGGCCATGTCCAGGCGAACGGCATATTACTCCCTGGGCGGA
CCCAGTATGCGATCCAATCGCAGCCGGATGAGCATTAGCCAGCGGATCGA
GGCAGCAAATGCGGAATTCGCTGAGAGGGTGCCAACGGGCACCATTCCAC
CATTACAGATGCCACTGCTCAGCAGCGATGGTTGGATCTGCGAGGATGGT
GACTTTGTGATGGTCCATGCCGCCTATACCACCCATCTCTCCTCCGATGT
CTTCTTTGCGCCCGAATCCCGTCTGGACGATGGCCTCATCTACCTGGTGA
TCATCCGGAGAGGCGTTAGTCGCCATCAGCTGCTCAATTTCATGCTGAAC
CTAAACGCAGGCACCCATCTGCCCATCGGCGAGGATCCGTTCATCAAGGT
GGTGCCTTGTCGGGCATTCCGCATCGAGCCGAGCAGCTCCGATGGCATCC
TGGTGGTGGACGGCGAGCGGGTGGAATATGGACCCATTCAGGCGGAGGTT
ATGCCCGGCCTGATCAATGTGATGACCACCAGTGGGCAGTAGAAGCTTTC
TAGACCAT
BS13207.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk1-RA | 1926 | CG1747-PA | 1..1926 | 17..1942 | 9630 | 100 | Plus |
| Sk1-RB | 1926 | CG1747-PB | 1..1926 | 17..1942 | 9630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk1-RA | 2680 | CG1747-RA | 303..2228 | 17..1942 | 9630 | 100 | Plus |
| Sk1-RB | 2616 | CG1747-RB | 237..2162 | 17..1942 | 9630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11443633..11445558 | 17..1942 | 9630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:28:51 has no hits.
BS13207.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:31 Download gff for
BS13207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RA | 95..2020 | 17..1942 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:14 Download gff for
BS13207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RB | 237..2162 | 17..1942 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:44 Download gff for
BS13207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RA | 95..2020 | 17..1942 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:23 Download gff for
BS13207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RB | 237..2162 | 17..1942 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:23 Download gff for
BS13207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11443633..11445558 | 17..1942 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:14 Download gff for
BS13207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11337666..11339591 | 17..1942 | 100 | | Plus |
BS13207.3prime Sequence
683 bp (620 high quality bases) assembled on 2006-10-13
> BS13207.3prime
ATGGTCTAGAAAGCTTCTACTGCCCACTGGTGGTCATCACATTGATCAGG
CCGGGCATAACCTCCGCCTGAATGGGTCCATATTCCACCCGCTCGCCGTC
CACCACCAGGATGCCATCGGAGCTGCTCGGCTCGATGCGGAATGCCCGAC
AAGGCACCACCTTGATGAACGGATCCTCGCCGATGGGCAGATGGGTGCCT
GCGTTTAGGTTCAGCATGAAATTGAGCAGCTGATGGCGACTAACGCCTCT
CCGGATGATCACCAGGTAGATGAGGCCATCGTCCAGACGGGATTCGGGCG
CAAAGAAGACATCGGAGGAGAGATGGGTGGTATAGGCGGCATGGACCATC
ACAAAGTCACCATCCTCGCAGATCCAACCATCGCTGCTGAGCAGTGGCAT
CTGTAATGGTGGAATGGTGCCCGTTGGCACCCTCTCAGCGAATTCCGCAT
TTGCTGCCTCGATCCGCTGGCTAATGCTCATCCGGCTGCGATTGGATCGC
ATACTGGGTCCGCCCAGGGAGTAATATGCCGTTCGCCTGGACATGGCCGA
GTGCCAACTGTCGGCATGCTGGCGGTAAACCGAACGATCCAAAGATATGG
CATCGGCGAACTGTTCTCCATCCAAGACCGCCTCCCCCTCCTCCTCCTCG
GGTAGATCATGGAATTCCCCGGCATTCAGAGGC
BS13207.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:41:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1747-PB | 1926 | Sk1-RB | 1260..1926 | 683..17 | 3335 | 100 | Minus |
| CG1747-PA | 1926 | Sk1-RA | 1260..1926 | 683..17 | 3335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk1-RA | 2680 | CG1747-RA | 1562..2228 | 683..17 | 3335 | 100 | Minus |
| Sk1-RB | 2616 | CG1747-RB | 1496..2162 | 683..17 | 3335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11444892..11445558 | 683..17 | 3335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:21:15 has no hits.
