Clone Sequence Records
BS13210.3prime Sequence
748 bp (695 high quality bases) assembled on 2006-10-13
> BS13210.3prime
ATGGTCTAGAAAGCTTCTACTGCAACAGATCCAGTGCGTGCAGACTCTCC
ACGTCCGGATCAAAGTTGGCGTCGCAGGTGGAGAGCCAGTCCCATACCCG
CCGCCGCACCATCGCCTGGTCGATGGGTATATCCAGACCGTAGGTGGACA
TCATCCGCTTGAAGCGCAGCTTGTTCTCATCCCCGGAGAGACGACCCTCC
CGCTGGTTGAGGTAGATGCAGGAGTCCTGGTCGTGATTGGTGGGCGAGAT
GAGGGTGGCCGACTTGGAGGTGGAGATGCGACACTCCACCCAGCGGTCCT
TCATATACTTGGCCACCTCGGTGATCTTGCAGCGGTCCTCGGGATCGTGG
CTCAGATACTTCCGGAAGCAGCGCATCAGCCGCGGCGAGAAGCGCCGGAA
ATTGTCCGGCACTTTGGTGGTCTTGCGCTGCTCGTACTTCATGAAGTTGG
CATAGGACTGGTCCTTCACCCAATCGGCCGACTGCCATGGAGGATTGCCG
GTGAGGATGTTGTACAGCAGGATGCCGAACTGCCAGGAATCGCTGACGGG
CAGGCACTGGAAGCGTTCGTTCTTGATCAGCTCCAGCTGCTCCGGCGGCA
CGCAGCTGGTCCACGTGTGCTTCACCTTGTGCACCAGCAGACCCTTCTTC
GTGGTGGCCCCAAAGTCGCACAGCTTCACGCGCGTAAAGTCCGGCGTGAA
GACCAGGATATTTTCGATCTTCAGGTCGCGATGCACCAGATTCTTGGA
BS13210.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11221-PA | 1371 | CG11221-RA | 640..1371 | 748..17 | 3660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:06:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11221-RB | 2722 | CG11221-RB | 1155..1887 | 748..16 | 3665 | 100 | Minus |
| CG11221-RA | 1979 | CG11221-RA | 1155..1887 | 748..16 | 3665 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6754566..6755298 | 748..16 | 3665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:06:44 has no hits.
BS13210.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:28 Download gff for
BS13210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11221-PA | 641..1371 | 17..747 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:56 Download gff for
BS13210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11221-RA | 1156..1889 | 11..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:58 Download gff for
BS13210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11221-RA | 1156..1889 | 11..747 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:58 Download gff for
BS13210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6754567..6755300 | 11..747 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:56 Download gff for
BS13210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6754567..6755300 | 11..747 | 99 | | Minus |
BS13210.5prime Sequence
687 bp (655 high quality bases) assembled on 2006-10-13
> BS13210.5prime
GAAGTTATCAGTCGACATGGGCACTATCGAGAAACGCTCATTCTCCTTCC
GGCTGCGTCGATCCTTCGGCGACGGTGGTAGCACCAACAGCCGCAATAGC
AACAACAACAGCAGCACCTGCACCAACCACAACAACCAGAAGCGATGCAG
CACTCCGCTGACGCCGACGAGCACCAGCACGGGTCGACTGGAGGTGCCTG
GAGCGGCCAGCGTGAGCCGCCGGAGCAGCATCTACAAGAAGCCGGACAAG
AATGACGGCGGACAGATCCATCTCATTCCGGACGTGGAGCTGCCGCTGAT
GACCTTCGCCGACCAGTACAACATAGAGAAGACGCTGGCCGAGGGCTGTT
TCGCCAAGATACTGCTGTGCCGGCATAGACCCACCAATACGCTGGTGGTG
CTGAAGGCGGTGCACGCCGAGCTGACCACGATCAAGGAGTTCCAGAAGGA
GTTCCACTACAACTACGAGCTGTCGCATCACCATCACATACTGAGCGCAT
ATGCGGTGGCTTTCCAGACAATGGACTACTACGTGTTCGCCATGGAGCAC
GCCCCCTACGGCGATCTGGCCTCCAACATCGGACCCAACGGCCTGCACGA
GAACGCCTGCAAACTGATCTCGGAGCAGTTGAGCTCCGCCCTCGGCTTCA
TGCACTCCAAGAATCTGGTGCATCGCGACCTGAAGAT
BS13210.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:35:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11221-PA | 1371 | CG11221-RA | 1..671 | 17..687 | 3355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:54:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11221-RB | 2722 | CG11221-RB | 516..1186 | 17..687 | 3355 | 100 | Plus |
| CG11221-RA | 1979 | CG11221-RA | 516..1186 | 17..687 | 3355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:54:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6753939..6754597 | 29..687 | 3295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:54:30 has no hits.