BS13207.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:26 Download gff for
BS13207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1747-PA | 1260..1926 | 17..683 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:51:09 Download gff for
BS13207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RB | 1496..2162 | 17..683 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:50:51 Download gff for
BS13207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RB | 1496..2162 | 17..683 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:50:51 Download gff for
BS13207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11444892..11445558 | 17..683 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:51:09 Download gff for
BS13207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11338925..11339591 | 17..683 | 100 | | Minus |
BS13207.5prime Sequence
736 bp (640 high quality bases) assembled on 2006-10-13
> BS13207.5prime
GAAGTTATCAGTCGACATGACGGCCAACACAGGGACGTCGGGTGAAAATC
TGATGGGAAATGGTGGAAAGACGCATGAACCCTCCACGCCCACTTCGGAT
ACGGAAGTGGCCAGCGGCACGCCAACGGAACTGAGCGAAATCTTCTTCGT
GGACAATAGCCGGCGCAAGCAGAGCATCAAAATCCAGGTGAAACTATGCC
CGGAAGGCGTTTACCTGCGACGCGAAACCGAGGAAGATGATCACATCAAT
GAGCAGCTGATCAGGATCGATGATATCATAGGATCACGCTACGGACGGCG
TTTGAAGAAACGAGCCCGAGGCGGTCTAAACTCCTGCCGCAATCCAAATG
TTCCGGGCCAGGAGGCGGATTCGGAACCGGATAGCGATAATAGCGCCTAT
TTGTACATCTATGCATATTTGAAGAAGGAGAAACCGTTGCGACGTGTCCA
AACGCTCCGGATTCTACGCTTTCGTTCGAGCAATGACTACGGAGTGAATC
TACAGACCGCCGAGATGTGGCATCATACGATTCGAAAGCACAAGCGTGGC
AATGGCAGCAGTTCGCCCGCCGATTGTGGCAAACAGTTGCTCATCCTACT
GAATCCGAAATCCGGTTCGGGCAAAGGGCGTGAGCTCTTCCAGAAACAGG
TGGCACCTTTGCTGACGGAAGCAGAGGTGCAATACGATCTCCAAATCACC
ACACATCCGCAGTATGCCAAGGAGTTCGTGCGGAAC
BS13207.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:42:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1747-PB | 1926 | Sk1-RB | 1..718 | 17..734 | 3565 | 99.8 | Plus |
| CG1747-PA | 1926 | Sk1-RA | 1..718 | 17..734 | 3565 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk1-RA | 2680 | CG1747-RA | 303..1020 | 17..734 | 3575 | 99.9 | Plus |
| Sk1-RB | 2616 | CG1747-RB | 237..954 | 17..734 | 3575 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11443633..11444350 | 17..734 | 3575 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:51:17 has no hits.
BS13207.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:27 Download gff for
BS13207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1747-PA | 1..719 | 17..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:47:15 Download gff for
BS13207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RB | 230..955 | 10..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:21:58 Download gff for
BS13207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RB | 230..955 | 10..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:21:58 Download gff for
BS13207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11443626..11444351 | 10..736 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:47:15 Download gff for
BS13207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11337659..11338384 | 10..736 | 99 | | Plus |
BS13207.pep Sequence
Translation from 16 to 1941
> BS13207.pep
MTANTGTSGENLMGNGGKTHEPSTPTSDTEVASGTPTELSEIFFVDNSRR
KQSIKIQVKLCPEGVYLRRETEEDDHINEQLIRIDDIIGSRYGRRLKKRA
RGGLNSCRNPNVPGQEADSEPDSDNSAYLYIYAYLKKEKPLRRVQTLRIL
RFRSSNDYGVNLQTAEMWHHTIRKHKRGNGSSSPADCGKQLLILLNPKSG
SGKGRELFQKQVAPLLTEAEVQYDLQITTHPQYAKEFVRTRRDLLTRYSG
IVVASGDGLFYEVLNGLMERMDWRRACRELPLGIIPCGSGNGLAKSVAHH
CNEPYEPKPILHATLTCMAGKSTPMDVVRVELATRDKHFVMYSFLSVGWG
LIADIDIESERLRSIGAQRFTLWAIKRLIGLRSYKGRVSYLLGKGKKEPP
VEAARELPAESTAAGIRSSLPLNAGEFHDLPEEEEGEAVLDGEQFADAIS
LDRSVYRQHADSWHSAMSRRTAYYSLGGPSMRSNRSRMSISQRIEAANAE
FAERVPTGTIPPLQMPLLSSDGWICEDGDFVMVHAAYTTHLSSDVFFAPE
SRLDDGLIYLVIIRRGVSRHQLLNFMLNLNAGTHLPIGEDPFIKVVPCRA
FRIEPSSSDGILVVDGERVEYGPIQAEVMPGLINVMTTSGQ*
BS13207.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:46:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk1-PA | 641 | CG1747-PA | 1..641 | 1..641 | 3335 | 100 | Plus |
| Sk1-PB | 641 | CG1747-PB | 1..641 | 1..641 | 3335 | 100 | Plus |
| Sk2-PA | 661 | CG32484-PA | 7..658 | 18..636 | 1195 | 41.1 | Plus |