BS13210.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:38:29 Download gff for
BS13210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11221-PA | 1..671 | 17..687 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:10 Download gff for
BS13210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11221-RA | 507..1186 | 8..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:31 Download gff for
BS13210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11221-RA | 507..1186 | 8..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:31 Download gff for
BS13210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6753940..6754597 | 30..687 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:10 Download gff for
BS13210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6753940..6754597 | 30..687 | 100 | | Plus |
BS13210.complete Sequence
1403 bp assembled on 2006-11-01
GenBank Submission: FJ637391
> BS13210.complete
GAAGTTATCAGTCGACATGGGCACTATCGAGAAACGCTCATTCTCCTTCC
GGCTGCGTCGATCCTTCGGCGACGGTGGTAGCACCAACAGCCGCAATAGC
AACAACAACAGCAGCACCTGCACCAACCACAACAACCAGAAGCGATGCAG
CACTCCGCTGACGCCGACGAGCACCAGCACGGGTCGACTGGAGGTGCCTG
GAGCGGCCAGCGTGAGCCGCCGGAGCAGCATCTACAAGAAGCCGGACAAG
AATGACGGCGGACAGATCCATCTCATTCCGGACGTGGAGCTGCCGCTGAT
GACCTTCGCCGACCAGTACAACATAGAGAAGACGCTGGCCGAGGGCTGTT
TCGCCAAGATACTGCTGTGCCGGCATAGACCCACCAATACGCTGGTGGTG
CTGAAGGCGGTGCACGCCGAGCTGACCACGATCAAGGAGTTCCAGAAGGA
GTTCCACTACAACTACGAGCTGTCGCATCACCATCACATACTGAGCGCAT
ATGCGGTGGCTTTCCAGACAATGGACTACTACGTGTTCGCCATGGAGCAC
GCCCCCTACGGCGATCTGGCCTCCAACATCGGACCCAACGGCCTGCACGA
GAACGCCTGCAAACTGATCTCGGAGCAGTTGAGCTCCGCCCTCGGCTTCA
TGCACTCCAAGAATCTGGTGCATCGCGACCTGAAGATCGAAAATATCCTG
GTCTTCACGCCGGACTTTACGCGCGTGAAGCTGTGCGACTTTGGGGCCAC
CACGAAGAAGGGTCTGCTGGTGCACAAGGTGAAGCACACGTGGACCAGCT
GCGTGCCGCCGGAGCAGCTGGAGCTGATCAAGAACGAACGCTTCCAGTGC
CTGCCCGTCAGCGATTCCTGGCAGTTCGGCATCCTGCTGTACAACATCCT
CACCGGCAATCCTCCATGGCAGTCGGCCGATTGGGTGAAGGACCAGTCCT
ATGCCAACTTCATGAAGTACGAGCAGCGCAAGACCACCAAAGTGCCGGAC
AATTTCCGGCGCTTCTCGCCGCGGCTGATGCGCTGCTTCCGGAAGTATCT
GAGCCACGATCCCGAGGACCGCTGCAAGATCACCGAGGTGGCCAAGTATA
TGAAGGACCGCTGGGTGGAGTGTCGCATCTCCACCTCCAAGTCGGCCACC
CTCATCTCGCCCACCAATCACGACCAGGACTCCTGCATCTACCTCAACCA
GCGGGAGGGTCGTCTCTCCGGGGATGAGAACAAGCTGCGCTTCAAGCGGA
TGATGTCCACCTACGGTCTGGATATACCCATCGACCAGGCGATGGTGCGG
CGGCGGGTATGGGACTGGCTCTCCACCTGCGACGCCAACTTTGATCCGGA
CGTGGAGAGTCTGCACGCACTGGATCTGTTGCAGTAGAAGCTTTCTAGAC
CAT
BS13210.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11221-RB | 1371 | CG11221-PB | 1..1371 | 17..1387 | 6855 | 100 | Plus |
| CG11221-RA | 1371 | CG11221-PA | 1..1371 | 17..1387 | 6855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11221-RB | 2722 | CG11221-RB | 516..1887 | 17..1388 | 6860 | 100 | Plus |
| CG11221-RA | 1979 | CG11221-RA | 516..1887 | 17..1388 | 6860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6753939..6755298 | 29..1388 | 6800 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:17:05 has no hits.
BS13210.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:06 Download gff for
BS13210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11221-RA | 1..1371 | 17..1387 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:57 Download gff for
BS13210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11221-RA | 510..1880 | 17..1387 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:31 Download gff for
BS13210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11221-RA | 516..1886 | 17..1387 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:06 Download gff for
BS13210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11221-RA | 501..1883 | 8..1393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:41 Download gff for
BS13210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11221-RA | 516..1886 | 17..1387 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:41 Download gff for
BS13210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6753940..6755297 | 30..1387 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:31 Download gff for
BS13210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6753940..6755297 | 30..1387 | 100 | | Plus |
BS13210.pep Sequence
Translation from 16 to 1386
> BS13210.pep
MGTIEKRSFSFRLRRSFGDGGSTNSRNSNNNSSTCTNHNNQKRCSTPLTP
TSTSTGRLEVPGAASVSRRSSIYKKPDKNDGGQIHLIPDVELPLMTFADQ
YNIEKTLAEGCFAKILLCRHRPTNTLVVLKAVHAELTTIKEFQKEFHYNY
ELSHHHHILSAYAVAFQTMDYYVFAMEHAPYGDLASNIGPNGLHENACKL
ISEQLSSALGFMHSKNLVHRDLKIENILVFTPDFTRVKLCDFGATTKKGL
LVHKVKHTWTSCVPPEQLELIKNERFQCLPVSDSWQFGILLYNILTGNPP
WQSADWVKDQSYANFMKYEQRKTTKVPDNFRRFSPRLMRCFRKYLSHDPE
DRCKITEVAKYMKDRWVECRISTSKSATLISPTNHDQDSCIYLNQREGRL
SGDENKLRFKRMMSTYGLDIPIDQAMVRRRVWDWLSTCDANFDPDVESLH
ALDLLQ*
BS13210.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11221-PB | 456 | CG11221-PB | 1..456 | 1..456 | 2447 | 100 | Plus |
| CG11221-PA | 456 | CG11221-PA | 1..456 | 1..456 | 2447 | 100 | Plus |
| CG4945-PD | 533 | CG4945-PD | 3..355 | 78..437 | 574 | 33 | Plus |
| CG4945-PA | 551 | CG4945-PA | 3..355 | 78..437 | 574 | 33 | Plus |
| CG4945-PC | 577 | CG4945-PC | 3..355 | 78..437 | 574 | 33 | Plus |
